BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0502.p (304 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777517.1| drug/metabolite transporter (DMT) superfamil... 362 3e-98 emb|CAZ87491.1| putative Permease of the drug/metabolite transpo... 208 7e-52 ref|YP_004152564.1| hypothetical protein Varpa_0231 [Variovorax ... 207 1e-51 ref|YP_003642332.1| protein of unknown function DUF6 transmembra... 206 4e-51 ref|YP_001022752.1| putative transmembrane protein [Methylibium ... 196 4e-48 >ref|YP_003777517.1| drug/metabolite transporter (DMT) superfamily permease [Herbaspirillum seropedicae SmR1] gb|ADJ65609.1| permease of the drug/metabolite transporter (DMT) superfamily protein [Herbaspirillum seropedicae SmR1] Length = 295 Score = 362 bits (930), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 179/287 (62%), Positives = 229/287 (79%) Query: 12 MQHIPPRAVGALLVNTTIWGLSWIAFKSLQQQGIHPLWATAIIFSCCTIWMLLLKRKSLR 71 MQ +P AV ALLVNTTIWGLSW A ++L+ G+HP+W TA IF CT+ ++ L+ + L Sbjct: 1 MQVLPKSAVAALLVNTTIWGLSWTATRALEGMGLHPVWTTAAIFGLCTLLLVALRYRDLP 60 Query: 72 EIGKHPELVYVAIASGLTNTAFNGAVAFGDVVRVVLLFYLMPIWAVILARLVLHEPITQR 131 ++ +HP L++V +A+GLTN+ FN AVA+GDVVRV+LLFYLMP+W VILARLVLHE IT R Sbjct: 61 QLWRHPALLWVGLATGLTNSTFNVAVAYGDVVRVILLFYLMPVWTVILARLVLHEAITPR 120 Query: 132 ALLRIALGLTGAVIVLYQPAIGVSLPHDLADWVALAGGFFFAVNNIMLRRLHGVADGARA 191 +L R+ALGL+GA IVLYQP +G+ LP L DW+A+A G FA+ N++LRRL G++D ARA Sbjct: 121 SLTRVALGLSGAFIVLYQPRLGLPLPQSLPDWMAVAAGLLFAITNVLLRRLQGLSDSARA 180 Query: 192 VAMLSGGALLSIILGAALAASGLIAWPGAIGALSVPTLALWSVLFMVSNLCLQYGVARLP 251 VAML+G LL+ +LG LA +G IAWP + A + P + +W++LF+VSNLCLQYGVARLP Sbjct: 181 VAMLAGSGLLAGVLGVMLALAGAIAWPLHVPATAWPLVGVWALLFLVSNLCLQYGVARLP 240 Query: 252 ANITAVVMLVEIIIASVSAWLFGAAELRVQDLIGGALIIATPWLVRD 298 A IT+V+ML EI++AS+SAW FGAAELR QDLIGG LIIA PWLVRD Sbjct: 241 ATITSVIMLAEILVASLSAWWFGAAELRPQDLIGGILIIAAPWLVRD 287 >emb|CAZ87491.1| putative Permease of the drug/metabolite transporter (DMT) superfamily [Thiomonas sp. 3As] Length = 312 Score = 208 bits (530), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 119/268 (44%), Positives = 172/268 (64%) Query: 19 AVGALLVNTTIWGLSWIAFKSLQQQGIHPLWATAIIFSCCTIWMLLLKRKSLREIGKHPE 78 A+G L++N +WG+SW F+ G++PLWATA +++ T+ ++ + ++R + +HP Sbjct: 11 