BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0465.p (468 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777426.1| cytochrome b subunit transmembrane protein [... 862 0.0 ref|YP_004751319.1| Ubiquinol--cytochrome c reductase, cytochrom... 842 0.0 ref|YP_001354960.1| cytochrome b [Janthinobacterium sp. Marseill... 838 0.0 ref|YP_001101281.1| cytochrome b [Herminiimonas arsenicoxydans] ... 820 0.0 ref|ZP_08273729.1| Ubiquinol-cytochrome c reductase, cytochrome ... 762 0.0 >ref|YP_003777426.1| cytochrome b subunit transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65518.1| cytochrome b subunit transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 468 Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/468 (89%), Positives = 444/468 (94%) Query: 1 MAAFQEKQLPKDAPVSAKALNWVDARFPLTSTWKAHLSEYYAPKNFNFWYAFGSLALLVL 60 M AF EK+LP DAPVSAKALNWVD+RFPLT+TWKAHLSEYYAPKNFNFWY FGSLALLVL Sbjct: 1 MGAFHEKKLPDDAPVSAKALNWVDSRFPLTATWKAHLSEYYAPKNFNFWYIFGSLALLVL 60 Query: 61 VIQIVTGIFLVMHYKPDATLAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMVRG 120 VIQIVTGIFLVMHYKPDATLAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMVRG Sbjct: 61 VIQIVTGIFLVMHYKPDATLAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMVRG 120 Query: 121 LLYGSYRKPRELVWLFGVAIFLCLMGEAFMGYLLPWGQMSYWGAQVIVNLFGAIPFIGPD 180 LLYGSYRKPRELVWLFGV IFLCLMGEAF GYLLPWGQMSYWGAQVIVNLFGAIPFIGPD Sbjct: 121 LLYGSYRKPRELVWLFGVGIFLCLMGEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPD 180 Query: 181 LSLWIRGDYVVSDATLNRFFSFHVIAIPLVLIGLVVAHIIALHEVGSNNPDGVEIKEKLD 240 LSLWIRGDYVVSDATLNRFFSFHVIAIPLVLIGLVVAHIIALHEVGSNNPDGVEIKEK D Sbjct: 181 LSLWIRGDYVVSDATLNRFFSFHVIAIPLVLIGLVVAHIIALHEVGSNNPDGVEIKEKTD 240 Query: 241 ANGIPLDGVPFHPYYSVHDIMAVAVFLIVFTAVVFFAPEMGGYFLEYNNFVPADSLKTPP 300 G+PLDGVPFHPYY+VHDI V++FL+VF+AVVFFAPEMGGYFLEYNNF+PADSLKTPP Sbjct: 241 EKGVPLDGVPFHPYYTVHDIFGVSIFLMVFSAVVFFAPEMGGYFLEYNNFIPADSLKTPP 300 Query: 301 HIAPVWYFTPFYSILRATTSDFMAYLMAGVAAYVALLVFRSQRSSIFKIAAIVIGVAVIA 360 HIAPVWYFTPFYSILRATT+DFM +L+AGVAAYVALLVF+S+ SS KIAAIVIG+A+I Sbjct: 301 HIAPVWYFTPFYSILRATTADFMGWLIAGVAAYVALLVFKSRLSSKLKIAAIVIGLAIIG 360 Query: 361 GMAIFDAKFWGVVLMGVSVMILGGLPWLDHSQVKSIRYRPSWHKYVYLVFGVAFVALGYL 420 GM IFDAKFWGVVLMG+SV+ILGGLPWLD SQVKSIRYRPSWHKYVYLVFG+AFV LGYL Sbjct: 361 GMLIFDAKFWGVVLMGLSVVILGGLPWLDKSQVKSIRYRPSWHKYVYLVFGIAFVILGYL 420 Query: 421 GVQPPTAVGTTIAQIGTFIYFGFFLLMPWWSALGRFKPVPDRVTYHPH 468 GVQPPTA+GTT++Q+ +FIY GFFLLMPWWSA G FKPVPDRV YHPH Sbjct: 421 