BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0501.p (333 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777516.1| GGDEF domain-containing protein [Herbaspiril... 443 e-122 ref|YP_001354823.1| hypothetical protein mma_3133 [Janthinobacte... 345 6e-93 emb|CAL63012.2| Conserved hypothetical protein; putative GGDEF d... 339 3e-91 ref|ZP_08273661.1| hypothetical protein, Putative conserved doma... 335 8e-90 ref|YP_001101133.1| hypothetical protein HEAR2898 [Herminiimonas... 290 2e-76 >ref|YP_003777516.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ65608.1| GGDEF domain containing protein [Herbaspirillum seropedicae SmR1] Length = 372 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 224/344 (65%), Positives = 264/344 (76%), Gaps = 18/344 (5%) Query: 1 MNSAVDTQALMEENQQLHAELQDLLEQARINQQIMQRHQAFDLRLIGSSEFRDLIETVSL 60 M SA+D++AL+ +N+QL AELQDLL+QA INQ I++RHQAFDL+LIG+SEFR+LIE + Sbjct: 1 MRSAIDSEALIADNEQLRAELQDLLQQAHINQSIIERHQAFDLKLIGASEFRELIEVMLT 60 Query: 61 LMPNTFNLEIVTLSLVDYAFDVRRILHDLQIGLDEYPNLLFRAE------DGPALPLEKP 114 +MP F+LE VTLSL+D + ++RIL DLQIG++E+P LLF + D EKP Sbjct: 61 VMPGVFSLETVTLSLIDGDYAIQRILRDLQIGINEFPKLLFLKQALAFPDDDLTRADEKP 120 Query: 115 TLGPYQDDVHQSLFPTYRPASVAILPLTRHQTLIGYLALGSAHEGRFTGNLATDFIERLA 174 LGPY +H LFP Y P SVA+LPL R L+GYLALGSA+ RFT +LATDFIERLA Sbjct: 121 RLGPYVAALHGPLFPHYEPVSVAVLPLVRQHRLLGYLALGSAYGERFTRSLATDFIERLA 180 Query: 175 SVVAICLENVINNERLKHIGLTDPLTGVNNRRYIEQRMQEEIGRAQRDRSALSCLFIDID 234 ++ A+CLENVINNERLKHIGLTDPLTGVNNRRYIEQRMQEE+ R+QRDRSALSCLFIDID Sbjct: 181 TIAAVCLENVINNERLKHIGLTDPLTGVNNRRYIEQRMQEEVARSQRDRSALSCLFIDID 240 Query: 235 HFKRVNDKFGHQSGDDVLREVATRIKKELRLSDSLGRYGGEEFIVLLTQATLHDAERIAE 294 HFKRVND+FGHQSGDDVLREVA RIKKELRLSD+LGR+GGEEF+VLLT AT DA RIAE Sbjct: 241 HFKRVNDQFGHQSGDDVLREVAARIKKELRLSDALGRFGGEEFVVLLTHATREDAARIAE 300 Query: 295 RIRASVAX----------PTKRCKSPSPSA--PPHKHRPTAACR 326 RIRA V P K S +A PP + RP A + Sbjct: 301 RIRAGVCSRGVMIEGSRDPLKITASIGAAALTPPDRSRPAAEVK 344 >ref|YP_001354823.1| hypothetical protein mma_3133 [Janthinobacterium sp. Marseille] gb|ABR90587.1| Hypothetical protein mma_3133 [Janthinobacterium sp. Marseille] Length = 352 Score = 345 bits (885), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 175/291 (60%), Positives = 222/291 (76%), Gaps = 6/291 (2%) Query: 17 LHAELQDLLEQARINQQIMQRHQAFDLRLIGSSEFRDLIETVSLLMPNTFNLEIVTLSLV 76 + +L+ LLEQA NQQIMQR+Q