BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0534.p (744 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002944821.1| PREDICTED: hypothetical protein LOC100486986... 575 e-162 ref|NP_518484.1| cytochrome C oxidase polypeptide I [Ralstonia s... 568 e-159 emb|CBJ39293.1| cytochrome C oxidase polypeptide I (cytochrome A... 568 e-159 ref|YP_003746885.1| cytochrome C oxidase polypeptide i (cytochro... 568 e-159 gb|AEG70333.1| cytochrome c oxidase polypeptideI(cytochrome aa3 ... 568 e-159 >ref|XP_002944821.1| PREDICTED: hypothetical protein LOC100486986 [Xenopus (Silurana) tropicalis] Length = 568 Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust. Identities = 285/427 (66%), Positives = 338/427 (79%), Gaps = 16/427 (3%) Query: 320 TGMQWKWGYDYLKGEGEGISFLSNLATPREQITDASLKKND--NYLLEVDNPVVVPVNKK 377 TG QWKWGYDYL+GEGEG++++S L + ++ + N +YLL+VD P+VVPV++K Sbjct: 146 TGYQWKWGYDYLRGEGEGLAYISTLDSSHRAMSSSGNVANAPADYLLKVDYPLVVPVDRK 205 Query: 378 VRIITTANDVIHSWTIPAFGVKQDAIPGFVRDTWFKAEKIGTYRGQCVELCGKDHAFMPI 437 VR+ITTANDVIHS+ +PAFG+KQDAIPGFVRDTWF+AE++G Y GQC ELCGK+HA+MPI Sbjct: 206 VRVITTANDVIHSFMVPAFGIKQDAIPGFVRDTWFRAERVGDYYGQCAELCGKEHAYMPI 265 Query: 438 VVNVVSDADYKTWVDGKKKEMAAKADDPTKVWTIDELKQRGEKVYTSNCVVCHQANGKGV 497 V V+S DY WV +KK+ AA+ DDPTKVWT+ ++ RGEKVY ++C CHQANGKG Sbjct: 266 HVRVLSAQDYSAWVADEKKKAAARLDDPTKVWTLADILPRGEKVYAAHCAACHQANGKGA 325 Query: 498 PGAFPALDGDPVVNGPKAAQIAVVLNGKNAXAAQIAVVLNGTMLIAVPTGVKIFNWIATM 557 GA LDG A+V + A Q+ + TMLI+VPTGVK+FNW+ATM Sbjct: 326 -GAIKPLDGS-----------AIVRDDDYAKQLQL-FFMYATMLISVPTGVKVFNWVATM 372 Query: 558 WRGSMTFETPMLFSVGFIFVFTMGGFTGLILAVTPIDIQMQDTYYVVAHFHYVLVAGSLF 617 WRGSMTFETPMLF+VGFIFVF++GGFTGLILA+ P+DIQ+QDTYYVVAHFHYVLVAGSLF Sbjct: 373 WRGSMTFETPMLFAVGFIFVFSIGGFTGLILAMAPLDIQLQDTYYVVAHFHYVLVAGSLF 432 Query: 618 ALFAGFYYWGPKWTGFMYNEWRGKFHFWASLITFNVTFFPMHFLGLAGMPRRYADYPAQF 677 ALF+G YYW PKWTG MY+E RG+ HFW SLITFNVTFFPMHFLGLAGMPRRYADYP QF Sbjct: 433 ALFSGAYYWLPKWTGVMYHETRGRIHFWGSLITFNVTFFPMHFLGLAGMPRRYADYPMQF 492 Query: 678 TDFNMVASIGALGFGLSQVYFLFFVVIPSIKG-GVKAEAKPWEGAEGLEWTVPSPAPFHT 736 DFNMVAS+G LGFGL QVYF VV P+++G G KA PWEGAEGLEW VPSPAP HT Sbjct: 493 ADFNMVASVGGLGFGLMQVYFFLAVVWPAMRGRGPKAPQSPWEGAEGLEWEVPSPAPAHT 552 Query: 737 FETPPTV 743 F TPP + Sbjct: 553 FVTPPKL 559 >ref|NP_518484.1| cytochrome C oxidase polypeptide I [Ralstonia solanacearum GMI1000] emb|CAD13891.1| probable cytochrome c oxidase polypeptideI(cytochrome