BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0533.p (189 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777537.1| cytochrome C oxidase assembly transmembrane ... 336 1e-90 ref|YP_004751216.1| cytochrome oxidase biogenesis protein Cox11-... 331 4e-89 ref|YP_001354840.1| cytochrome c oxidase subunit XI assembly pro... 291 3e-77 ref|YP_001101150.1| cytochrome C oxidase assembly protein [Hermi... 288 2e-76 ref|YP_002980220.1| cytochrome C oxidase assembly protein [Ralst... 263 7e-69 >ref|YP_003777537.1| cytochrome C oxidase assembly transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65629.1| cytochrome C oxidase assembly transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 190 Score = 336 bits (861), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 157/178 (88%), Positives = 168/178 (94%) Query: 12 ERSLNRRMLGKLLVIAVLMFGFGYALIPVYKKICEVTGVNFLTPKDVTVEAPSNSQIDKS 71 ER LNR ML KLLV+AVLMFGFGYALIPVY+KICEVTGVNFLTPKDVTVEAP+N+QIDKS Sbjct: 13 ERGLNRVMLRKLLVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDVTVEAPANTQIDKS 72 Query: 72 RTVTIEFDGNSQGPWRFRPTVASMKVHPGEMTQVVYEVVNTQARSVDAQAIPSYAPQQSA 131 RT+T+EFDGN+QGPWRFRPTV SM+VHPGEMTQV YEVVNTQ+R+VDAQAIPSYAPQQSA Sbjct: 73 RTITVEFDGNAQGPWRFRPTVTSMQVHPGEMTQVTYEVVNTQSRNVDAQAIPSYAPQQSA 132 Query: 132 AFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPALPKDVTTITLSYTFFEIGGQAKKAS 189 AFFKKVECFCFTQQTLGPNQAKQMPVVFYIDP LPKDVTTITLSYTFFEI G+ K A Sbjct: 133 AFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPKLPKDVTTITLSYTFFEINGKDKTAG 190 >ref|YP_004751216.1| cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 [Collimonas fungivorans Ter331] gb|AEK60393.1| Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 [Collimonas fungivorans Ter331] Length = 193 Score = 331 bits (848), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 154/189 (81%), Positives = 171/189 (90%), Gaps = 1/189 (0%) Query: 2 SDSDKNDASPE-RSLNRRMLGKLLVIAVLMFGFGYALIPVYKKICEVTGVNFLTPKDVTV 60 +DS N E R LN++MLGKLLVIAVLMFGFGY L+PVYKKICEVTGVNFLTPKD TV Sbjct: 5 ADSQANQGKVESRKLNKQMLGKLLVIAVLMFGFGYGLVPVYKKICEVTGVNFLTPKDATV 64 Query: 61 EAPSNSQIDKSRTVTIEFDGNSQGPWRFRPTVASMKVHPGEMTQVVYEVVNTQARSVDAQ 120 EAP+N+Q+DKSRT+T+EFDGNSQGPWRFRPTV+S++VHPGEMTQVVYEVVN Q+R +DAQ Sbjct: 65 EAPANTQVDKSRTITVEFDGNSQGPWRFRPTVSSLQVHPGEMTQVVYEVVNKQSRKMDAQ 124 Query: 121 AIPSYAPQQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPALPKDVTTITLSYTFFE 180 AIPSYAPQQ+AAFFKKVECFCFTQQTLGPNQAK+MPVVFYIDPA+PKDV ITLSYTFFE Sbjct: 125 AIPSYAPQQAAAFFKKVECFCFTQQTLGPNQAKEMPVVFYIDPAIPKDVKLITLSYTFFE 184 Query: 181 IGGQAKKAS 189 I GQ KA Sbjct: 185 IAGQPDKAG 193 >ref|YP_001354840.1| cytochrome c oxidase subunit XI assembly protein [Janthinobacterium sp. Marseille] gb|ABR88511.1| cytochrome c oxidase subunit XI assembly protein [Janthinobacterium