BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0543.p (325 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777547.1| ABC transporter periplasmic protein [Herbasp... 550 e-155 ref|YP_003777546.1| ABC transporter periplasmic protein [Herbasp... 492 e-137 ref|NP_889890.1| hypothetical protein BB3356 [Bordetella bronchi... 461 e-128 ref|NP_880732.1| hypothetical protein BP2068 [Bordetella pertuss... 458 e-127 ref|NP_884025.1| hypothetical protein BPP1752 [Bordetella parape... 458 e-127 >ref|YP_003777547.1| ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] emb|CAP19661.2| periplasmic component protein [Herbaspirillum seropedicae] gb|ADJ65639.1| ABC-type uncharacterized transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 326 Score = 550 bits (1418), Expect = e-155, Method: Compositional matrix adjust. Identities = 271/324 (83%), Positives = 298/324 (91%) Query: 1 MSSMKKLSLSTLVGTLVLAAVCSAPALAADKAVLVTAIVEHPALDAVRDGVKDELKDEGF 60 MS KL+L +V L LAAVCSAPA+AADK+V VTAIVEHPALDAVRDGVKDELK+EGF Sbjct: 1 MSYNNKLTLRAMVAALSLAAVCSAPAMAADKSVAVTAIVEHPALDAVRDGVKDELKEEGF 60 Query: 61 EAGKNLKWEYQSAQGNTGTAAQIARKFVGDKPDAIVAIATPSAQALVSATKTIPVVYSGV 120 EAGKNLKWEYQSAQGNTGTAAQIARKFVGDKPDAIVAIATPSAQALV+ATK+IPVVYSGV Sbjct: 61 EAGKNLKWEYQSAQGNTGTAAQIARKFVGDKPDAIVAIATPSAQALVAATKSIPVVYSGV 120 Query: 121 TDPVAAQLVKDWKPSGTNVTGVSDLLELEKQVDLIKRVVPSVKRVGMVYNPGEANSAVVV 180 TDPVAAQLVKDWK SGTNVTGVSDLLEL+KQVDLIKRVVP+ KRVGMVYNPGEANSAVVV Sbjct: 121 TDPVAAQLVKDWKASGTNVTGVSDLLELDKQVDLIKRVVPNAKRVGMVYNPGEANSAVVV 180 Query: 181 KAMKELLGKSGITLVEAAAPRTVDVGSAAKSLIGKIDLMYTTTDNVVVSTFESLAKVCND 240 KA+KELL KS +TLVEAAAPR+VDVGSAAKSLIGK+D++YT TDN VVS +E+L KV ND Sbjct: 181 KALKELLAKSNMTLVEAAAPRSVDVGSAAKSLIGKVDVIYTNTDNNVVSAYEALVKVGND 240 Query: 241 ARIPLLASDTGSVKRGAVAALGVNFYDLGRQTGKIVARILKGEKPGDIPSSTSKNLELYI 300 A+IPL+ASDT SVKRGA+AALGVN+YDLGRQTGK+V RILKGEKPGDIPS+TS LEL++ Sbjct: 241 AKIPLVASDTDSVKRGAIAALGVNYYDLGRQTGKVVGRILKGEKPGDIPSATSSKLELFV 300 Query: 301 NTSAAQKQGVTLSPEFLKSATKVI 324 NT+AAQKQGVTLSPE + SA VI Sbjct: 301 NTAAAQKQGVTLSPELVNSAKTVI 324 >ref|YP_003777546.1| ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65638.1| ABC-type uncharacterized transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 329 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 243/318 (76%), Positives = 273/318 (85%), Gaps = 1/318 (0%) Query: 8 SLSTLVGTLVLAAVCSAPALAADKAVLVTAIVEHPALDAVRDGVKDELKDEGFEAGKNLK 67 SL + G L L+AVC A ALAA+K V VT+ VEHPALDAVRDG KDEL GFE GKNLK Sbjct: 13 SLRAIAGALALSAVC-ASALAAEKVVAVTSYVEHPALDAVRDGTKDELVAAGFEPGKNLK 71 Query: 68 WEYQSAQGNTGTAAQIARKFVGDKPDAIVAIATPSAQALVSATKTIPVVYSGVTDPVAAQ 