BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0466.p         (176 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777427.1| transmembrane ubiquinol-cytochrome C reducta...   339   9e-92
ref|YP_001354961.1| ubiquinol-cytochrome c reductase iron-sulfur...   322   1e-86
ref|YP_001101282.1| ubiquinol-cytochrome c reductase iron-sulfur...   298   2e-79
ref|ZP_08273730.1| Ubiquinol-cytochrome C reductase iron-sulfur ...   288   2e-76
ref|XP_002944062.1| PREDICTED: ubiquinol-cytochrome c reductase ...   271   3e-71

>ref|YP_003777427.1| transmembrane ubiquinol-cytochrome C reductase [Herbaspirillum
           seropedicae SmR1]
 emb|CAM32682.1| Transmembrane ubiquinol-cytochrome C reductase (Iron-sulfur
           subunit) oxidoreductase protein [Herbaspirillum
           seropedicae]
 gb|ADJ65519.1| transmembrane ubiquinol-cytochrome C reductase (Iron-sulfur
           subunit) oxidoreductase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 202

 Score =  339 bits (870), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 157/176 (89%), Positives = 169/176 (96%)

Query: 1   LATAGAFVSTFQPSERAKAAGAPVEVDISTLVPGEMRTVEWRGKPVWILKRTPEMLETLK 60
           LATAGAFVST QPSERAKAAGAPVEVDIS+L PGEMRTVEWRGKPVWILKRTPEM+++LK
Sbjct: 27  LATAGAFVSTLQPSERAKAAGAPVEVDISSLAPGEMRTVEWRGKPVWILKRTPEMVDSLK 86

Query: 61  KVDAQVADPESKRTEFSTTPEYALNEWRSIKKDVLVVVGICPHLGCSPSSKFQTGAQPSL 120
           K D +VADP SKRT+FS TP+YALNEWRSI+KD+LVVVGICPHLGCSPSS+FQTGAQPSL
Sbjct: 87  KTDGEVADPNSKRTDFSETPDYALNEWRSIRKDILVVVGICPHLGCSPSSRFQTGAQPSL 146

Query: 121 PDDWQGGFLCPCHGSTFDLAGRVYKNKPSPDNLQVPRYMFEGDTKLVIGKDEKGEA 176
           PD+WQGGFLCPCHGSTFDLAGRVYKNKP+PDNLQVPRYMFEGD KLVIGKDEKGEA
Sbjct: 147 PDNWQGGFLCPCHGSTFDLAGRVYKNKPAPDNLQVPRYMFEGDNKLVIGKDEKGEA 202


>ref|YP_001354961.1| ubiquinol-cytochrome c reductase iron-sulfur subunit
           [Janthinobacterium sp. Marseille]
 gb|ABR89245.1| ubiquinol-cytochrome c reductase iron-sulfur subunit
           [Janthinobacterium sp. Marseille]
          Length = 202

 Score =  322 bits (826), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 151/176 (85%), Positives = 161/176 (91%)

Query: 1   LATAGAFVSTFQPSERAKAAGAPVEVDISTLVPGEMRTVEWRGKPVWILKRTPEMLETLK 60
           LAT G  VSTFQPSERAKAAGAPVEVDIS+L PGEM+TVEWRG PVWILKRTPE +  L 
Sbjct: 27  LATTGVLVSTFQPSERAKAAGAPVEVDISSLAPGEMKTVEWRGNPVWILKRTPEQVAALG 86

Query: 61  KVDAQVADPESKRTEFSTTPEYALNEWRSIKKDVLVVVGICPHLGCSPSSKFQTGAQPSL 120
           K D ++ADPES RT+FSTTPEYALNEWRS +KD+LVVVGICPHLGCSP++KFQTGAQPSL
Sbjct: 87  KTDNELADPESARTQFSTTPEYALNEWRSRQKDLLVVVGICPHLGCSPTAKFQTGAQPSL 146

Query: 121 PDDWQGGFLCPCHGSTFDLAGRVYKNKPSPDNLQVPRYMFEGDTKLVIGKDEKGEA 176
           PDDW GGFLCPCHGSTFDLAGRVYKNKPSPDNLQVP YMFEGDTKLVIGKDEKGEA
Sbjct: 147 PDDWHGGFLCPCHGSTFDLAGRVYKNKPSPDNLQVPPYMFEGDTKLVIGKDEKGEA 202


>ref|YP_001101282.1| ubiquinol-cytochrome c reductase iron-sulfur subunit (Rieske
           iron-sulfur protein) (RISP) (partial) [Herminiimonas
           arsenicoxydans]
 emb|CAL63161.1| Ubiquinol-cytochrome c reductase iron-sulfur subunit (Rieske
           iron-sulfur protein) (RISP) [Herminiimonas
           arsenicoxydans]
          Length = 202