aa3 subunit 1) transmembrane protein [Ralstonia solanacearum GMI1000] Length = 534 Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust. Identities = 282/322 (87%), Positives = 295/322 (91%), Gaps = 8/322 (2%) Query: 3 TTVVDHGHDHSHAH--DHGAHSHDDHDHPHGWRRWIFATNHKDIGTLYLWFSFTMLLSGG 60 +T + H DH+H H DH HDHPHGWRRW+FATNHKDIGTLYL FSFTMLLSGG Sbjct: 2 STAITHPQDHAHGHGDDHA------HDHPHGWRRWLFATNHKDIGTLYLLFSFTMLLSGG 55 Query: 61 VLALLIRAELFQPGLQFFRPEFFNQLTTMHGLVMVFGAIMPAFVGFANWMIPLQIGASDM 120 LALLIR ELF+PGLQFF PE FNQ TT+HGLVMVFGAIMPAFVGFANWMIPLQ+GASDM Sbjct: 56 TLALLIRLELFEPGLQFFHPELFNQFTTLHGLVMVFGAIMPAFVGFANWMIPLQVGASDM 115 Query: 121 AFARMNNFSFWLLPPAALLLASSFLVPGGATAAGWTLYAPLSTQMGPGMDMGIFAMHIMG 180 AFARMNNFSFWLLPPAA+LL SF VPGGATAAGWTLYAPLS QMGPGMDM IFA+HIMG Sbjct: 116 AFARMNNFSFWLLPPAAILLVGSFFVPGGATAAGWTLYAPLSVQMGPGMDMAIFAVHIMG 175 Query: 181 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRH 240 ASSIMG+INIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITM LTDRH Sbjct: 176 ASSIMGAINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMVLTDRH 235 Query: 241 FGTSFFNAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIIPAFARKQLFGYASMVY 300 FGTSFF+AAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQI+PAFARK LFGY+SMVY Sbjct: 236 FGTSFFSAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIVPAFARKPLFGYSSMVY 295 Query: 301 ATASIAILSFIVWAHHMFTTGM 322 ATASIAILSFIVWAHHMFTTGM Sbjct: 296 ATASIAILSFIVWAHHMFTTGM 317 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 177/209 (84%), Positives = 191/209 (91%) Query: 536 LNGTMLIAVPTGVKIFNWIATMWRGSMTFETPMLFSVGFIFVFTMGGFTGLILAVTPIDI 595 + TMLIAVPTGVKIFNWIATMWRGSMTFETPMLF++GFIFVFT+GGFTGLILAV PIDI Sbjct: 326 MYATMLIAVPTGVKIFNWIATMWRGSMTFETPMLFALGFIFVFTIGGFTGLILAVAPIDI 385 Query: 596 QMQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWTGFMYNEWRGKFHFWASLITFNVTF 655 Q+QDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKW+G+MYNE RG+ HFW S+I FN+TF Sbjct: 386 QLQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWSGYMYNETRGQIHFWGSMIFFNLTF 445 Query: 656 FPMHFLGLAGMPRRYADYPAQFTDFNMVASIGALGFGLSQVYFLFFVVIPSIKGGVKAEA 715 FPMHFLGLAGMPRRYADYP QF DFN +ASIGALGFGL QVYF FFVV+PS +GG KA Sbjct: 446 FPMHFLGLAGMPRRYADYPQQFADFNAIASIGALGFGLMQVYFFFFVVLPSYRGGEKAAD 505 Query: 716 KPWEGAEGLEWTVPSPAPFHTFETPPTVK 744 KPW+GAEGLEWTVPSPAPFHTFE PP VK Sbjct: 506 KPWDGAEGLEWTVPSPAPFHTFEEPPHVK 534 >emb|CBJ39293.1| cytochrome C oxidase