127 WE+QSAQ N GTA QIA+KFVGD PD IVAI TPSAQ +V+ATKTIP+VYS + DP+AAQ Sbjct: 72 WEFQSAQANAGTAGQIAKKFVGDNPDVIVAIGTPSAQPMVAATKTIPIVYSAIADPMAAQ 131 Query: 128 LVKDWKPSGTNVTGVSDLLELEKQVDLIKRVVPSVKRVGMVYNPGEANSAVVVKAMKELL 187 LVKDWKPSGTNVTG+S +L+ KQV++IKRVVP KRVG+VYNPGEANS + +K L Sbjct: 132 LVKDWKPSGTNVTGMSHMLDPVKQVEVIKRVVPEAKRVGVVYNPGEANSVSALNNLKGEL 191 Query: 188 GKSGITLVEAAAPRTVDVGSAAKSLIGKIDLMYTTTDNVVVSTFESLAKVCNDARIPLLA 247 K+G+TLVEAAAPR+VDV AAKSLIGKID+MYTTTDN VVS FESLAKVCNDA++PL+A Sbjct: 192 QKAGLTLVEAAAPRSVDVAPAAKSLIGKIDVMYTTTDNNVVSVFESLAKVCNDAKLPLIA 251 Query: 248 SDTGSVKRGAVAALGVNFYDLGRQTGKIVARILKGEKPGDIPSSTSKNLELYINTSAAQK 307 SDTGSVKRGAVAALGVNFYD+GRQTGK+V RILKGEK GDIPSS KNLELY+NTSAAQK Sbjct: 252 SDTGSVKRGAVAALGVNFYDMGRQTGKLVVRILKGEKAGDIPSSPVKNLELYVNTSAAQK 311 Query: 308 QGVTLSPEFLKSATKVIN 325 QGVTLSPEFLKSATKV+N Sbjct: 312 QGVTLSPEFLKSATKVLN 329 >ref|NP_889890.1| hypothetical protein BB3356 [Bordetella bronchiseptica RB50] emb|CAE33848.1| putative exported protein [Bordetella bronchiseptica RB50] Length = 324 Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust. Identities = 229/313 (73%), Positives = 268/313 (85%), Gaps = 1/313 (0%) Query: 13 VGTLVLA-AVCSAPALAADKAVLVTAIVEHPALDAVRDGVKDELKDEGFEAGKNLKWEYQ 71 VG L LA A+ +AP +A K+V +TAIVEHPALD+VRDGV+D LK G+E+GKNLKW+YQ Sbjct: 11 VGALALAMAIHAAPVMAQQKSVAITAIVEHPALDSVRDGVQDALKQAGYESGKNLKWQYQ 70 Query: 72 SAQGNTGTAAQIARKFVGDKPDAIVAIATPSAQALVSATKTIPVVYSGVTDPVAAQLVKD 131 SAQGNTGTAAQIARKFVGD+PD IVAIATPSAQA+V+ATK +PVVYS VTDPVAAQLV Sbjct: 71 SAQGNTGTAAQIARKFVGDRPDVIVAIATPSAQAVVAATKDVPVVYSAVTDPVAAQLVPS 130 Query: 132 WKPSGTNVTGVSDLLELEKQVDLIKRVVPSVKRVGMVYNPGEANSAVVVKAMKELLGKSG 191 + S TNVTGVSDLL L+KQ++LIK+VVP+ KRVGMVYNPGEANS VVVK M++LL K+G Sbjct: 131 MEASNTNVTGVSDLLALDKQIELIKKVVPNAKRVGMVYNPGEANSVVVVKQMQDLLPKAG 190 Query: 192 ITLVEAAAPRTVDVGSAAKSLIGKIDLMYTTTDNVVVSTFESLAKVCNDARIPLLASDTG 251 +TLVEAAAPRTVDV SAA+SLIGK+D++YT TDN VVS +ESL KV NDA+IPL+ASDT Sbjct: 191 MTLVEAAAPRTVDVASAARSLIGKVDVIYTNTDNNVVSAYESLVKVGNDAKIPLVASDTD 250 Query: 252 SVKRGAVAALGVNFYDLGRQTGKIVARILKGEKPGDIPSSTSKNLELYINTSAAQKQGVT 311 SVKRGA+AALG+N+ DLG QTGK+V RILKGEKPG +PS TS LELY+N AA KQGVT Sbjct: 251 SVKRGAIAALGINYRDLGVQTGKMVVRILKGEKPGAMPSETSSKLELYVNPGAAAKQGVT 310 Query: 312 LSPEFLKSATKVI 324 LS +KSA +VI Sbjct: 311 LSDALVKSAAQVI 323 >ref|NP_880732.1| hypothetical protein BP2068 [Bordetella pertussis Tohama I] emb|CAE42346.1| putative exported protein [Bordetella pertussis Tohama I] gb|AEE67347.1| hypothetical protein BPTD_2035 [Bordetella pertussis CS] Length = 324 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 