sp. Marseille] Length = 199 Score = 291 bits (745), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 132/186 (70%), Positives = 158/186 (84%) Query: 4 SDKNDASPERSLNRRMLGKLLVIAVLMFGFGYALIPVYKKICEVTGVNFLTPKDVTVEAP 63 ++ + LN +M GKL+VIAV+MFGFGY L+P+YK+ICE+TGVN LT +++ V+ Sbjct: 2 ENQTEDQKHSKLNTQMFGKLVVIAVMMFGFGYLLVPIYKQICEITGVNILTSQEMKVKPI 61 Query: 64 SNSQIDKSRTVTIEFDGNSQGPWRFRPTVASMKVHPGEMTQVVYEVVNTQARSVDAQAIP 123 NSQ+DKSRT+T+EFD N+QGP+RFRPTV SM+VHPGEM Q+VYEVVNTQARSV+AQAIP Sbjct: 62 DNSQVDKSRTITVEFDANTQGPFRFRPTVNSMQVHPGEMAQIVYEVVNTQARSVEAQAIP 121 Query: 124 SYAPQQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPALPKDVTTITLSYTFFEIGG 183 SYAPQQ+AA FKKVECFCF QQTL +QAKQMPVVFY+DPALPKDV TITLSYTFFEI G Sbjct: 122 SYAPQQAAAHFKKVECFCFQQQTLEASQAKQMPVVFYLDPALPKDVKTITLSYTFFEIAG 181 Query: 184 QAKKAS 189 + KKA Sbjct: 182 REKKAE 187 >ref|YP_001101150.1| cytochrome C oxidase assembly protein [Herminiimonas arsenicoxydans] emb|CAL63029.1| Cytochrome c oxidase assembly protein CtaG [Herminiimonas arsenicoxydans] Length = 192 Score = 288 bits (738), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 132/184 (71%), Positives = 158/184 (85%) Query: 6 KNDASPERSLNRRMLGKLLVIAVLMFGFGYALIPVYKKICEVTGVNFLTPKDVTVEAPSN 65 +N LN RM GKL VIAV+MFGFGY L+P+YK+ICE+TGVN LT +++ V+ N Sbjct: 2 ENQTESTGKLNGRMFGKLAVIAVMMFGFGYLLVPIYKQICELTGVNILTSQEMKVKPIDN 61 Query: 66 SQIDKSRTVTIEFDGNSQGPWRFRPTVASMKVHPGEMTQVVYEVVNTQARSVDAQAIPSY 125 SQIDKSRT+T+EFD N+ GP+RFRPTV+SM+VHPGEM+QV+YEVVNTQARSV+AQAIPSY Sbjct: 62 SQIDKSRTITVEFDANTTGPFRFRPTVSSMQVHPGEMSQVLYEVVNTQARSVEAQAIPSY 121 Query: 126 APQQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPALPKDVTTITLSYTFFEIGGQA 185 APQQ+AA FKKVECFCF Q+TLGPNQAKQMPVVFY+DPALP+DV TITLSYTFFE+ Sbjct: 122 APQQAAAHFKKVECFCFQQETLGPNQAKQMPVVFYLDPALPRDVKTITLSYTFFEVAKPE 181 Query: 186 KKAS 189 K+A+ Sbjct: 182 KQAT 185 >ref|YP_002980220.1| cytochrome C oxidase assembly protein [Ralstonia pickettii 12D] gb|ACS61548.1| cytochrome c oxidase assembly protein CtaG/Cox11 [Ralstonia pickettii 12D] Length = 202 Score = 263 bits (673), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 118/179 (65%), Positives = 146/179 (81%) Query: 3 DSDKNDASPERSLNRRMLGKLLVIAVLMFGFGYALIPVYKKICEVTGVNFLTPKDVTVEA 62 D +ND + ER LNR MLGKL V+ V+MFGFGYA++P+YKKICE+T +N L +D A Sbjct: 9 DPTQNDKALERGLNRSMLGKLAVVVVIMFGFGYAMVPLYKKICEITNINVLNTRDEDGGA 68 Query: 63 PSNSQIDKSRTVTIEFDGNSQGPWRFRPTVASMKVHPGEMTQVVYEVVNTQARSVDAQAI 122 NSQ+DK+RT+T+EFD NSQGP+RFRP SM VHPGE++Q+VYEVVN + R+V+AQAI Sbjct: 69 LRNSQVDKTRTITVEFDSNSQGPFRFRPVKNSMDVHPGEISQIVYEVVNKEGRTVEAQAI 128 Query: 123 PSYAPQQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPALPKDVTTITLSYTFFEI 181 PSYAP+Q+ FFKK+ECFCF QQTL N++++MPVVF IDP LPKDV TITLSYTFFEI Sbjct: 129 PSYAPKQATEFFKKIECFCFKQQTLTANESREMPVVFVIDPDLPKDVKTITLSYTFFEI 187