BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0538.p (247 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001101155.1| amidophosphoribosyltransferase [Herminiimona... 271 6e-71 ref|YP_003777542.1| amidophosphoribosyltransferase [Herbaspirill... 256 2e-66 ref|YP_004754652.1| competence protein F [Collimonas fungivorans... 230 1e-58 ref|ZP_08273189.1| Competence protein F [Oxalobacteraceae bacter... 224 1e-56 ref|YP_001354845.1| Comf family protein [Janthinobacterium sp. M... 211 1e-52 >ref|YP_001101155.1| amidophosphoribosyltransferase [Herminiimonas arsenicoxydans] emb|CAL63034.1| Putative amidophosphoribosyltransferase [Herminiimonas arsenicoxydans] Length = 247 Score = 271 bits (693), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 153/251 (60%), Positives = 172/251 (68%), Gaps = 8/251 (3%) Query: 1 MLSRLLTISR---RLLPFGRLLPSSCVLCGQTDREALCQSCRTRYFSIRPRRCVQCAIPI 57 ML R SR R LP LPSSC LCG + R+ALC C R+F P RC+QCA P+ Sbjct: 1 MLHRFFDWSRHFIRHLPTA--LPSSCALCGFSSRQALCVDCEQRFFHQTPPRCLQCASPL 58 Query: 58 PTT-AREIRCGDCLRHKPAFDATVVAGDYAAPADQLVLALKFGATLPLAPLLADMLREAL 116 P T A RCG CL PAFDAT+VAGDYAAP D LVLALKFG L LAPL A MLR+A+ Sbjct: 59 PHTGALAQRCGACLGDPPAFDATIVAGDYAAPVDHLVLALKFGNRLALAPLFASMLRDAI 118 Query: 117 GHYTERGLPLPTLMTAVPLGPGRLQERGFNQSLEIARPLAHALDVRLEPQLLVRLRDTQA 176 E +P L+TAVPLG RL ERGFNQ+LEIA+PLA A+ + L PQLL R RDT Sbjct: 119 --LREPAFAMPALLTAVPLGEKRLSERGFNQALEIAKPLAQAIAIPLAPQLLERTRDTLM 176 Query: 177 QATLPNDERKRNMRRAFVVPTTAMNHVRGAHIGVVDDVITTGETLNEIAETLKRFGARRV 236 Q+ L ER RNMR AFV+P A VRG H+GVVDDV+TTG TLNEIA TLKR GA RV Sbjct: 177 QSMLHPAERHRNMRHAFVLPANADVLVRGRHVGVVDDVMTTGVTLNEIAATLKRHGAVRV 236 Query: 237 TNIVFARTVAK 247 TN+VFART K Sbjct: 237 TNLVFARTPPK 247 >ref|YP_003777542.1| amidophosphoribosyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ65634.1| amidophosphoribosyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 132/232 (56%), Positives = 173/232 (74%), Gaps = 4/232 (1%) Query: 18 LLPSSCVLCGQTDREALCQSCRTRYFSIRPRRCVQCAIPIPTTAREIRCGDCLRHKPAFD 77 LLPS+C LCG RE LC C R+++ + RRC+QCA+P+P T +E+RCG CL+ +PAFD Sbjct: 66 LLPSACALCGAEGREILCAPCHKRFYTRQHRRCIQCAMPMPVTGKELRCGACLKDRPAFD 125 Query: 78 ATVVAGDYAAPADQLVLALKFGATLPLAPLLADMLREALGHY----TERGLPLPTLMTAV 133 AT+VA DY AP+DQL LALKFG L LAPLLA ++ +A ++ LP+P+L+ V Sbjct: 126 ATIVATDYFAPSDQLALALKFGGDLRLAPLLARLIHDASRRNPVPGSDVALPMPSLLAPV 185 Query: 134 PLGPGRLQERGFNQSLEIARPLAHALDVRLEPQLLVRLRDTQAQATLPNDERKRNMRRAF 193 PLG RLQERGFNQ+LEIA+PL+ + + L+PQLL R ++T+AQ+ LP R RN+R AF Sbjct: 186 PLGRTRLQERGFNQALEIAKPLSQLMGLPLQPQLLERKKETEAQSALPVGARARNVRSAF 245 Query: 194 VVPTTAMNHVRGAHIGVVDDVITTGETLNEIAETLKRFGARRVTNIVFARTV 245 +P M+ VRG H+G+VDDV+TTG TLNE+A LKR GARRVTN+VFART+ Sbjct: 246 ALPFATMDQVRGLHVGIVDDVMTTGATLNEVAIVLKRHGARRVTNLVFARTL 297 >ref|YP_004754652.1| competence protein F [Collimonas fungivorans Ter331] gb|AAT42382.1| putative amidophosphoribosyltransferase [Collimonas fungivorans Ter331] gb|AEK63829.1| Competence protein F [Collimonas fungivorans