FDL+ IG++ F++LI++V + L+++TLSL+ Sbjct: 1 MRTQLKLLLEQAHRNQQIMQRYQEFDLKFIGANSFQELIDSVFDTLTEASELDVITLSLI 60 Query: 77 DYAFDVRRILHDLQIGLDEYPNLLF-RAEDGP---ALPLEKPTLGPYQDDVHQSLFP--T 130 D A ++RRIL DL+I + +YPNLLF +DG A P KP LGPY H+ LFP Sbjct: 61 DPAAEIRRILSDLRIDISDYPNLLFVEDKDGVGEIAHPARKPALGPYNTMQHKRLFPDTV 120 Query: 131 YRPASVAILPLTRHQTLIGYLALGSAHEGRFTGNLATDFIERLASVVAICLENVINNERL 190 +PASVAILPL R TLIG+L+LGS RFT N+A+DF++ AS+VAIC+ENVINNERL Sbjct: 121 LKPASVAILPLIRRNTLIGWLSLGSLDPTRFTANMASDFLQHRASIVAICVENVINNERL 180 Query: 191 KHIGLTDPLTGVNNRRYIEQRMQEEIGRAQRDRSALSCLFIDIDHFKRVNDKFGHQSGDD 250 +HIGLTDPLTGVNNRRY+E+R+ EE+GR QR ALS ++ID+DHFK+VND FGHQ GD+ Sbjct: 181 QHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGYALSGMYIDLDHFKKVNDNFGHQGGDE 240 Query: 251 VLREVATRIKKELRLSDSLGRYGGEEFIVLLTQATLHDAERIAERIRASVA 301 VL EVA RIK ELRLSD+LGR+GGEEF+VLL A L A +AERIRASV+ Sbjct: 241 VLCEVANRIKAELRLSDALGRFGGEEFVVLLIDAPLDAALVVAERIRASVS 291 >emb|CAL63012.2| Conserved hypothetical protein; putative GGDEF domain [Herminiimonas arsenicoxydans] Length = 362 Score = 339 bits (870), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 169/293 (57%), Positives = 221/293 (75%), Gaps = 4/293 (1%) Query: 13 ENQQLHAELQDLLEQARINQQIMQRHQAFDLRLIGSSEFRDLIETVSLLMPNTFNLEIVT 72 EN QL ++L+ LLEQA NQQIMQR+Q FDL+ IG++ F++LI++V + L++VT Sbjct: 8 ENSQLRSQLKLLLEQAHRNQQIMQRYQEFDLKFIGANTFQELIDSVFDTLTEASELDVVT 67 Query: 73 LSLVDYAFDVRRILHDLQIGLDEYPNLLFRAE--DGPALPLEKPTLGPYQDDVHQSLFP- 129 LSL+D ++RRIL DL+I + +YPNL+F AE D A P K +LG Y H+ LFP Sbjct: 68 LSLIDPDAEIRRILTDLRIDVSDYPNLIFIAESIDEMAHPARKASLGIYNSMQHRRLFPD 127 Query: 130 -TYRPASVAILPLTRHQTLIGYLALGSAHEGRFTGNLATDFIERLASVVAICLENVINNE 188 +P+SVAILPL R LIG+L+LGS RFT +A+DF++ AS+VAIC+ENVINNE Sbjct: 128 TVLKPSSVAILPLIRRNALIGWLSLGSLDATRFTSGMASDFLQHRASIVAICVENVINNE 187 Query: 189 RLKHIGLTDPLTGVNNRRYIEQRMQEEIGRAQRDRSALSCLFIDIDHFKRVNDKFGHQSG 248 RL+HIGLTDPLTGVNNRRY+E+R+ EE+GR QR LS ++ID+D FK+VND +GHQ G Sbjct: 188 RLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGHTLSAMYIDLDFFKKVNDNYGHQGG 247 Query: 249 DDVLREVATRIKKELRLSDSLGRYGGEEFIVLLTQATLHDAERIAERIRASVA 301 D+VLREVA RIK ELRLSD+LGR+GGEEF+VLL A + A +AER+R+S+A Sbjct: 248 DEVLREVAARIKAELRLSDALGRFGGEEFVVLLIDAGMEAALAVAERMRSSIA 300 >ref|ZP_08273661.1| hypothetical protein, Putative conserved domain [Oxalobacteraceae bacterium IMCC9480] gb|EGF32864.1| hypothetical protein, Putative conserved