BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0483.p         (441 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001354977.1| DNA modification methylase [Janthinobacteriu...   465   e-129
ref|YP_003777446.1| DNA-methyltransferase [Herbaspirillum serope...   464   e-128
ref|YP_001101298.1| putative DNA-methyltransferase [Herminiimona...   453   e-125
ref|YP_004751176.1| putative DNA-methyltransferase (DNA modifica...   452   e-125
ref|ZP_08276110.1| putative DNA-methyltransferase (DNA-modificat...   449   e-124

>ref|YP_001354977.1| DNA modification methylase [Janthinobacterium sp. Marseille]
 gb|ABR90086.1| DNA modification methylase [Janthinobacterium sp. Marseille]
          Length = 273

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 213/240 (88%), Positives = 228/240 (95%)

Query: 2   IWRDRVFCEDALDGLARIPDGEIDLLIADPPYGLGKDYGNDSDKLDNDAYLAWTEQWIDV 61
           +WRDR+FCEDAL GLARIPD  IDL+IADPPYGLGKDYGNDSDKLD DAYL+W EQWID 
Sbjct: 3   VWRDRIFCEDALAGLARIPDAAIDLIIADPPYGLGKDYGNDSDKLDADAYLSWMEQWIDA 62

Query: 62  ALPKLKPNGSLYIFLTWRYSPEIFVMLKRRMTMLNEIVWDRRVPSMGGSTRKYSSVHDTI 121
           ALPKLKPNGSLYIFLTWRYSPE+FVMLK+RMTMLNEIVWDRRVPSMGG TRK+SSVHDTI
Sbjct: 63  ALPKLKPNGSLYIFLTWRYSPEVFVMLKKRMTMLNEIVWDRRVPSMGGGTRKFSSVHDTI 122

Query: 122 GFFARAKDYYFDLDAIRIPYDAQTKKARSRSIFVGAKWLEMGYNPKDVWSVSRLHREHKE 181
           GFFA+AKDYYFDLDA+RIPYDA+TKKARSRSIFVGAKWLEMGYNPKDVWSVSRLH+EH+E
Sbjct: 123 GFFAKAKDYYFDLDAVRIPYDAETKKARSRSIFVGAKWLEMGYNPKDVWSVSRLHKEHRE 182

Query: 182 RADHPTQKPLEIVERMIKASCPPGGVVLDPFMGSGTTAVAARRCGRQFVGFELNPAYCAV 241
           RADHPTQKPLEIVERM+KASCPPGGVVLDPFMGSGTTA AA+RCGR FVGFELN  YC +
Sbjct: 183 RADHPTQKPLEIVERMLKASCPPGGVVLDPFMGSGTTAAAAKRCGRHFVGFELNAEYCEM 242


>ref|YP_003777446.1| DNA-methyltransferase [Herbaspirillum seropedicae SmR1]
 gb|ADJ65538.1| DNA-methyltransferase (DNA-modification methylase) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 276

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 217/242 (89%), Positives = 228/242 (94%), Gaps = 3/242 (1%)

Query: 3   WRDRVFCEDALD---GLARIPDGEIDLLIADPPYGLGKDYGNDSDKLDNDAYLAWTEQWI 59
           W DRVFCEDAL    GLARIPDG +DL+IADPPYGLGKDYGNDSDKLD  AYLAWTEQW+
Sbjct: 13  WLDRVFCEDALSAVGGLARIPDGSVDLMIADPPYGLGKDYGNDSDKLDTAAYLAWTEQWV 72

Query: 60  DVALPKLKPNGSLYIFLTWRYSPEIFVMLKRRMTMLNEIVWDRRVPSMGGSTRKYSSVHD 119
           D ALPKLKPNGSLYIFLTWR SPEIFVMLK+RMTM+NEI+WDRRVPSMGGSTR+YSSVHD
Sbjct: 73  DAALPKLKPNGSLYIFLTWRNSPEIFVMLKQRMTMINEIIWDRRVPSMGGSTRRYSSVHD 132

