BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0554.p (311 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001101355.1| putative membrane protein ComM [Herminiimona... 189 7e-46 ref|YP_001355058.1| PilM type IV pilus assembly protein [Janthin... 187 3e-45 ref|YP_004751113.1| type IV pilus biogenesis protein PilM [Colli... 186 5e-45 ref|ZP_08275830.1| Type IV pilus biogenesis protein PilM [Oxalob... 183 3e-44 ref|YP_283439.1| Type IV pilus assembly protein PilM [Dechloromo... 173 4e-41 >ref|YP_001101355.1| putative membrane protein ComM [Herminiimonas arsenicoxydans] emb|CAL63234.1| Putative Type IV pilus assembly protein PilM [Herminiimonas arsenicoxydans] Length = 359 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 111/332 (33%), Positives = 173/332 (52%), Gaps = 22/332 (6%) Query: 1 MVEFSGSRIQTAQLACCTREALPDGAIGDEGIGNLRQVMEAVSRLWGKSGSQARQVAIAI 60 +VE S +L C E L GA+ D I N+ QV +AV R+W KSG++A+ A+ + Sbjct: 28 LVELSEVGKGELRLECFASEPLARGAVVDGNIENIDQVSDAVHRVWKKSGTRAKFAAMGM 87 Query: 61 PSSRALTQIVAIPAHSSQAQRAALAERHAESLLPYPPAQALLDFRIIGPTHNAPDQLDML 120 P + +T+ + +P+ S+ E A +P+ + LDF +IGP N+P+ ++++ Sbjct: 88 PPASVITKKIILPSGLSEESLELQVETEASQYIPFALDEVRLDFDVIGPVENSPEDVEVM 147 Query: 121 IAAVRRDDVEDRIAVAESLGLQTMVADIESHAAAAALNRT---LPAAPASSVFAMANLET 177 +AA R++ VEDR+AVAE+ G+ V DIES+AA AA+ R LP A + + + Sbjct: 148 LAATRKEKVEDRVAVAEAAGITPTVMDIESYAARAAIERITRQLPNAGKGQILGLFQIGA 207 Query: 178 HGALLSLCCAGRVVGERQLDIGHRQLQHDL-QQY-----------------DGDQSDVLA 219 +S+ G+++ ER+ G QL D+ + Y DG QSD+L Sbjct: 208 QVTHISILLDGQLIYEREQPFGGHQLTQDIVRTYGLSYEEAEIKKKMGDLPDGYQSDILE 267 Query: 220 GYLAQAAAHLAGVLQTLQQQTSCVP-SHIVLTGAGATISGMEEAVHKRTTISTAVATPFA 278 +L AA + +Q T + L G A I GM + + RT +ST+V +PF Sbjct: 268 PFLENAALEVTRAIQFFFTSTPYTRIDQLFLAGGCAIIPGMVDMIANRTKLSTSVVSPFK 327 Query: 279 GMVPAPAIDRAQIAMDGPACATACGLALRRFD 310 GM P + Q+ ++ PA ACGLA+RRFD Sbjct: 328 GMQLGPNVREKQLRIEAPAYLVACGLAMRRFD 359 >ref|YP_001355058.1| PilM type IV pilus assembly protein [Janthinobacterium sp. Marseille] gb|ABR89513.1| PilM type IV pilus assembly protein [Janthinobacterium sp. Marseille] Length = 360 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 109/333 (32%), Positives = 177/333 (53%), Gaps = 22/333 (6%) Query: 1 MVEFSGSRIQTAQLACCTREALPDGAIGDEGIGNLRQVMEAVSRLWGKSGSQARQVAIAI 60 +VE S + +L C E LP GA+ D I N+ QV +AV R+W KSG++A+ A+ + Sbjct: 28 LVELSEAGKNELRLECFASEPLPRGAVVDGNIENIDQVSDAVLRVWKKSGTRAKFAAMGM 87 Query: 61 PSSRALTQIVAIPAHSSQAQRAALAERHAESLLPYPPAQALLDFRIIGPTHNAPDQLDML 120 P + +T+ + +P+ S+ E A +P+ + LDF +IG N+PD ++++ Sbjct: 88 PPASVITKKIILPSGLSEESLELQVETEASQYIPFALDEVRLDFDVIGLVENSPDDVEVM 147 Query: 121 IAAVRRDDVEDRIAVAESLGLQTMVADIESHAAAAALNR---TLPAAPASSVFAMANLET 177 +AA R++ VEDR+AVAE+ GL+ + DIES+AA +A+ R +P + + + + Sbjct: 148 LAATRKEKVEDRVAVAEAAGLKPTIMDIESYAARSAIARLTEQMPNRAQGQILGLFQIGS 207 Query: 178 HGALLSLCCAGRVVGERQLDIGHRQL-QHDLQQY-----------------DGDQSDVLA 219 +S+ G+++ ER+ G QL Q ++ Y DG Q+++L Sbjct: 208 QVMHVSMLLDGQLIYEREQPFGGHQLTQEIVRTYGLSYEEAEIKKRNNDLPDGYQTEILE 267 Query: 220 GYLAQAAAHLAGVLQTLQQQTSCVP-SHIVLTGAGATISGMEEAVHKRTTISTAVATPFA 278 +L AA + +Q T + L G A I GM + V RT +ST+V +PF Sbjct: 268 PFLETAAQEVTRAIQFFFTSTPYTRVDQLFLAGGCAIIPGMVDMVANRTKLSTSVVSPFK 327 Query: 279 GMVPAPAIDRAQIAMDGPACATACGLALRRFDR 311 GM +P + Q+ ++ PA ACGLA+RRFDR Sbjct: 328 GMQLSPNVREKQLRIEAPAYLVACGLAMRRFDR 360 >ref|YP_004751113.1| type IV pilus biogenesis protein PilM [Collimonas fungivorans Ter331] gb|AEK60290.1| Type IV pilus biogenesis protein PilM [Collimonas fungivorans Ter331] Length = 375 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 113/331 (34%), Positives = 171/331 (51%), Gaps = 22/331 (6%) Query: 1 MVEFSGSRIQTAQLACCTREALPDGAIGDEGIGNLRQVMEAVSRLWGKSGSQARQVAIAI 60 +VE S + +L E LP GA+ D I N+ QV E V RLW KSGS R VA+ + Sbjct: 44 LVELSETGKDQLRLERYASEPLPRGAVVDGNIENIEQVTEVVRRLWKKSGSGTRLVALGM 103 Query: 61 PSSRALTQIVAIPAHSSQAQRAALAERHAESLLPYPPAQALLDFRIIGPTHNAPDQLDML 120 P + +T+ + + + + + E A +P+ + LDF +IGP ++P+ +++L Sbjct: 104 PPASVITKKIILASGMLEEELEMQVESEASQYIPFALDEVSLDFDVIGPAQHSPEDVEVL 163 Query: 121 IAAVRRDDVEDRIAVAESLGLQTMVADIESHAAAAALNRT---LPAAPASSVFAMANLET 177 +AA R++ VEDR+AVAE+ GL+ V DIES+AA AA+NR LP A + + + T Sbjct: 164 LAATRKEKVEDRVAVAEAAGLKPTVMDIESYAARAAINRIIGQLPKAGQGQIVGLFQIGT 223 Query: 178 HGALLSLCCAGRVVGERQLDIGHRQLQHDL-QQY-----------------DGDQSDVLA 219 +S G+++ ER+ G QL D+ + Y +G + ++L Sbjct: 224 QTTHVSALLDGQLIYEREQPFGGNQLTQDIVRAYGLSYEEAETKKRNNDLPEGYEQEILN 283 Query: 220 GYLAQAAAHLAGVLQTLQQQTSCVP-SHIVLTGAGATISGMEEAVHKRTTISTAVATPFA 278 +L AA + +Q T + L G ATI G+ E V R IST+V +PF Sbjct: 284 PFLESAALEVTRAIQFFFTSTPYTRLDQLFLAGGCATIPGLVEVVAGRAKISTSVVSPFT 343 Query: 279 GMVPAPAIDRAQIAMDGPACATACGLALRRF 309 GM P + Q+ MD P+ ACGLA+RRF Sbjct: 344 GMQLGPNVREKQLRMDAPSYLVACGLAMRRF 374 >ref|ZP_08275830.1| Type IV pilus biogenesis protein PilM [Oxalobacteraceae bacterium IMCC9480] gb|EGF30702.1| Type IV pilus biogenesis protein PilM [Oxalobacteraceae bacterium IMCC9480] Length = 359 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 112/332 (33%), Positives = 177/332 (53%), Gaps = 22/332 (6%) Query: 1 MVEFSGSRIQTAQLACCTREALPDGAIGDEGIGNLRQVMEAVSRLWGKSGSQARQVAIAI 60 +VE + +L E+LP GA+ D I N+ QV EAV R+W KSG++AR VA+ + Sbjct: 28 LVELAEVGKNELRLEHYASESLPRGAVVDGNIENIEQVAEAVRRVWKKSGTRARLVALGM 87 Query: 61 PSSRALTQIVAIPAHSSQAQRAALAERHAESLLPYPPAQALLDFRIIGPTHNAPDQLDML 120 P + +T+ + +P S+ E A +P+ + LDF ++GP ++P+ +D+L Sbjct: 88 PPASVITKKIVLPGGLSEEDLEFQVETEASQYIPFALDEVSLDFDVVGPAAHSPEDVDVL 147 Query: 121 IAAVRRDDVEDRIAVAESLGLQTMVADIESHAAAAALNRTLPAAPASS---VFAMANLET 177 IAA R++ VEDR+AVAE+ GL+ +V DIES++A AAL+R + + + A+ + T Sbjct: 148 IAATRKEKVEDRVAVAEAAGLKPIVMDIESYSARAALDRLVTRSSQGGRGQIVALFQIGT 207 Query: 178 HGALLSLCCAGRVVGERQLDIGHRQLQHDL-------------QQYDGD-----QSDVLA 219 +S+ G+ + ER+ G QL D+ ++ GD ++++L Sbjct: 208 QVTHISVLLDGQPIYEREQPFGGHQLTQDIVRTYGLSYEDAEAKKKSGDLPEGYEAELLE 267 Query: 220 GYLAQAAAHLAGVLQTLQQQTSCVP-SHIVLTGAGATISGMEEAVHKRTTISTAVATPFA 278 +L AA + +Q T I L G A ++G+ E V RT IST+V +PF Sbjct: 268 PFLDNAALEVTRAIQFFFTSTPYTRIDEIFLAGGCAILAGLTETVASRTKISTSVVSPFD 327 Query: 279 GMVPAPAIDRAQIAMDGPACATACGLALRRFD 310 GM ++ Q+ + PA ACGLALRRFD Sbjct: 328 GMQLGTSVREKQLRNEAPAYLVACGLALRRFD 359 >ref|YP_283439.1| Type IV pilus assembly protein PilM [Dechloromonas aromatica RCB] gb|AAZ44969.1| Type IV pilus assembly protein PilM [Dechloromonas aromatica RCB] Length = 361 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 108/332 (32%), Positives = 171/332 (51%), Gaps = 22/332 (6%) Query: 1 MVEFSGSRIQTAQLACCTREALPDGAIGDEGIGNLRQVMEAVSRLWGKSGSQARQVAIAI 60 MVE + + ++ T E LP A+ D I NL V++ V R W + G+ R VA+A+ Sbjct: 28 MVELTANGKDGYRVERYTIEVLPKDAVSDGNIANLDGVVDCVKRAWKRMGTSTRNVAMAL 87 Query: 61 PSSRALTQIVAIPAHSSQAQRAALAERHAESLLPYPPAQALLDFRIIGPTHNAPDQLDML 120 P S +T+ + +PA + A E A +P+ + LD+++IGP PD+L++L Sbjct: 88 PGSAVITKKIIVPAGLRDDELEAQVETEANQYIPFSIDEVNLDYQVIGPAPAVPDELEVL 147 Query: 121 IAAVRRDDVEDRIAVAESLGLQTMVADIESHAAAAA---LNRTLPAAPASSVFAMANLET 177 IAA +++ VEDR+AVA++ GL+ +V D+ES A AA + R LP + + V AM + Sbjct: 148 IAASKKERVEDRVAVADAAGLKALVVDVESFAVLAAFELIERQLPDSGKNQVVAMIDAGA 207 Query: 178 HGALLSLCCAGRVVGERQLDIGHRQLQHDLQQY------------------DGDQSDVLA 219 + L++ G+ V R+ G QL D+ ++ +G + ++L Sbjct: 208 NVMNLTVLRNGQQVYAREQAFGGGQLTQDIARHYGMSFEDAEAAKRAGNLPEGYEVELLN 267 Query: 220 GYLAQAAAHLAGVLQTLQQQTSCVP-SHIVLTGAGATISGMEEAVHKRTTISTAVATPFA 278 ++ A ++ LQ T HIVL G A I G++E V RT ++T +A PFA Sbjct: 268 PFMENLALEVSRALQFFFTSTQYNQVDHIVLAGGCAVIPGIDEVVATRTQVNTLIANPFA 327 Query: 279 GMVPAPAIDRAQIAMDGPACATACGLALRRFD 310 MV + + + D + ACGLALRRFD Sbjct: 328 NMVLSDRVRAKSLLADASSLMVACGLALRRFD 359