domain [Oxalobacteraceae bacterium IMCC9480] Length = 364 Score = 335 bits (858), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 172/301 (57%), Positives = 217/301 (72%), Gaps = 6/301 (1%) Query: 7 TQALMEENQQLHAELQDLLEQARINQQIMQRHQAFDLRLIGSSEFRDLIETVSLLMPNTF 66 T L+ EN QL L LLEQA+ NQ+IM+RHQAFDL+ I ++ R+LIE++ + + Sbjct: 2 TNKLVTENIQLRDRLVLLLEQAQRNQKIMRRHQAFDLKFIAANSLRELIESIFDTLSESS 61 Query: 67 NLEIVTLSLVDYAFDVRRILHDLQIGLDEYPNLLF---RAEDGPALP-LEKPTLGPYQDD 122 L++VTL LVD +D+RRI+ DL + E+PNLLF AE G L + P LG + Sbjct: 62 QLDVVTLCLVDTEYDIRRIMVDLALDQAEFPNLLFIDREAELGLTLAQMTHPVLGHFSSA 121 Query: 123 VHQSLFP--TYRPASVAILPLTRHQTLIGYLALGSAHEGRFTGNLATDFIERLASVVAIC 180 H +FP PASVA++PL R LIG L+LGS HEGRF +A+DFIE L ++AIC Sbjct: 122 RHGVIFPKQVLTPASVAVVPLLRQGRLIGCLSLGSLHEGRFASGMASDFIEHLGCIIAIC 181 Query: 181 LENVINNERLKHIGLTDPLTGVNNRRYIEQRMQEEIGRAQRDRSALSCLFIDIDHFKRVN 240 LENVINNERLK IGLTD LTGVNNRRY+E+R+QEEIGR +R LSC++IDIDHFK++N Sbjct: 182 LENVINNERLKRIGLTDSLTGVNNRRYLERRLQEEIGRTRRQEFPLSCMYIDIDHFKKIN 241 Query: 241 DKFGHQSGDDVLREVATRIKKELRLSDSLGRYGGEEFIVLLTQATLHDAERIAERIRASV 300 D GHQ GD+VL++VA RIK ELRLSD+LGR+GGEEF+VLL A L A +AERIRAS+ Sbjct: 242 DSAGHQGGDEVLQQVALRIKAELRLSDALGRFGGEEFVVLLIDAGLSHALVVAERIRASI 301 Query: 301 A 301 A Sbjct: 302 A 302 >ref|YP_001101133.1| hypothetical protein HEAR2898 [Herminiimonas arsenicoxydans] Length = 314 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 144/252 (57%), Positives = 188/252 (74%), Gaps = 4/252 (1%) Query: 54 LIETVSLLMPNTFNLEIVTLSLVDYAFDVRRILHDLQIGLDEYPNLLFRAE--DGPALPL 111 +I++V + L++VTLSL+D ++RRIL DL+I + +YPNL+F AE D A P Sbjct: 1 MIDSVFDTLTEASELDVVTLSLIDPDAEIRRILTDLRIDVSDYPNLIFIAESIDEMAHPA 60 Query: 112 EKPTLGPYQDDVHQSLFP--TYRPASVAILPLTRHQTLIGYLALGSAHEGRFTGNLATDF 169 K +LG Y H+ LFP +P+SVAILPL R LIG+L+LGS RFT +A+DF Sbjct: 61 RKASLGIYNSMQHRRLFPDTVLKPSSVAILPLIRRNALIGWLSLGSLDATRFTSGMASDF 120 Query: 170 IERLASVVAICLENVINNERLKHIGLTDPLTGVNNRRYIEQRMQEEIGRAQRDRSALSCL 229 ++ AS+VAIC+ENVINNERL+HIGLTDPLTGVNNRRY+E+R+ EE+GR QR LS + Sbjct: 121 LQHRASIVAICVENVINNERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGHTLSAM 180 Query: 230 FIDIDHFKRVNDKFGHQSGDDVLREVATRIKKELRLSDSLGRYGGEEFIVLLTQATLHDA 289 +ID+D FK+VND +GHQ GD+VLREVA RIK ELRLSD+LGR+GGEEF+VLL A + A Sbjct: 181 YIDLDFFKKVNDNYGHQGGDEVLREVAARIKAELRLSDALGRFGGEEFVVLLIDAGMEAA 240 Query: 290 ERIAERIRASVA 301 +AER+R+S+A Sbjct: 241 LAVAERMRSSIA 252