Query: 120 TIGFFARAKDYYFDLDAIRIPYDAQTKKARSRSIFVGAKWLEMGYNPKDVWSVSRLHREH 179
           TIGFFARAKDY+FDLDAIRIPYDAQTKKARSRSIFVGAKWLEMGYNPKDVWSVSRLHREH
Sbjct: 133 TIGFFARAKDYFFDLDAIRIPYDAQTKKARSRSIFVGAKWLEMGYNPKDVWSVSRLHREH 192

Query: 180 KERADHPTQKPLEIVERMIKASCPPGGVVLDPFMGSGTTAVAARRCGRQFVGFELNPAYC 239
           KERADHPTQKPLE+VERM+KASCPPGGVVLDPFMGSGTTAVAARRCGR F GFELNP YC
Sbjct: 193 KERADHPTQKPLEVVERMVKASCPPGGVVLDPFMGSGTTAVAARRCGRHFTGFELNPDYC 252

Query: 240 AV 241
            +
Sbjct: 253 EL 254


>ref|YP_001101298.1| putative DNA-methyltransferase [Herminiimonas arsenicoxydans]
 emb|CAL63177.1| Putative DNA methylase [Herminiimonas arsenicoxydans]
          Length = 269

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 207/239 (86%), Positives = 225/239 (94%)

Query: 3   WRDRVFCEDALDGLARIPDGEIDLLIADPPYGLGKDYGNDSDKLDNDAYLAWTEQWIDVA 62
           WR+RVFCEDAL GLARIPD  +DL+IADPPYGLGKDYGNDSDKL  +AYL W EQWID A
Sbjct: 4   WRNRVFCEDALAGLARIPDAAVDLIIADPPYGLGKDYGNDSDKLAAEAYLQWMEQWIDAA 63

Query: 63  LPKLKPNGSLYIFLTWRYSPEIFVMLKRRMTMLNEIVWDRRVPSMGGSTRKYSSVHDTIG 122
           LPKLKPNGSLYIFLTWRYSPE+FVMLK+RMTM+NEI+WDRRVPSMGGSTR++SSVHDT+G
Sbjct: 64  LPKLKPNGSLYIFLTWRYSPEVFVMLKKRMTMINEIIWDRRVPSMGGSTRRFSSVHDTVG 123

Query: 123 FFARAKDYYFDLDAIRIPYDAQTKKARSRSIFVGAKWLEMGYNPKDVWSVSRLHREHKER 182
           FFA AKDYYFDLDAIR+PYDA TKKARSRSIFVGAKWLE+GYNPKDVWSVSRLHREH+ER
Sbjct: 124 FFAGAKDYYFDLDAIRVPYDAVTKKARSRSIFVGAKWLELGYNPKDVWSVSRLHREHRER 183

Query: 183 ADHPTQKPLEIVERMIKASCPPGGVVLDPFMGSGTTAVAARRCGRQFVGFELNPAYCAV 241
           ADHPTQKPLEI+ERM+KASCPP GVVLDPFMGSGTTAVAA+RCGR FVGFELN  YCA+
Sbjct: 184 ADHPTQKPLEIIERMLKASCPPDGVVLDPFMGSGTTAVAAKRCGRHFVGFELNAEYCAL 242


>ref|YP_004751176.1| putative DNA-methyltransferase (DNA modification methylase)
           [Collimonas fungivorans Ter331]
 gb|AEK60353.1| putative DNA-methyltransferase (DNA modification methylase)
           [Collimonas fungivorans Ter331]
          Length = 269

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/239 (88%), Positives = 225/239 (94%)

