BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0548.p (238 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777551.1| hypothetical protein Hsero_4173 [Herbaspiril... 211 8e-53 ref|YP_004754657.1| hypothetical protein CFU_4012 [Collimonas fu... 146 2e-33 gb|AAT42410.1| Tfp pilus assembly protein FimV [Collimonas fungi... 144 1e-32 ref|YP_001101169.1| hypothetical protein HEAR2935 [Herminiimonas... 130 2e-28 ref|YP_001354872.1| hypothetical protein mma_3182 [Janthinobacte... 124 9e-27 >ref|YP_003777551.1| hypothetical protein Hsero_4173 [Herbaspirillum seropedicae SmR1] gb|ADJ65643.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 286 Score = 211 bits (536), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 143/288 (49%), Positives = 173/288 (60%), Gaps = 52/288 (18%) Query: 1 MLNHNNMPGAGSISDTMEFMRKMWGSMGTPAIGIPSLSVEEINKKISDLKTVASWLELNM 60 MLN + MPGAGS+ DT+EFM+ MW SMG PA+ PSLSVE+INKKI DLKTVASWLELN+ Sbjct: 1 MLNQDKMPGAGSVGDTLEFMKNMWSSMGAPAMATPSLSVEDINKKIGDLKTVASWLELNL 60 Query: 61 NMLRATIQTLEVQSATLTTLQAMGAILTAREG--------EGAAAAKTGSPFGFPAWPPQ 112 NML+ATIQTLEVQSATL+TLQAM AI+ +++ EG AA+ PFGFP WP Sbjct: 61 NMLKATIQTLEVQSATLSTLQAMSAIMASQQAPADDAAPEEGKAASPF--PFGFPMWPGA 118 Query: 113 G-KPAAEAAPAPAPE-SEPEVEPEKAPQTDAAAPAASEAKPDPAAPDFQASMANPTAWWN 170 G AA+ PA A + +E + EP+ Q +AAAPA P APD QA+MANP AWWN Sbjct: 119 GASQAADEEPAGAQDVAEEQEEPQDELQEEAAAPAGEADAPAAEAPDLQAAMANPNAWWN 178 Query: 171 LLQEQFQQAVGNVLADQPPAGKDAKAPAPA------AQKKTTKAKPAAKPRTR------- 217 LLQ+QF+QAVGN LA P + PA ++ KT AKP A P+ R Sbjct: 179 LLQDQFKQAVGNALAGGQPEQEPLLKPAKPPKAPKRSENKTVAAKPKAAPKVRPAGAPKA 238 Query: 218 --------------------------AKSTVVQSRK-PKPAPRKPKSP 238 ++ VVQSR+ KPA RKP SP Sbjct: 239 GKAAKPAPKKPPVKKAPRSAANTSAPGRTAVVQSRQNKKPASRKPTSP 286 >ref|YP_004754657.1| hypothetical protein CFU_4012 [Collimonas fungivorans Ter331] gb|AEK63834.1| hypothetical protein CFU_4012 [Collimonas fungivorans Ter331] Length = 232 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/228 (41%), Positives = 128/228 (56%), Gaps = 38/228 (16%) Query: 1 MLNHNNMPGAGSISDTMEFMRKMWGSMGTPAIGIPSLSVEEINKKISDLKTVASWLELNM 60 M++ +++PGA ++ D++EF++KMWG MG P + +P+LSVEEINKKISDLK V SWL LN+ Sbjct: 1 MMSRSSIPGADAMQDSLEFIKKMWGGMGVPGMVVPTLSVEEINKKISDLKAVESWLNLNL 60 Query: 61 NMLRATIQTLEVQSATLTTLQAMGAIL---TAREGEGAA-------AAKTGSPFGFPAWP 110 NMLR TIQ LEVQS T++ LQAM ++ T R+G+ A A+ G PF F Sbjct: 61 NMLRTTIQALEVQSGTISALQAMASVNQAGTERQGDSDAEPNASAWASAAGFPFSF---- 116 Query: 111 PQGKPAAEAAPAPAPESEPEVEPEKAPQTDAAAPAASEAKPDPAAPDFQASMANPTAWWN 170 PA + P P T+ P A + +P S+ N AWW+ Sbjct: 117 --------MNPAQDSAAPPASAQAAQPATETEKPPAPSSAAEP-------SLGNSNAWWD 161 Query: 171 LLQEQFQQAVGNVLADQPPAGKDAKAPAPAAQKKTTKAKPAAKPRTRA 218 LLQ QF+QAV +V A ++ PA K K KPAAK ++A Sbjct: 162 LLQNQFKQAVNSV-----AAAENMVMPA----KTAAKVKPAAKSGSKA 200 >gb|AAT42410.1| Tfp pilus assembly