228/313 (72%), Positives = 267/313 (85%), Gaps = 1/313 (0%) Query: 13 VGTLVLA-AVCSAPALAADKAVLVTAIVEHPALDAVRDGVKDELKDEGFEAGKNLKWEYQ 71 VG L LA A+ +AP +A K+V +TAIVEHPALD+VRDGV+D LK G+E+GKNLKW+YQ Sbjct: 11 VGALALAMAIHAAPVMAQQKSVAITAIVEHPALDSVRDGVQDALKQAGYESGKNLKWQYQ 70 Query: 72 SAQGNTGTAAQIARKFVGDKPDAIVAIATPSAQALVSATKTIPVVYSGVTDPVAAQLVKD 131 SAQGNTGTAAQIARK VGD+PD IVAIATPSAQA+V+ATK +PVVYS VTDPVAAQLV Sbjct: 71 SAQGNTGTAAQIARKLVGDRPDVIVAIATPSAQAVVAATKDVPVVYSAVTDPVAAQLVPS 130 Query: 132 WKPSGTNVTGVSDLLELEKQVDLIKRVVPSVKRVGMVYNPGEANSAVVVKAMKELLGKSG 191 + S TNVTGVSDLL L+KQ++LIK+VVP+ KRVGMVYNPGEANS VVVK M++LL K+G Sbjct: 131 MEASNTNVTGVSDLLALDKQIELIKKVVPNAKRVGMVYNPGEANSVVVVKQMQDLLPKAG 190 Query: 192 ITLVEAAAPRTVDVGSAAKSLIGKIDLMYTTTDNVVVSTFESLAKVCNDARIPLLASDTG 251 +TLVEAAAPRTVDV SAA+SLIGK+D++YT TDN VVS +ESL KV NDA+IPL+ASDT Sbjct: 191 MTLVEAAAPRTVDVASAARSLIGKVDVIYTNTDNNVVSAYESLVKVGNDAKIPLVASDTD 250 Query: 252 SVKRGAVAALGVNFYDLGRQTGKIVARILKGEKPGDIPSSTSKNLELYINTSAAQKQGVT 311 SVKRGA+AALG+N+ DLG QTGK+V RILKGEKPG +PS TS LELY+N AA KQGVT Sbjct: 251 SVKRGAIAALGINYRDLGVQTGKMVVRILKGEKPGAMPSETSSKLELYVNPGAAAKQGVT 310 Query: 312 LSPEFLKSATKVI 324 LS +KSA +VI Sbjct: 311 LSDALVKSAAQVI 323 >ref|NP_884025.1| hypothetical protein BPP1752 [Bordetella parapertussis 12822] emb|CAE37053.1| putative exported protein [Bordetella parapertussis] Length = 324 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 227/313 (72%), Positives = 267/313 (85%), Gaps = 1/313 (0%) Query: 13 VGTLVLA-AVCSAPALAADKAVLVTAIVEHPALDAVRDGVKDELKDEGFEAGKNLKWEYQ 71 VG L +A A+ +AP + K+V +TAIVEHPALD+VRDGV+D LK G+E+GKNLKW+YQ Sbjct: 11 VGALAMAMAIHAAPVMVQQKSVAITAIVEHPALDSVRDGVQDALKQAGYESGKNLKWQYQ 70 Query: 72 SAQGNTGTAAQIARKFVGDKPDAIVAIATPSAQALVSATKTIPVVYSGVTDPVAAQLVKD 131 SAQGNTGTAAQIARKFVGD+PD IVAIATPSAQA+V+ATK +PVVYS VTDPVAAQLV Sbjct: 71 SAQGNTGTAAQIARKFVGDRPDVIVAIATPSAQAVVAATKDVPVVYSAVTDPVAAQLVPS 130 Query: 132 WKPSGTNVTGVSDLLELEKQVDLIKRVVPSVKRVGMVYNPGEANSAVVVKAMKELLGKSG 191 + S TNVTGVSDLL L+KQ++LIK+VVP+ KRVGMVYNPGEANS VVVK M++LL K+G Sbjct: 131 MEASNTNVTGVSDLLALDKQIELIKKVVPNAKRVGMVYNPGEANSVVVVKQMQDLLPKAG 190 Query: 192 ITLVEAAAPRTVDVGSAAKSLIGKIDLMYTTTDNVVVSTFESLAKVCNDARIPLLASDTG 251 +TLVEAAAPRTVDV SAA+SLIGK+D++YT TDN VVS +ESL KV NDA+IPL+ASDT Sbjct: 191 MTLVEAAAPRTVDVASAARSLIGKVDVIYTNTDNNVVSAYESLVKVGNDAKIPLVASDTD 250 Query: 252 SVKRGAVAALGVNFYDLGRQTGKIVARILKGEKPGDIPSSTSKNLELYINTSAAQKQGVT 311 SVKRGA+AALG+N+ DLG QTGK+V RILKGEKPG +PS TS LELY+N AA KQGVT Sbjct: 251 SVKRGAIAALGINYRDLGVQTGKMVVRILKGEKPGAMPSETSSKLELYVNPGAAAKQGVT 310 Query: 312 LSPEFLKSATKVI 324 LS +KSA +VI Sbjct: 311 LSDALVKSAAQVI 323