Query: 3   WRDRVFCEDALDGLARIPDGEIDLLIADPPYGLGKDYGNDSDKLDNDAYLAWTEQWIDVA 62
           W DRVF EDAL GL RIPDG +DLL+ADPPYGLGKDYGNDSDKLD  AYL WTE+WID A
Sbjct: 8   WIDRVFGEDALQGLQRIPDGSVDLLLADPPYGLGKDYGNDSDKLDTAAYLRWTEEWIDAA 67

Query: 63  LPKLKPNGSLYIFLTWRYSPEIFVMLKRRMTMLNEIVWDRRVPSMGGSTRKYSSVHDTIG 122
           LPKLKPNGSLYIFLTWR+SPEIFVMLK+RM M NEI+WDRRVPSMGG TR++SSVHDTIG
Sbjct: 68  LPKLKPNGSLYIFLTWRFSPEIFVMLKQRMIMNNEIIWDRRVPSMGGGTRRFSSVHDTIG 127

Query: 123 FFARAKDYYFDLDAIRIPYDAQTKKARSRSIFVGAKWLEMGYNPKDVWSVSRLHREHKER 182
           FFA AKDYYFDLDAIRIPYDA+TKKARSRSIFVGAKWLE+GYNPKDVWSVSRLHREH+ER
Sbjct: 128 FFACAKDYYFDLDAIRIPYDAETKKARSRSIFVGAKWLELGYNPKDVWSVSRLHREHRER 187

Query: 183 ADHPTQKPLEIVERMIKASCPPGGVVLDPFMGSGTTAVAARRCGRQFVGFELNPAYCAV 241
           ADHPTQKPLEIVERMIKASCPPGG+VLDPFMGSGTTAVAARRCGR+FVGFELNP YCA+
Sbjct: 188 ADHPTQKPLEIVERMIKASCPPGGIVLDPFMGSGTTAVAARRCGRRFVGFELNPEYCAL 246


>ref|ZP_08276110.1| putative DNA-methyltransferase (DNA-modification methylase)
           [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF30424.1| putative DNA-methyltransferase (DNA-modification methylase)
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 258

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 207/239 (86%), Positives = 225/239 (94%)

Query: 3   WRDRVFCEDALDGLARIPDGEIDLLIADPPYGLGKDYGNDSDKLDNDAYLAWTEQWIDVA 62
           W+++VFCEDAL GLARIPDG IDL++ADPPYGLGKDYGNDSDKL    YLAW E+WID A
Sbjct: 4   WQNQVFCEDALAGLARIPDGVIDLILADPPYGLGKDYGNDSDKLATAEYLAWMERWIDAA 63

Query: 63  LPKLKPNGSLYIFLTWRYSPEIFVMLKRRMTMLNEIVWDRRVPSMGGSTRKYSSVHDTIG 122
           LPKLKPNGSLYIFLTWRYSPEIFV+LK+RMTM+NEIVWDRRVPSMGG+ RKYSSVHDTIG
Sbjct: 64  LPKLKPNGSLYIFLTWRYSPEIFVLLKQRMTMVNEIVWDRRVPSMGGTVRKYSSVHDTIG 123

Query: 123 FFARAKDYYFDLDAIRIPYDAQTKKARSRSIFVGAKWLEMGYNPKDVWSVSRLHREHKER 182
           FFA +KDYYFDLDAIRIPYDA TKKARSRSIFVGAKWLE+GYNPKDVWSVSRLHREH+ER
Sbjct: 124 FFANSKDYYFDLDAIRIPYDAVTKKARSRSIFVGAKWLELGYNPKDVWSVSRLHREHRER 183

Query: 183 ADHPTQKPLEIVERMIKASCPPGGVVLDPFMGSGTTAVAARRCGRQFVGFELNPAYCAV 241
           ADHPTQKPLEI+ERM+KASCPPGG+VLDPFMGSGTTAVAA+R GRQFVGFELN  YCA+
Sbjct: 184 ADHPTQKPLEIIERMVKASCPPGGIVLDPFMGSGTTAVAAKRAGRQFVGFELNADYCAM 242