GVQPPTAIGTTVSQVCSFIYLGFFLLMPWWSAAGTFKPVPDRVVYHPH 468 >ref|YP_004751319.1| Ubiquinol--cytochrome c reductase, cytochrome B subunit [Collimonas fungivorans Ter331] gb|AEK60496.1| Ubiquinol--cytochrome c reductase, cytochrome B subunit [Collimonas fungivorans Ter331] Length = 467 Score = 842 bits (2176), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/466 (87%), Positives = 437/466 (93%) Query: 3 AFQEKQLPKDAPVSAKALNWVDARFPLTSTWKAHLSEYYAPKNFNFWYAFGSLALLVLVI 62 AF EKQLP DAP++ KALNW+DARFP+TSTWKAHLSEYYAPKNFNFWYAFGSLALLVLVI Sbjct: 2 AFHEKQLPADAPIADKALNWIDARFPVTSTWKAHLSEYYAPKNFNFWYAFGSLALLVLVI 61 Query: 63 QIVTGIFLVMHYKPDATLAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMVRGLL 122 QIVTGIFLVMHYKPDA LAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMVRGLL Sbjct: 62 QIVTGIFLVMHYKPDAALAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMVRGLL 121 Query: 123 YGSYRKPRELVWLFGVAIFLCLMGEAFMGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS 182 YGSYRKPRELVWLFGV IFLCLMGEAFMGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS Sbjct: 122 YGSYRKPRELVWLFGVGIFLCLMGEAFMGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS 181 Query: 183 LWIRGDYVVSDATLNRFFSFHVIAIPLVLIGLVVAHIIALHEVGSNNPDGVEIKEKLDAN 242 LWIRGDYVVSDATLNRFFSFHVIAIPLVLIGLVVAHIIALHEVGSNNPDGVEIKEKLDA Sbjct: 182 LWIRGDYVVSDATLNRFFSFHVIAIPLVLIGLVVAHIIALHEVGSNNPDGVEIKEKLDAK 241 Query: 243 GIPLDGVPFHPYYSVHDIMAVAVFLIVFTAVVFFAPEMGGYFLEYNNFVPADSLKTPPHI 302 G+PLDGVPFHPYYSVHD+MAVAVFLIVF+AVVFF PEMGGYFLEYNNFVPADSLKTPPHI Sbjct: 242 GVPLDGVPFHPYYSVHDVMAVAVFLIVFSAVVFFGPEMGGYFLEYNNFVPADSLKTPPHI 301 Query: 303 APVWYFTPFYSILRATTSDFMAYLMAGVAAYVALLVFRSQRSSIFKIAAIVIGVAVIAGM 362 APVWYFTP+YSILRA TSDF+ YL GVAA+VALL +S +S+ KIAA+VIG+A+I M Sbjct: 302 APVWYFTPYYSILRAVTSDFIVYLQVGVAAFVALLWLKSSLNSMLKIAALVIGLAIIGAM 361 Query: 363 AIFDAKFWGVVLMGVSVMILGGLPWLDHSQVKSIRYRPSWHKYVYLVFGVAFVALGYLGV 422 +FDAKF+GVVLMGVSV+IL GLPWLDHS+VKSIRYRPSWHKY+Y++F + FV LGYLGV Sbjct: 362 FVFDAKFFGVVLMGVSVVILAGLPWLDHSKVKSIRYRPSWHKYIYILFAITFVVLGYLGV 421 Query: 423 QPPTAVGTTIAQIGTFIYFGFFLLMPWWSALGRFKPVPDRVTYHPH 468 QPP+A+G ++++ TFIYFGFFLLMPWWSA G FKPVPDRV YHPH Sbjct: 422 QPPSAIGGLVSKVCTFIYFGFFLLMPWWSAAGTFKPVPDRVVYHPH 467 >ref|YP_001354960.1| cytochrome b [Janthinobacterium sp. Marseille] gb|ABR88802.1| cytochrome b [Janthinobacterium sp. Marseille] Length = 467 Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/466 (87%), Positives = 436/466 (93%) Query: 3 AFQEKQLPKDAPVSAKALNWVDARFPLTSTWKAHLSEYYAPKNFNFWYAFGSLALLVLVI 