BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0542.p         (195 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777547.1| ABC transporter periplasmic protein [Herbasp...   220   1e-55
ref|ZP_03572995.1| ABC-type transporter, periplasmic component [...   201   4e-50
ref|ZP_04940463.1| ABC transporter [Burkholderia cenocepacia PC1...   201   4e-50
gb|EGD00029.1| putative ABC transporter, periplasmic substrate-b...   201   5e-50
ref|YP_001578664.1| hypothetical protein Bmul_0472 [Burkholderia...   201   5e-50

>ref|YP_003777547.1| ABC transporter periplasmic protein [Herbaspirillum seropedicae
           SmR1]
 emb|CAP19661.2| periplasmic component protein [Herbaspirillum seropedicae]
 gb|ADJ65639.1| ABC-type uncharacterized transport system, periplasmic component
           protein [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score =  220 bits (560), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 111/118 (94%), Positives = 113/118 (95%)

Query: 78  AAKSLIGKVDVIYTNTDNNVVSAYEALVKVGNDAKIPLVASDTDSVKRGAIAALGVNYYD 137
           AAKSLIGKVDVIYTNTDNNVVSAYEALVKVGNDAKIPLVASDTDSVKRGAIAALGVNYYD
Sbjct: 208 AAKSLIGKVDVIYTNTDNNVVSAYEALVKVGNDAKIPLVASDTDSVKRGAIAALGVNYYD 267

Query: 138 LGRQTGKVVARILKGEKPGDIASATSSKLELFVNTTAAQKQGVTLSADLIKSAKTVIK 195
           LGRQTGKVV RILKGEKPGDI SATSSKLELFVNT AAQKQGVTLS +L+ SAKTVIK
Sbjct: 268 LGRQTGKVVGRILKGEKPGDIPSATSSKLELFVNTAAAQKQGVTLSPELVNSAKTVIK 325


>ref|ZP_03572995.1| ABC-type transporter, periplasmic component [Burkholderia
           multivorans CGD2M]
 ref|ZP_03580388.1| ABC-type transporter, periplasmic component [Burkholderia
           multivorans CGD2]
 gb|EEE05020.1| ABC-type transporter, periplasmic component [Burkholderia
           multivorans CGD2]
 gb|EEE12595.1| ABC-type transporter, periplasmic component [Burkholderia
           multivorans CGD2M]
          Length = 321

 Score =  201 bits (512), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 104/118 (88%), Positives = 107/118 (90%)

Query: 78  AAKSLIGKVDVIYTNTDNNVVSAYEALVKVGNDAKIPLVASDTDSVKRGAIAALGVNYYD 137
           AAKSLIGKVDVIYTNTDNNVVSAYEALVKV N+AKIPLVA DTDSVKRG IAALG+NY D
Sbjct: 204 AAKSLIGKVDVIYTNTDNNVVSAYEALVKVANEAKIPLVAGDTDSVKRGGIAALGINYGD 263

Query: 138 LGRQTGKVVARILKGEKPGDIASATSSKLELFVNTTAAQKQGVTLSADLIKSAKTVIK 195
           LGRQTGKVVARILKGEKPG IAS TSS LELFVNT AA KQGVTLS DL+K AKTVIK
Sbjct: 264 LGRQTGKVVARILKGEKPGTIASETSSNLELFVNTGAAAKQGVTLSPDLVKEAKTVIK 321


>ref|ZP_04940463.1| ABC transporter [Burkholderia cenocepacia PC184]
 gb|EAY63634.1| ABC transporter [Burkholderia cenocepacia PC184]
          Length = 397

 Score =  201 bits (511), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 104/118 (88%), Positives = 107/118 (90%)

Query: 78  AAKSLIGKVDVIYTNTDNNVVSAYEALVKVGNDAKIPLVASDTDSVKRGAIAALGVNYYD 137
           AAKSLIGKVDVIYTNTDNNVVSAYEALVKV N+AKIPLVA DTDSVKRG IAALG+NY D
Sbjct: 280 AAKSLIGKVDVIYTNTDNNVVSAYEALVKVANEAKIPLVAGDTDSVKRGGIAALGINYGD 339

Query: 138 LGRQTGKVVARILKGEKPGDIASATSSKLELFVNTTAAQKQGVTLSADLIKSAKTVIK 195
           LGRQTGKVVARILKGEKPG IAS TSS LELFVNT AA KQGVTLS DL+K AKTVIK
Sbjct: 340 LGRQTGKVVARILKGEKPGAIASETSSNLELFVNTGAAAKQGVTLSPDLVKEAKTVIK 397


>gb|EGD00029.1| putative ABC transporter, periplasmic substrate-binding protein
           [Burkholderia sp. TJI49]
          Length = 321

 Score =  201 bits (511), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 104/118 (88%), Positives = 107/118 (90%)

Query: 78  AAKSLIGKVDVIYTNTDNNVVSAYEALVKVGNDAKIPLVASDTDSVKRGAIAALGVNYYD 137
           AAKSLIGKVDVIYTNTDNNVVSAYEALVKV N+AKIPLVA DTDSVKRG IAALG+NY D
Sbjct: 204 AAKSLIGKVDVIYTNTDNNVVSAYEALVKVANEAKIPLVAGDTDSVKRGGIAALGINYGD 263

Query: 138 LGRQTGKVVARILKGEKPGDIASATSSKLELFVNTTAAQKQGVTLSADLIKSAKTVIK 195
           LGRQTGKVVARILKGEKPG IAS TSS LELFVNT AA KQGVTLS DL+K AKTVIK
Sbjct: 264 LGRQTGKVVARILKGEKPGAIASETSSNLELFVNTGAAAKQGVTLSPDLVKEAKTVIK 321


>ref|YP_001578664.1| hypothetical protein Bmul_0472 [Burkholderia multivorans ATCC
           17616]
 ref|YP_001947208.1| putative ABC transporter substrate-binding protein [Burkholderia
           multivorans ATCC 17616]
 ref|ZP_03584141.1| ABC-type transporter, periplasmic component [Burkholderia
           multivorans CGD1]
 gb|ABX14167.1| protein of unknown function DUF534 [Burkholderia multivorans ATCC
           17616]
 dbj|BAG44672.1| putative ABC transport system substrate-binding protein
           [Burkholderia multivorans ATCC 17616]
 gb|EEE00991.1| ABC-type transporter, periplasmic component [Burkholderia
           multivorans CGD1]
          Length = 321

 Score =  201 bits (511), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 104/118 (88%), Positives = 107/118 (90%)

Query: 78  AAKSLIGKVDVIYTNTDNNVVSAYEALVKVGNDAKIPLVASDTDSVKRGAIAALGVNYYD 137
           AAKSLIGKVDVIYTNTDNNVVSAYEALVKV N+AKIPLVA DTDSVKRG IAALG+NY D
Sbjct: 204 AAKSLIGKVDVIYTNTDNNVVSAYEALVKVANEAKIPLVAGDTDSVKRGGIAALGINYGD 263

Query: 138 LGRQTGKVVARILKGEKPGDIASATSSKLELFVNTTAAQKQGVTLSADLIKSAKTVIK 195
           LGRQTGKVVARILKGEKPG IAS TSS LELFVNT AA KQGVTLS DL+K AKTVIK
Sbjct: 264 LGRQTGKVVARILKGEKPGAIASETSSNLELFVNTGAAAKQGVTLSPDLVKEAKTVIK 321