polypeptide I (cytochrome AA3 subunit 1) [Ralstonia solanacearum CMR15] Length = 534 Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust. Identities = 281/322 (87%), Positives = 295/322 (91%), Gaps = 8/322 (2%) Query: 3 TTVVDHGHDHSHAH--DHGAHSHDDHDHPHGWRRWIFATNHKDIGTLYLWFSFTMLLSGG 60 +T + H DH+H H DH HDHPHGWRRW+FATNHKDIGTLYL FSFTMLLSGG Sbjct: 2 STAITHPQDHAHGHGDDHA------HDHPHGWRRWLFATNHKDIGTLYLLFSFTMLLSGG 55 Query: 61 VLALLIRAELFQPGLQFFRPEFFNQLTTMHGLVMVFGAIMPAFVGFANWMIPLQIGASDM 120 LALLIR ELF+PGLQFF PE FNQ TT+HGLVMVFGAIMPAFVGFANWMIPLQ+GASDM Sbjct: 56 TLALLIRLELFEPGLQFFHPELFNQFTTLHGLVMVFGAIMPAFVGFANWMIPLQVGASDM 115 Query: 121 AFARMNNFSFWLLPPAALLLASSFLVPGGATAAGWTLYAPLSTQMGPGMDMGIFAMHIMG 180 AFARMNNFSFWLLPPAA+LL SF VPGGATAAGWTLYAPLS QMGPGMDM IFA+HIMG Sbjct: 116 AFARMNNFSFWLLPPAAILLVGSFFVPGGATAAGWTLYAPLSVQMGPGMDMAIFAVHIMG 175 Query: 181 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRH 240 ASSIMG+INIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITM LTDRH Sbjct: 176 ASSIMGAINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMVLTDRH 235 Query: 241 FGTSFFNAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIIPAFARKQLFGYASMVY 300 FGTSFF+AAGGGDPVMYQHIFWFFGHPEVYIMILPAFGI+SQI+PAFARK LFGY+SMVY Sbjct: 236 FGTSFFSAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIISQIVPAFARKPLFGYSSMVY 295 Query: 301 ATASIAILSFIVWAHHMFTTGM 322 ATASIAILSFIVWAHHMFTTGM Sbjct: 296 ATASIAILSFIVWAHHMFTTGM 317 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 176/209 (84%), Positives = 191/209 (91%) Query: 536 LNGTMLIAVPTGVKIFNWIATMWRGSMTFETPMLFSVGFIFVFTMGGFTGLILAVTPIDI 595 + TMLIAVPTGVKIFNWIATMWRGSMTFETPMLF++GFIFVFT+GGFTGLILAV P+DI Sbjct: 326 MYATMLIAVPTGVKIFNWIATMWRGSMTFETPMLFALGFIFVFTIGGFTGLILAVAPVDI 385 Query: 596 QMQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWTGFMYNEWRGKFHFWASLITFNVTF 655 Q+QDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKW+G+MYNE RG+ HFW S+I FN+TF Sbjct: 386 QLQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWSGYMYNETRGQIHFWGSMIFFNLTF 445 Query: 656 FPMHFLGLAGMPRRYADYPAQFTDFNMVASIGALGFGLSQVYFLFFVVIPSIKGGVKAEA 715 FPMHFLGLAGMPRRYADYP QF DFN +ASIGALGFGL QVYF FFVV+PS +GG KA Sbjct: 446 FPMHFLGLAGMPRRYADYPQQFADFNAIASIGALGFGLMQVYFFFFVVLPSYRGGEKALD 505 Query: 716 KPWEGAEGLEWTVPSPAPFHTFETPPTVK 744 KPW+GAEGLEWTVPSPAPFHTFE PP VK Sbjct: 506 KPWDGAEGLEWTVPSPAPFHTFEEPPHVK 534 >ref|YP_003746885.1| cytochrome C oxidase polypeptide i (cytochrome aa3 subunit 1) [Ralstonia solanacearum CFBP2957] emb|CBJ44302.1| cytochrome C oxidase polypeptide I (cytochrome AA3 subunit 1) [Ralstonia solanacearum CFBP2957] Length = 534 Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust. Identities = 282/322 (87%), Positives = 294/322 (91%), Gaps = 8/322 (2%) Query: 3 TTVVDHGHDHSHAH--DHGAHSHDDHDHPHGWRRWIFATNHKDIGTLYLWFSFTMLLSGG 60 +T + H DH+H H DH HDHPHGWRRW+FATNHKDIGTLYL FSF MLLSGG Sbjct: 2 STAITHPQDHAHGHGDDHA------HDHPHGWRRWLFATNHKDIGTLYLLFSFAMLLSGG 55 Query: 61 VLALLIRAELFQPGLQFFRPEFFNQLTTMHGLVMVFGAIMPAFVGFANWMIPLQIGASDM 120 LALLIR ELF+PGLQFF PE FNQ TT+HGLVMVFGAIMPAFVGFANWMIPLQ+GASDM Sbjct: 56 TLALLIRLELFEPGLQFFHPELFNQFTTLHGLVMVFGAIMPAFVGFANWMIPLQVGASDM 115 Query: 121 AFARMNNFSFWLLPPAALLLASSFLVPGGATAAGWTLYAPLSTQMGPGMDMGIFAMHIMG 180 AFARMNNFSFWLLPPAA+LL SF VPGGATAAGWTLYAPLS QMGPGMDM IFA+HIMG Sbjct: 116 AFARMNNFSFWLLPPAAILLVGSFFVPGGATAAGWTLYAPLSVQMGPGMDMAIFAVHIMG 175 Query: 181 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRH 240 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITM LTDRH Sbjct: 176 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMVLTDRH 235 Query: 241 FGTSFFNAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIIPAFARKQLFGYASMVY 300 FGTSFF+AAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQI+PAFARK LFGY+SMVY Sbjct: 236 FGTSFFSAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIVPAFARKPLFGYSSMVY 295 Query: 301 ATASIAILSFIVWAHHMFTTGM 322 ATASIAILSFIVWAHHMFTTGM Sbjct: 296 ATASIAILSFIVWAHHMFTTGM 317 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 177/209 (84%), Positives = 191/209 (91%) Query: 536 LNGTMLIAVPTGVKIFNWIATMWRGSMTFETPMLFSVGFIFVFTMGGFTGLILAVTPIDI 595 + TMLIAVPTGVKIFNWIATMWRGSMTFETPMLF++GFIFVFT+GGFTGLILAV PIDI Sbjct: 326 MYATMLIAVPTGVKIFNWIATMWRGSMTFETPMLFALGFIFVFTIGGFTGLILAVAPIDI 385 Query: 596 QMQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWTGFMYNEWRGKFHFWASLITFNVTF 655 Q+QDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKW+G+MYNE RG+ HFW S+I FN+TF Sbjct: 386 QLQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWSGYMYNETRGQIHFWGSMIFFNLTF 445 Query: 656 FPMHFLGLAGMPRRYADYPAQFTDFNMVASIGALGFGLSQVYFLFFVVIPSIKGGVKAEA 715 FPMHFLGLAGMPRRYADYP QF DFN +ASIGALGFGL QVYF FFVV+PS +GG KA Sbjct: 446 FPMHFLGLAGMPRRYADYPQQFADFNAIASIGALGFGLMQVYFFFFVVLPSYRGGEKAID 505 Query: 716 KPWEGAEGLEWTVPSPAPFHTFETPPTVK 744 KPWEGAEGLEWTVPSPAPFHTFE PP V+ Sbjct: 