BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0517.p (296 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777528.1| RNA polymerase sigma-32 factor protein [Herb... 563 e-158 ref|YP_004751227.1| RNA polymerase sigma factor [Collimonas fung... 548 e-154 ref|YP_001354832.1| RNA polymerase sigma-32 factor [Janthinobact... 531 e-149 ref|ZP_08275256.1| RNA polymerase sigma factor RpoH [Oxalobacter... 530 e-149 ref|YP_001101142.1| sigma H factor [Herminiimonas arsenicoxydans... 530 e-148 >ref|YP_003777528.1| RNA polymerase sigma-32 factor protein [Herbaspirillum seropedicae SmR1] gb|ADJ65620.1| RNA polymerase sigma-32 factor protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 275/299 (91%), Positives = 288/299 (96%), Gaps = 3/299 (1%) Query: 1 MKSA---TALMPVETNALALGFSGSLGNIDAYISAVNRLPMLTQAEEVSLARALREKNDL 57 MK+A TALMP E+NALALGFSGSLGNIDAYISAVNRLPMLT EEV LAR LREKNDL Sbjct: 1 MKTASAQTALMPAESNALALGFSGSLGNIDAYISAVNRLPMLTHEEEVKLARDLREKNDL 60 Query: 58 GAAQKLVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQNVRLVSYAMH 117 GAAQK+VLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDP QNVRLVSYAMH Sbjct: 61 GAAQKMVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPAQNVRLVSYAMH 120 Query: 118 WIKAEMHEYILKNWRLVKVATTKAQRKLFFNLRSHKTGLDAMTPAQVDALAKTLDVKREE 177 WIKAE+HEYILKNWRLVKVATTKAQRKLFFNLRSHK GLDAMTPAQV+ALAKTLDVKREE Sbjct: 121 WIKAEIHEYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVEALAKTLDVKREE 180 Query: 178 VIEMETRLSGRDVALEAPTDDDDDKFAPIAYLSSDNNEPTRVMEAKQYDRLQSEGLEAAL 237 VIEMETRLSGRD+ALE+PTDD+DDKFAPIAYLSSDN+EPTRV+EAKQYDRLQSEGLEAAL Sbjct: 181 VIEMETRLSGRDIALESPTDDEDDKFAPIAYLSSDNSEPTRVIEAKQYDRLQSEGLEAAL 240 Query: 238 SKLDDRSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKGSLQAFA 296 SKLD+RSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMK SLQA++ Sbjct: 241 SKLDERSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKTSLQAYS 299 >ref|YP_004751227.1| RNA polymerase sigma factor [Collimonas fungivorans Ter331] gb|AEK60404.1| RNA polymerase sigma factor [Collimonas fungivorans Ter331] Length = 299 Score = 548 bits (1411), Expect = e-154, Method: Compositional matrix adjust. Identities = 263/292 (90%), Positives = 283/292 (96%) Query: 5 TALMPVETNALALGFSGSLGNIDAYISAVNRLPMLTQAEEVSLARALREKNDLGAAQKLV 64 TALMP +T+ALALGFSG+LGNIDAYISAVNRLPMLT EE++LA+ LR+KNDLGAAQKLV Sbjct: 8 TALMPTDTSALALGFSGTLGNIDAYISAVNRLPMLTHDEEITLAQQLRDKNDLGAAQKLV 67 Query: 65 LSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQNVRLVSYAMHWIKAEMH 124 LSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQ VRLVSYAMHWIKAEMH Sbjct: 68 LSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQGVRLVSYAMHWIKAEMH 127 Query: 125 EYILKNWRLVKVATTKAQRKLFFNLRSHKTGLDAMTPAQVDALAKTLDVKREEVIEMETR 184 EYILKNWRLVKVATTKAQRKLFFNLRSHK GLDAMTPAQVDALAKTL+VKREEVIEMETR Sbjct: 128 EYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVDALAKTLNVKREEVIEMETR 187 Query: 185 LSGRDVALEAPTDDDDDKFAPIAYLSSDNNEPTRVMEAKQYDRLQSEGLEAALSKLDDRS 244 L+GRD+ALEAPTDDDDDKFAPIAYLS++ EP++V+EA++YDR+QSEGLE+ALSKLDDRS Sbjct: 188 LTGRDIALEAPTDDDDDKFAPIAYLSTEAQEPSKVLEAQRYDRMQSEGLESALSKLDDRS 247 Query: 245 RRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKGSLQAFA 296 RRIVEARWLANDDGSG+TLHELADEFGVSAERIRQIEAVALKKMKGSL AFA Sbjct: 248 RRIVEARWLANDDGSGSTLHELADEFGVSAERIRQIEAVALKKMKGSLAAFA 299 >ref|YP_001354832.1| RNA polymerase sigma-32 factor [Janthinobacterium sp. Marseille] gb|ABR89246.1| RNA polymerase sigma-32 factor [Janthinobacterium sp. Marseille] Length = 298 Score = 531 bits (1367), Expect = e-149, Method: Compositional matrix adjust. Identities = 258/296 (87%), Positives = 279/296 (94%), Gaps = 1/296 (0%) Query: 1 MKSATALMPVETNALALGFSGSLGNIDAYISAVNRLPMLTQAEEVSLARALREKNDLGAA 60 + ++TAL+P +N LALGFSG+LGNIDAYISAVNRLPMLT