BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0536.p         (144 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004751213.1| cytochrome c oxidase polypeptide II [Collimo...   228   2e-58
ref|YP_003777539.1| cytochrome c oxidase polypeptide II precurso...   220   5e-56
ref|YP_001354842.1| cytochrome c oxidase subunit II [Janthinobac...   215   2e-54
ref|YP_001101153.1| cytochrome C oxidase polypeptide II (cytochr...   210   5e-53
ref|ZP_08273192.1| Cytochrome c oxidase polypeptide II [Oxalobac...   200   6e-50

>ref|YP_004751213.1| cytochrome c oxidase polypeptide II [Collimonas fungivorans Ter331]
 gb|AEK60390.1| Cytochrome c oxidase polypeptide II [Collimonas fungivorans Ter331]
          Length = 390

 Score =  228 bits (581), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 113/125 (90%), Positives = 117/125 (93%), Gaps = 4/125 (3%)

Query: 1   VPSWAWGDKVVDSQGGPAVLQTNFQPPVTQIAEQIYDLHHLMLIICLVIFVAVFGVMFYS 60
           +PSWA    VVDS GGPAVLQ NFQPPVTQIA+QIYDLHHLMLIICLVIF+AVFGVMFYS
Sbjct: 21  MPSWA----VVDSPGGPAVLQMNFQPPVTQIAQQIYDLHHLMLIICLVIFLAVFGVMFYS 76

Query: 61  ILKHRKSLGHKSASFHESTTVEIAWTVVPFLIVIGMALPATKTVVAMKDTSNADLTIKAT 120
           ILKHRKSLGHKSASFHEST VEIAWTVVPFLIVIGMALPATKTVVAMKDTSNAD+TIK T
Sbjct: 77  ILKHRKSLGHKSASFHESTGVEIAWTVVPFLIVIGMALPATKTVVAMKDTSNADVTIKVT 136

Query: 121 GMQWK 125
           GMQWK
Sbjct: 137 GMQWK 141


>ref|YP_003777539.1| cytochrome c oxidase polypeptide II precursor transmembrane protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ65631.1| cytochrome c oxidase polypeptide II precursor (cytochrome aa3
           subunit 2) transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 386

 Score =  220 bits (561), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 110/135 (81%), Positives = 119/135 (88%), Gaps = 4/135 (2%)

Query: 1   VPSWAWGDKVVDSQGGPAVLQTNFQPPVTQIAEQIYDLHHLMLIICLVIFVAVFGVMFYS 60
           +P+WA    VVDS GGPAVLQ NFQPPVT+IAEQIYDLH LMLIICLVIFVAVFGVMFYS
Sbjct: 21  LPAWA----VVDSPGGPAVLQMNFQPPVTKIAEQIYDLHILMLIICLVIFVAVFGVMFYS 76

Query: 61  ILKHRKSLGHKSASFHESTTVEIAWTVVPFLIVIGMALPATKTVVAMKDTSNADLTIKAT 120
           I+KHRKS+GHK+++FHEST VEIAWTVVPFLIVIGMALPATKTVVAMKDTSNADLTIK T
Sbjct: 77  IIKHRKSVGHKASTFHESTAVEIAWTVVPFLIVIGMALPATKTVVAMKDTSNADLTIKVT 136

Query: 121 GMQWKXADLTIKATG 135
           GMQWK     +K  G
Sbjct: 137 GMQWKWGYDYLKGEG 151


>ref|YP_001354842.1| cytochrome c oxidase subunit II [Janthinobacterium sp. Marseille]
 gb|ABR90493.1| cytochrome c oxidase subunit II [Janthinobacterium sp. Marseille]
          Length = 386

 Score =  215 bits (547), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 108/125 (86%), Positives = 111/125 (88%), Gaps = 4/125 (3%)

Query: 1   VPSWAWGDKVVDSQGGPAVLQTNFQPPVTQIAEQIYDLHHLMLIICLVIFVAVFGVMFYS 60
           +PSWA    V DS GGPAV Q NF  PVTQIAEQIY LH LMLIICLVIFVAVFGVMFYS
Sbjct: 21  MPSWA----VTDSPGGPAVRQLNFHEPVTQIAEQIYSLHTLMLIICLVIFVAVFGVMFYS 76

Query: 61  ILKHRKSLGHKSASFHESTTVEIAWTVVPFLIVIGMALPATKTVVAMKDTSNADLTIKAT 120
           I KHRKSLGHKSA+FHEST VEIAWTVVPFLIVIGMALPATKTVVAMKDTSNAD+TIKAT
Sbjct: 77  IFKHRKSLGHKSATFHESTAVEIAWTVVPFLIVIGMALPATKTVVAMKDTSNADITIKAT 136

Query: 121 GMQWK 125
           GMQWK
Sbjct: 137 GMQWK 141


>ref|YP_001101153.1| cytochrome C oxidase polypeptide II (cytochrome AA3 subunit 2)
           transmembrane protein [Herminiimonas arsenicoxydans]
 emb|CAL63032.1| Cytochrome c oxidase, subunit II (Cytochrome aa3 subunit 2)
           [Herminiimonas arsenicoxydans]
          Length = 386

 Score =  210 bits (535), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 104/125 (83%), Positives = 112/125 (89%), Gaps = 4/125 (3%)

Query: 1   VPSWAWGDKVVDSQGGPAVLQTNFQPPVTQIAEQIYDLHHLMLIICLVIFVAVFGVMFYS 60
           +PSWA    V DS GGPAV Q NF  PVTQIAEQIY LH L+L+ICLVIF+AVFGVMFYS
Sbjct: 21  LPSWA----VTDSPGGPAVRQLNFHQPVTQIAEQIYSLHTLLLVICLVIFLAVFGVMFYS 76

Query: 61  ILKHRKSLGHKSASFHESTTVEIAWTVVPFLIVIGMALPATKTVVAMKDTSNADLTIKAT 120
           I+KHRKS+GHKSA+FHEST VEIAWTVVPFLIVIGMALPATKTVVAMKDTSNAD+TIKAT
Sbjct: 77  IVKHRKSVGHKSATFHESTAVEIAWTVVPFLIVIGMALPATKTVVAMKDTSNADITIKAT 136

Query: 121 GMQWK 125
           GMQWK
Sbjct: 137 GMQWK 141


>ref|ZP_08273192.1| Cytochrome c oxidase polypeptide II [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33336.1| Cytochrome c oxidase polypeptide II [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 415

 Score =  200 bits (509), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 99/127 (77%), Positives = 107/127 (84%)

Query: 9   KVVDSQGGPAVLQTNFQPPVTQIAEQIYDLHHLMLIICLVIFVAVFGVMFYSILKHRKSL 68
           +V D  GGPAV Q N  P VT+IAEQIY LH  MLIICLVIFVAVFGVMFYSILKHRKSL
Sbjct: 51  EVQDIPGGPAVRQLNLHPGVTKIAEQIYSLHTFMLIICLVIFVAVFGVMFYSILKHRKSL 110

Query: 69  GHKSASFHESTTVEIAWTVVPFLIVIGMALPATKTVVAMKDTSNADLTIKATGMQWKXAD 128
           GHKSA+FHEST VEIAWT+VPF+IVI MALPAT+TVVAMKDTSNAD+TIKATGMQWK   
Sbjct: 111 GHKSATFHESTAVEIAWTIVPFVIVIAMALPATRTVVAMKDTSNADITIKATGMQWKWGY 170

Query: 129 LTIKATG 135
             +K  G
Sbjct: 171 DYLKGEG 177