506 KPWEGAEGLEWTVPSPAPFHTFEEPPHVR 534 >gb|AEG70333.1| cytochrome c oxidase polypeptideI(cytochrome aa3 subunit 1) protein [Ralstonia solanacearum Po82] Length = 534 Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust. Identities = 281/322 (87%), Positives = 294/322 (91%), Gaps = 8/322 (2%) Query: 3 TTVVDHGHDHSHAH--DHGAHSHDDHDHPHGWRRWIFATNHKDIGTLYLWFSFTMLLSGG 60 +T + H DH+H H DH HDHPHGWRRW+FATNHKDIGTLYL FSF MLLSGG Sbjct: 2 STAITHPQDHAHGHGDDHA------HDHPHGWRRWLFATNHKDIGTLYLLFSFAMLLSGG 55 Query: 61 VLALLIRAELFQPGLQFFRPEFFNQLTTMHGLVMVFGAIMPAFVGFANWMIPLQIGASDM 120 LALLIR ELF+PGLQFF PE FNQ TT+HGLVMVFGAIMPAFVGFANWMIPLQ+GASDM Sbjct: 56 TLALLIRLELFEPGLQFFHPELFNQFTTLHGLVMVFGAIMPAFVGFANWMIPLQVGASDM 115 Query: 121 AFARMNNFSFWLLPPAALLLASSFLVPGGATAAGWTLYAPLSTQMGPGMDMGIFAMHIMG 180 AFARMNNFSFWLLPPAA+LL SF VPGGATAAGWTLYAPLS QMGPGMDM IFA+HIMG Sbjct: 116 AFARMNNFSFWLLPPAAILLVGSFFVPGGATAAGWTLYAPLSVQMGPGMDMAIFAVHIMG 175 Query: 181 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRH 240 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITM LTDRH Sbjct: 176 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMVLTDRH 235 Query: 241 FGTSFFNAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIIPAFARKQLFGYASMVY 300 FGTSFF+AAGGGDPVMYQHIFWFFGHPEVYIMILPAFGI+SQI+PAFARK LFGY+SMVY Sbjct: 236 FGTSFFSAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIISQIVPAFARKPLFGYSSMVY 295 Query: 301 ATASIAILSFIVWAHHMFTTGM 322 ATASIAILSFIVWAHHMFTTGM Sbjct: 296 ATASIAILSFIVWAHHMFTTGM 317 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 177/209 (84%), Positives = 190/209 (90%) Query: 536 LNGTMLIAVPTGVKIFNWIATMWRGSMTFETPMLFSVGFIFVFTMGGFTGLILAVTPIDI 595 + TMLIAVPTGVKIFNWIATMWRGSMTFETPMLF++GFIFVFT+GGFTGLILAV PIDI Sbjct: 326 MYATMLIAVPTGVKIFNWIATMWRGSMTFETPMLFALGFIFVFTIGGFTGLILAVAPIDI 385 Query: 596 QMQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWTGFMYNEWRGKFHFWASLITFNVTF 655 Q+QDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKW+G+MYNE RG+ HFW S+I FN+TF Sbjct: 386 QLQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWSGYMYNETRGQIHFWGSMIFFNLTF 445 Query: 656 FPMHFLGLAGMPRRYADYPAQFTDFNMVASIGALGFGLSQVYFLFFVVIPSIKGGVKAEA 715 FPMHFLGLAGMPRRYADYP QF DFN +ASIGALGFGL QVYF F VV+PS +GG KA Sbjct: 446 FPMHFLGLAGMPRRYADYPQQFADFNAIASIGALGFGLMQVYFFFCVVLPSYRGGEKAID 505 Query: 716 KPWEGAEGLEWTVPSPAPFHTFETPPTVK 744 KPWEGAEGLEWTVPSPAPFHTFE PP VK Sbjct: 506 KPWEGAEGLEWTVPSPAPFHTFEEPPHVK 534