EE+SLAR LR++NDLGAA Sbjct: 4 VSASTALVP-NSNMLALGFSGALGNIDAYISAVNRLPMLTHEEEMSLARRLRDENDLGAA 62 Query: 61 QKLVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQNVRLVSYAMHWIK 120 QKLVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQ VRLVSY+MHWIK Sbjct: 63 QKLVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQGVRLVSYSMHWIK 122 Query: 121 AEMHEYILKNWRLVKVATTKAQRKLFFNLRSHKTGLDAMTPAQVDALAKTLDVKREEVIE 180 AEMHEYILKNWRLVKVATTKAQRKLFFNLRSHKTGLD+MTP QVD LAKTL+VKREEVIE Sbjct: 123 AEMHEYILKNWRLVKVATTKAQRKLFFNLRSHKTGLDSMTPDQVDELAKTLNVKREEVIE 182 Query: 181 METRLSGRDVALEAPTDDDDDKFAPIAYLSSDNNEPTRVMEAKQYDRLQSEGLEAALSKL 240 METRLSGRD+ALEAPTDD+DDKFAPIAYLSSD EPT+V+E++Q+DRLQ+EGL AL KL Sbjct: 183 METRLSGRDIALEAPTDDEDDKFAPIAYLSSDMQEPTKVLESQQFDRLQTEGLSNALGKL 242 Query: 241 DDRSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKGSLQAFA 296 D RSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKGSL A+A Sbjct: 243 DARSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKGSLAAYA 298 >ref|ZP_08275256.1| RNA polymerase sigma factor RpoH [Oxalobacteraceae bacterium IMCC9480] gb|EGF31276.1| RNA polymerase sigma factor RpoH [Oxalobacteraceae bacterium IMCC9480] Length = 298 Score = 530 bits (1366), Expect = e-149, Method: Compositional matrix adjust. Identities = 255/284 (89%), Positives = 273/284 (96%) Query: 13 NALALGFSGSLGNIDAYISAVNRLPMLTQAEEVSLARALREKNDLGAAQKLVLSHLRLVV 72 NALALGF+G+LGNID+YISAVNRLPMLT EE+SLAR LR++NDLGAAQ +VLSHLRLVV Sbjct: 15 NALALGFTGTLGNIDSYISAVNRLPMLTHEEEMSLARRLRDQNDLGAAQGMVLSHLRLVV 74 Query: 73 SIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQNVRLVSYAMHWIKAEMHEYILKNWR 132 SIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQ VRLVSYAMHWIKAEMHEYILKNWR Sbjct: 75 SIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQGVRLVSYAMHWIKAEMHEYILKNWR 134 Query: 133 LVKVATTKAQRKLFFNLRSHKTGLDAMTPAQVDALAKTLDVKREEVIEMETRLSGRDVAL 192 LVKVATTKAQRKLFFNLRSHKTGLD+MTPAQV+ALA+TL+VKREEVIEMETRLSGRD+AL Sbjct: 135 LVKVATTKAQRKLFFNLRSHKTGLDSMTPAQVEALAQTLNVKREEVIEMETRLSGRDIAL 194 Query: 193 EAPTDDDDDKFAPIAYLSSDNNEPTRVMEAKQYDRLQSEGLEAALSKLDDRSRRIVEARW 252 EAPTDD+DDKFAPIAYLSSD NEPT V+EA+QYDRLQS+GL AL+KLD+RSRRIVEARW Sbjct: 195 EAPTDDEDDKFAPIAYLSSDRNEPTNVLEAQQYDRLQSDGLSQALNKLDERSRRIVEARW 254 Query: 253 LANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKGSLQAFA 296 LANDDGSGATLHELA EFGVSAERIRQIEAVALKKMKGSL AFA Sbjct: 255 LANDDGSGATLHELAKEFGVSAERIRQIEAVALKKMKGSLAAFA 298 >ref|YP_001101142.1| sigma H factor [Herminiimonas arsenicoxydans] emb|CAL63021.1| RNA polymerase sigma-32 factor [Herminiimonas arsenicoxydans] Length = 298 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 255/294 (86%), Positives = 276/294 (93%) Query: 3 SATALMPVETNALALGFSGSLGNIDAYISAVNRLPMLTQAEEVSLARALREKNDLGAAQK 62 SA+ M +N ++LGFSG+LGNIDAYISAVNRLPMLT EE+SLA+ LR+ NDLGAAQK Sbjct: 5 SASTAMISPSNMMSLGFSGALGNIDAYISAVNRLPMLTHEEEISLAKRLRDDNDLGAAQK 64 Query: 63 LVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQNVRLVSYAMHWIKAE 122 LVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQ VRLVSY+MHWIKAE Sbjct: 65 LVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQGVRLVSYSMHWIKAE 124 Query: 123 MHEYILKNWRLVKVATTKAQRKLFFNLRSHKTGLDAMTPAQVDALAKTLDVKREEVIEME 182 MHEYILKNWRLVKVATTKAQRKLFFNLRSHKTGLDAMTP QV+ALAKTL+VKREEVIEME Sbjct: 125 MHEYILKNWRLVKVATTKAQRKLFFNLRSHKTGLDAMTPDQVEALAKTLNVKREEVIEME 184 Query: 183 TRLSGRDVALEAPTDDDDDKFAPIAYLSSDNNEPTRVMEAKQYDRLQSEGLEAALSKLDD 242 TRLSGRD+ALEAPTDD+DDKFAPIAYLSSD+ EPTRV+E+++YDRLQ+EGL +AL KLD Sbjct: 185 TRLSGRDIALEAPTDDEDDKFAPIAYLSSDSQEPTRVLESQRYDRLQTEGLSSALGKLDP 244 Query: 243 RSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKGSLQAFA 296 RSRRIVEARWLANDDGSGATLHELA+EFGVSAERIRQIE VALKKMKGSL AFA Sbjct: 245 RSRRIVEARWLANDDGSGATLHELANEFGVSAERIRQIETVALKKMKGSLAAFA 298