AIGGLMLNAFVWGVSWWPFRHFNGLGLNPLWATAAMYAVSTLIIVAARPSAVRALWRHPP 70 Query: 79 LVYVAIASGLTNTAFNGAVAFGDVVRVVLLFYLMPIWAVILARLVLHEPITQRALLRIAL 138 L + IASG TN AFN V GDVVRVVLLFYLMP+WA +LAR +L+E +T+ LR+ L Sbjct: 71 LWGILIASGATNAAFNWGVTEGDVVRVVLLFYLMPVWATLLARWLLNEKLTRLVGLRLTL 130 Query: 139 GLTGAVIVLYQPAIGVSLPHDLADWVALAGGFFFAVNNIMLRRLHGVADGARAVAMLSGG 198 L GA++VL+ G+ LP ADW+ + GG FFA+NN++LR+ AR +AM +GG Sbjct: 131 ALAGAMVVLWPQGGGLPLPQHPADWLGVIGGMFFALNNVLLRKYAHTPPEARGLAMFAGG 190 Query: 199 ALLSIILGAALAASGLIAWPGAIGALSVPTLALWSVLFMVSNLCLQYGVARLPANITAVV 258 +++ + A L ASG +A A + + L ++ F+ +NL LQYG RLP+ +TAVV Sbjct: 191 VIVAGGVAALLTASGAVAPMPAPAPGWLMGVVLMALAFLAANLGLQYGAERLPSTLTAVV 250 Query: 259 MLVEIIIASVSAWLFGAAELRVQDLIGG 286 M VEI+ AS SA L G L Q L GG Sbjct: 251 MTVEIVFASGSAVLLGVERLSAQALWGG 278 >ref|YP_004152564.1| hypothetical protein Varpa_0231 [Variovorax paradoxus EPS] gb|ADU34453.1| protein of unknown function DUF6 transmembrane [Variovorax paradoxus EPS] Length = 296 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/302 (43%), Positives = 176/302 (58%), Gaps = 31/302 (10%) Query: 22 ALLVNTTIWGLSWIAFKSLQQQGIHPLWATAIIFSCCTIWMLLLKRKSLREIGKHPELVY 81 AL+ N +WGLSW F+ ++ G+HPLW T +I+ M +++R + + +P L Sbjct: 5 ALIFNAFVWGLSWFPFRHIESHGLHPLWTTCLIYLAIATVMGIVRRHAWKSFTAYPMLAV 64 Query: 82 VAIASGLTNTAFNGAVAFGDVVRVVLLFYLMPIWAVILARLVLHEPITQRALLRIALGLT 141 + +A+G TN FN AV GDVVRVVLLFYLMP+W+V+L L+L E T AL R+AL LT Sbjct: 65 LGLAAGFTNVGFNWAVTQGDVVRVVLLFYLMPLWSVLLGWLLLGERPTGGALARVALALT 124 Query: 142 GAVIVLYQPAIGVSLPHDLADWVALAGGFFFAVNNIMLRRLHGVADGARAVAMLSG---- 197 G V+VL P +P L DW+ LA GF FAV NI+LR L +RA+AM G Sbjct: 125 GVVVVLKAPGTDWPVPSSLPDWLGLAAGFSFAVTNIVLRHLRPAPGESRALAMFCGCTFV 184 Query: 198 ---GALLSIILGAALAASGLIAWPGAIGALSVPTLALWSVL----FMVSNLCLQYGVARL 250 AL+ LGA AS L A PG +G W+VL F++ N+CLQYG ARL Sbjct: 185 AGIAALVGTSLGA--IASPLQATPGWLG---------WAVLLGAGFVIGNVCLQYGAARL 233 Query: 251 PANITAVVMLVEIIIASVSAWLFGAAELRVQDLIGGALII---------ATPWLVRDRAA 301 A+ T+V+ML E++ ASVS+ GA+ + + L GGALI+ TP DRA+ Sbjct: 234 AASATSVIMLSEVLFASVSSVALGASTMDPRILTGGALIVLGAVWAAFARTPARGDDRAS 293 Query: 302 RS 303 S Sbjct: 294 AS 295 >ref|YP_003642332.1| protein of unknown function DUF6 transmembrane [Thiomonas intermedia K12] gb|ADG30002.1| protein of unknown function DUF6 transmembrane [Thiomonas intermedia K12] Length = 312 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 120/268 (44%), Positives = 171/268 (63%) Query: 19 AVGALLVNTTIWGLSWIAFKSLQQQGIHPLWATAIIFSCCTIWMLLLKRKSLREIGKHPE 78 A+G L++N +WG+SW F+ G++PLWATA +++ T+ ++ + +LR + +HP Sbjct: 11 AIGGLMLNAFVWGVSWWPFRHFNGLGLNPLWATAAMYAVSTLIIVAARPSALRALWRHPP 70 Query: 79 LVYVAIASGLTNTAFNGAVAFGDVVRVVLLFYLMPIWAVILARLVLHEPITQRALLRIAL 138 L + IASG TN AFN V GDVVRVVLLFYLMP+WA +LAR +L+E +T+ LR+ L Sbjct: 71 LWGILIASGATNAAFNWGVTEGDVVRVVLLFYLMPVWATLLARWLLNEKLTRLVGLRLTL 130 Query: 139 GLTGAVIVLYQPAIGVSLPHDLADWVALAGGFFFAVNNIMLRRLHGVADGARAVAMLSGG 198 L GA++VL+ G+ LP ADW+ + GG FFA+NN++LR+ AR +AM +GG Sbjct: 131 ALAGAMVVLWPQGGGLPLPQHPADWLGVIGGMFFALNNVLLRKYAHTPPEARGLAMFAGG 190 Query: 199 ALLSIILGAALAASGLIAWPGAIGALSVPTLALWSVLFMVSNLCLQYGVARLPANITAVV 258 +++ A L ASG +A A + + L ++ F+ +NL LQYG RLP+ +TAVV Sbjct: 191 VIVAGGAAALLTASGAVAPMPAPAPGWLMGVVLMALAFLAANLGLQYGAERLPSTLTAVV 250 Query: 259 MLVEIIIASVSAWLFGAAELRVQDLIGG 286 M VEI+ AS SA L G L Q L GG Sbjct: 251 MTVEIVFASGSAVLLGVERLSAQALWGG 278 >ref|YP_001022752.1| putative transmembrane protein [Methylibium petroleiphilum PM1] gb|ABM96517.1| putative transmembrane protein [Methylibium petroleiphilum PM1] Length = 304 Score = 196 bits (497), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 122/260 (46%), Positives = 168/260 (64%) Query: 15 IPPRAVGALLVNTTIWGLSWIAFKSLQQQGIHPLWATAIIFSCCTIWMLLLKRKSLREIG 74 +P AV AL++N +WG+SW F+ L G+HPLWATA+++ ++L ++ ++ Sbjct: 14 VPLLAVLALMLNAFVWGVSWWPFRQLHSFGLHPLWATALVYGLAVAVIVLRWPQAPGQLR 73 Query: 75 KHPELVYVAIASGLTNTAFNGAVAFGDVVRVVLLFYLMPIWAVILARLVLHEPITQRALL 134 + P L + +A+G TN AFN AV GDVVRVVLLFYLMP+W +LARL+L E +T+ AL Sbjct: 74 RTPVLWVLVLAAGTTNAAFNWAVTIGDVVRVVLLFYLMPLWTALLARLLLQERLTRWALF 133 Query: 135 RIALGLTGAVIVLYQPAIGVSLPHDLADWVALAGGFFFAVNNIMLRRLHGVADGARAVAM 194 R+ L L GA IVL G LP LAD + + GGF FA+NN+MLRR RA+AM Sbjct: 134 RVLLALAGAAIVLKPAGAGWPLPSSLADLLGIVGGFSFALNNVMLRRESRRPPEGRALAM 193 Query: 195 LSGGALLSIILGAALAASGLIAWPGAIGALSVPTLALWSVLFMVSNLCLQYGVARLPANI 254 GG L++ L +L+ + +AWP A + LA+ ++ F+ +NL LQYG ARL AN+ Sbjct: 194 FLGGVLVAGALALSLSTASSVAWPPAPQPFWLLPLAMLALAFLAANLALQYGAARLRANV 253 Query: 255 TAVVMLVEIIIASVSAWLFG 274 T+VVML EI+ ASVSA L G Sbjct: 254 TSVVMLTEIVFASVSAVLLG 273