protein FimV [Collimonas fungivorans Ter331] Length = 231 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 93/227 (40%), Positives = 127/227 (55%), Gaps = 38/227 (16%) Query: 2 LNHNNMPGAGSISDTMEFMRKMWGSMGTPAIGIPSLSVEEINKKISDLKTVASWLELNMN 61 ++ +++PGA ++ D++EF++KMWG MG P + +P+LSVEEINKKISDLK V SWL LN+N Sbjct: 1 MSRSSIPGADAMQDSLEFIKKMWGGMGVPGMVVPTLSVEEINKKISDLKAVESWLNLNLN 60 Query: 62 MLRATIQTLEVQSATLTTLQAMGAIL---TAREGEGAA-------AAKTGSPFGFPAWPP 111 MLR TIQ LEVQS T++ LQAM ++ T R+G+ A A+ G PF F Sbjct: 61 MLRTTIQALEVQSGTISALQAMASVNQAGTERQGDSDAEPNASAWASAAGFPFSF----- 115 Query: 112 QGKPAAEAAPAPAPESEPEVEPEKAPQTDAAAPAASEAKPDPAAPDFQASMANPTAWWNL 171 PA + P P T+ P A + +P S+ N AWW+L Sbjct: 116 -------MNPAQDSAAPPASAQAAQPATETEKPPAPSSAAEP-------SLGNSNAWWDL 161 Query: 172 LQEQFQQAVGNVLADQPPAGKDAKAPAPAAQKKTTKAKPAAKPRTRA 218 LQ QF+QAV +V A ++ PA K K KPAAK ++A Sbjct: 162 LQNQFKQAVNSV-----AAAENMVMPA----KTAAKVKPAAKSGSKA 199 >ref|YP_001101169.1| hypothetical protein HEAR2935 [Herminiimonas arsenicoxydans] emb|CAL63048.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 192 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/186 (44%), Positives = 104/186 (55%), Gaps = 50/186 (26%) Query: 6 NMPGAGSISDTMEFMRKMWG----SMGTPAIGIPSLSVEEINKKISDLKTVASWLELNMN 61 N+PG +++DT+EF++KMWG S G P + IP+LS++E+NK+I+DLK V SWL +NMN Sbjct: 8 NLPGFDAMADTLEFVKKMWGGAHASTGIPGMVIPTLSLDELNKQIADLKAVESWLNVNMN 67 Query: 62 MLRATIQTLEVQSATLTTLQAMGAILTAREGEGAAAAKTGSPFGFPAWPPQGKPAAEAAP 121 MLR TIQ LEVQ+AT++TLQAMG + GAAA FG A PA A Sbjct: 68 MLRGTIQALEVQAATISTLQAMGKTM------GAAA------FGSDAHSNLVPPAGTGAD 115 Query: 122 APAPESEPEVEPEKAPQTDAAAPAASEAKPDPAAPDFQASMANPTAWWNLLQEQFQQAVG 181 PAP DAA AA WWNLLQEQF QAV Sbjct: 116 HPAP--------------DAAQVAAD--------------------WWNLLQEQFNQAVS 141 Query: 182 NVLADQ 187 V+A++ Sbjct: 142 GVMAEE 147 >ref|YP_001354872.1| hypothetical protein mma_3182 [Janthinobacterium sp. Marseille] gb|ABR91116.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 183 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 93/238 (39%), Positives = 120/238 (50%), Gaps = 69/238 (28%) Query: 3 NHNNMPGAGSISDTMEFMRKMWGSMGTPAIGIP-----SLSVEEINKKISDLKTVASWLE 57 N N+PG ++++TMEF++ MWG M PA GIP +LSVEEINK+I+DLK V +WL Sbjct: 5 NMPNLPGFDAMAETMEFVKNMWGGMKPPATGIPGMVMPTLSVEEINKQITDLKAVEAWLT 64 Query: 58 LNMNMLRATIQTLEVQSATLTTLQAMGAILTAREGEGAAAAKTGSPFGFPAWPPQGKPAA 117 NMNMLR TIQ LEVQSAT++TL++MG Sbjct: 65 ANMNMLRGTIQALEVQSATISTLRSMGQTF------------------------------ 94 Query: 118 EAAPAPAPESEPEVEPEKAPQTDAAAPAASEAKPDPAAPDFQASMANPTAWWNLLQEQFQ 177 AP+ AA PAA PDP A+ A TAWW++LQ+QF Sbjct: 95 ------------------APEPKAAEPAAP-VSPDPL--HASAASATSTAWWDMLQDQFN 133 Query: 178 QAVGNVLADQPPAGKDAKAPAPAAQKKTTKAKPAAKPRTRAKSTVVQSRKPKPAPRKP 235 QAV V++++ AA KKT KPAAK K T +S KPA ++P Sbjct: 134 QAVSTVMSEE-----------AAASKKTV--KPAAKKPVAVKKTAAKSSGRKPAGKRP 178