Ter331] Length = 236 Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 126/231 (54%), Positives = 164/231 (70%), Gaps = 5/231 (2%) Query: 19 LPSSCVLCGQTDREALCQSCRTRYFSIRPRRCVQCAIPIPTTARE--IRCGDCLRHKPAF 76 +PS C LCG++ ++ +C C YFS RP RC+QCA +P + CG+CL+ AF Sbjct: 5 MPSCCALCGRSGKQVICDGCSGHYFSGRPPRCIQCANRLPRLDGDNPALCGNCLKQARAF 64 Query: 77 DATVVAGDYAAPADQLVLALKFGATLPLAPLLADMLREA--LGHYTERGLPLPTLMTAVP 134 DAT+VA DY APAD+LVLALKFG L LAP A ML A +G + + LP ++TAVP Sbjct: 65 DATIVACDYTAPADRLVLALKFGGQLALAPAFAQMLFAASRIGVHPGQQPDLPDILTAVP 124 Query: 135 LGPGRLQERGFNQSLEIARPLAHALDVRLEPQLLVRLRDTQAQATLPN-DERKRNMRRAF 193 L RLQ+RGFNQ+LEIARPLA L + L+ LL+R RDT Q+ P+ ++R+RN+R+AF Sbjct: 125 LSAQRLQQRGFNQALEIARPLARLLGLGLQHGLLLRQRDTLPQSLAPDLEQRRRNLRQAF 184 Query: 194 VVPTTAMNHVRGAHIGVVDDVITTGETLNEIAETLKRFGARRVTNIVFART 244 +VP AM +RG HIGVVDDV+TTGETL+ +A+TL+R GA R+TN VFART Sbjct: 185 IVPPAAMMQIRGRHIGVVDDVMTTGETLHALAQTLRRHGASRITNFVFART 235 >ref|ZP_08273189.1| Competence protein F [Oxalobacteraceae bacterium IMCC9480] gb|EGF33333.1| Competence protein F [Oxalobacteraceae bacterium IMCC9480] Length = 210 Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 120/209 (57%), Positives = 145/209 (69%), Gaps = 3/209 (1%) Query: 36 QSCRTRYFSIRPRRCVQCAIPIPTTAREIRCGDCLRHKPAFDATVVAGDYAAPADQLVLA 95 CR ++F RC CA+P RCG CLR+ PAFDAT+VA DY P DQLVLA Sbjct: 2 HPCRLQFFRHTGSRCQCCALPCTVG---TRCGACLRNPPAFDATIVATDYQPPIDQLVLA 58 Query: 96 LKFGATLPLAPLLADMLREALGHYTERGLPLPTLMTAVPLGPGRLQERGFNQSLEIARPL 155 LKFGA LPLA L D+L +A P L+ VPLGP RL ERG+NQ+LEIARPL Sbjct: 59 LKFGAALPLARLFGDLLSDAQITAAPDRRDWPDLIAPVPLGPQRLIERGYNQALEIARPL 118 Query: 156 AHALDVRLEPQLLVRLRDTQAQATLPNDERKRNMRRAFVVPTTAMNHVRGAHIGVVDDVI 215 A +L + L P+LLVR+R+T AQA +P +R +N+ AFVVP AM V G H+GVVDDV+ Sbjct: 119 ARSLTLPLSPRLLVRVRETGAQAAMPARQRHKNIHAAFVVPVQAMASVDGRHVGVVDDVM 178 Query: 216 TTGETLNEIAETLKRFGARRVTNIVFART 244 TTG TL+E+A TLKR+GARRVTN+VFART Sbjct: 179 TTGATLHEVAATLKRYGARRVTNLVFART 207 >ref|YP_001354845.1| Comf family protein [Janthinobacterium sp. Marseille] gb|ABR89423.1| Comf family protein [Janthinobacterium sp. Marseille] Length = 217 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 118/219 (53%), Positives = 143/219 (65%), Gaps = 6/219 (2%) Query: 1 MLSRLLTISRRL-LPFGRLLPSSCVLCGQTDREALCQSCRTRYFSIRPRRCVQCAIPIPT 59 ML R + SRR L LP+SC LC ALC CR ++FS RP RC QCA P+ T Sbjct: 1 MLYRFIDWSRRCALRLPATLPTSCALCSIPGTSALCAPCRGQFFSRRPPRCTQCAYPL-T 59 Query: 60 TAREIR--CGDCLRHKPAFDATVVAGDYAAPADQLVLALKFGATLPLAPLLADMLREALG 117 R CG+CLR AFDAT+VAGDY+AP D LVLALKFG L LAPL A ++ +AL Sbjct: 60 HGEHARSFCGNCLRTPRAFDATIVAGDYSAPIDHLVLALKFGNQLALAPLFAQLIVDAL- 118 Query: 118 HYTERGLPLPTLMTAVPLGPGRLQERGFNQSLEIARPLAHALDVRLEPQLLVRLRDTQAQ 177 ER +PT+M AVPLG RL ERGFNQ+LEIARPL+ A+ + L PQL+ R R+T Q Sbjct: 119 -LRERAFAMPTIMAAVPLGEKRLAERGFNQALEIARPLSKAIAIPLLPQLIQRSRETAMQ 177 Query: 178 ATLPNDERKRNMRRAFVVPTTAMNHVRGAHIGVVDDVIT 216 ++LP D R NMR AF + A + VRG HI +VDDV+T Sbjct: 178 SSLPPDARHHNMRDAFTLAPQAADLVRGQHIAIVDDVLT 216