 Score =  298 bits (764), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 139/176 (78%), Positives = 156/176 (88%)

Query: 1   LATAGAFVSTFQPSERAKAAGAPVEVDISTLVPGEMRTVEWRGKPVWILKRTPEMLETLK 60
           LAT G  VSTFQPSERAKAAGAPVEVDI+ LVPGEM+TVEWRGKPVWILKR+PEM+ TLK
Sbjct: 27  LATTGVLVSTFQPSERAKAAGAPVEVDIAGLVPGEMKTVEWRGKPVWILKRSPEMIATLK 86

Query: 61  KVDAQVADPESKRTEFSTTPEYALNEWRSIKKDVLVVVGICPHLGCSPSSKFQTGAQPSL 120
           + DA+VADP S+R     TPEYA NE+RSIK ++LV VGIC HLGCSP ++FQTGAQPSL
Sbjct: 87  QTDAEVADPNSERKPDELTPEYARNEYRSIKPEILVAVGICTHLGCSPVTRFQTGAQPSL 146

Query: 121 PDDWQGGFLCPCHGSTFDLAGRVYKNKPSPDNLQVPRYMFEGDTKLVIGKDEKGEA 176
           PDDW GGFLCPCHGSTFDLAGRV+KNKP+PDNL+VPR+MF  D+KLVIGKDEKGEA
Sbjct: 147 PDDWHGGFLCPCHGSTFDLAGRVFKNKPAPDNLEVPRHMFLSDSKLVIGKDEKGEA 202


>ref|ZP_08273730.1| Ubiquinol-cytochrome C reductase iron-sulfur subunit
           [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF32808.1| Ubiquinol-cytochrome C reductase iron-sulfur subunit
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 204

 Score =  288 bits (737), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 138/178 (77%), Positives = 154/178 (86%), Gaps = 2/178 (1%)

Query: 1   LATAGAFVSTFQPSERAKAAGAPVEVDISTLVPGEMRTVEWRGKPVWILKRTPEMLETLK 60
           LATAGA VSTF PSERAKAAGA VEVDIS LVPGEM+TVEWRGKPVWILKRTP+M+ +LK
Sbjct: 27  LATAGALVSTFAPSERAKAAGASVEVDISGLVPGEMKTVEWRGKPVWILKRTPDMMASLK 86

Query: 61  --KVDAQVADPESKRTEFSTTPEYALNEWRSIKKDVLVVVGICPHLGCSPSSKFQTGAQP 118
             K D ++ADP S+R +   TPEYA NE+RSIK  +LV VGIC HLGCSP +KFQ G QP
Sbjct: 87  DTKNDNELADPHSERNKDELTPEYARNEFRSIKPTILVAVGICSHLGCSPGTKFQPGPQP 146

Query: 119 SLPDDWQGGFLCPCHGSTFDLAGRVYKNKPSPDNLQVPRYMFEGDTKLVIGKDEKGEA 176
           SLP+DW+GGFLCPCHGSTFDLAGRVYKNKP+PDNLQVPR+MF GD K+VIGKDEKGEA
Sbjct: 147 SLPNDWEGGFLCPCHGSTFDLAGRVYKNKPAPDNLQVPRHMFVGDGKIVIGKDEKGEA 204


>ref|XP_002944062.1| PREDICTED: ubiquinol-cytochrome c reductase iron-sulfur
           subunit-like [Xenopus (Silurana) tropicalis]
          Length = 199

 Score =  271 bits (692), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 126/168 (75%), Positives = 144/168 (85%)

Query: 7   FVSTFQPSERAKAAGAPVEVDISTLVPGEMRTVEWRGKPVWILKRTPEMLETLKKVDAQV 66
           FVSTFQPSERAKAAGA VEVDIS+L PGE  TVEWRGKPVWI++RTPE L  L ++D Q+
Sbjct: 32  FVSTFQPSERAKAAGAAVEVDISSLKPGEKITVEWRGKPVWIVRRTPEQLAELSQLDGQL 91

Query: 67  ADPESKRTEFSTTPEYALNEWRSIKKDVLVVVGICPHLGCSPSSKFQTGAQPSLPDDWQG 126
           ADP SKR     TPEYA NEWRSIK +VLV VGICPHLGCSPS KF  GAQPSLPDDW+G
Sbjct: 92  ADPASKRNPAELTPEYARNEWRSIKPEVLVAVGICPHLGCSPSDKFAPGAQPSLPDDWKG 151

Query: 127 GFLCPCHGSTFDLAGRVYKNKPSPDNLQVPRYMFEGDTKLVIGKDEKG 174
           GFLCPCHGSTFD+AGRV+KNKP+PDNL+VPR+M+  +TKL+IG+D+K 
Sbjct: 152 GFLCPCHGSTFDMAGRVFKNKPAPDNLEVPRHMYLSETKLLIGEDKKA 199