62 AF EKQLP DAP++ KALNWVDARFPL+STWKAHLSEYYAPKNFNF Y FGSLALLVLVI Sbjct: 2 AFHEKQLPADAPIADKALNWVDARFPLSSTWKAHLSEYYAPKNFNFLYVFGSLALLVLVI 61 Query: 63 QIVTGIFLVMHYKPDATLAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMVRGLL 122 QIVTGIFLVMHYKPDA LAFASVEYIMRDVPWGWLVRYMHSTGASAFF+VVY+HM+RGLL Sbjct: 62 QIVTGIFLVMHYKPDANLAFASVEYIMRDVPWGWLVRYMHSTGASAFFVVVYIHMLRGLL 121 Query: 123 YGSYRKPRELVWLFGVAIFLCLMGEAFMGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS 182 YGSYRKPRELVWLFGVAIFLCLM EAF GYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS Sbjct: 122 YGSYRKPRELVWLFGVAIFLCLMAEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS 181 Query: 183 LWIRGDYVVSDATLNRFFSFHVIAIPLVLIGLVVAHIIALHEVGSNNPDGVEIKEKLDAN 242 LWIRGDYVVSDATLNRFF+FHVIAIPLVLIGLVVAHI+ALHEVGS+NPDGVEIKEK+D Sbjct: 182 LWIRGDYVVSDATLNRFFAFHVIAIPLVLIGLVVAHIVALHEVGSSNPDGVEIKEKVDEK 241 Query: 243 GIPLDGVPFHPYYSVHDIMAVAVFLIVFTAVVFFAPEMGGYFLEYNNFVPADSLKTPPHI 302 G+PLDG+PFHPYYSVHDI V +FL VFTAVVFFAPEMGGYFLEYNNF+PAD LKTPPHI Sbjct: 242 GVPLDGIPFHPYYSVHDIFIVTIFLFVFTAVVFFAPEMGGYFLEYNNFIPADPLKTPPHI 301 Query: 303 APVWYFTPFYSILRATTSDFMAYLMAGVAAYVALLVFRSQRSSIFKIAAIVIGVAVIAGM 362 APVWYFTPFYSILRATTSDFM +L AGVAAYVAL++ +++ +S FKIAA VIG+A IAGM Sbjct: 302 APVWYFTPFYSILRATTSDFMIWLAAGVAAYVALIILKTRLASKFKIAAAVIGLAAIAGM 361 Query: 363 AIFDAKFWGVVLMGVSVMILGGLPWLDHSQVKSIRYRPSWHKYVYLVFGVAFVALGYLGV 422 IFDAKFWGVVLMGVSVMI+ GLPWLD S VKSIRYRPSWHKYVY+VFG+AFV LGYLGV Sbjct: 362 FIFDAKFWGVVLMGVSVMIMFGLPWLDVSPVKSIRYRPSWHKYVYIVFGIAFVVLGYLGV 421 Query: 423 QPPTAVGTTIAQIGTFIYFGFFLLMPWWSALGRFKPVPDRVTYHPH 468 QPPTA+GT IAQ+GTF+YFGFFLLMPWWSA+G FKPVPDRV +HPH Sbjct: 422 QPPTAIGTAIAQVGTFVYFGFFLLMPWWSAMGTFKPVPDRVVFHPH 467 >ref|YP_001101281.1| cytochrome b [Herminiimonas arsenicoxydans] emb|CAL63160.1| Cytochrome b [Herminiimonas arsenicoxydans] Length = 467 Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/466 (85%), Positives = 428/466 (91%) Query: 3 AFQEKQLPKDAPVSAKALNWVDARFPLTSTWKAHLSEYYAPKNFNFWYAFGSLALLVLVI 62 AF EKQLP DAP++ KALNWVDARFPL++TWKAHLSEYYAPKNFNF Y FGSLALLVLVI Sbjct: 2 AFHEKQLPADAPIADKALNWVDARFPLSATWKAHLSEYYAPKNFNFLYVFGSLALLVLVI 61 Query: 63 QIVTGIFLVMHYKPDATLAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMVRGLL 122 QIVTGIFLVMHYKPDA LAFASVEYIMRDVPWGWLVRYMHSTGASAFF+VVY+HM+RGLL Sbjct: 62 QIVTGIFLVMHYKPDAALAFASVEYIMRDVPWGWLVRYMHSTGASAFFVVVYIHMLRGLL 121 Query: 123 YGSYRKPRELVWLFGVAIFLCLMGEAFMGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS 182 YGSYRKPRELVWLFGV IFLCLM EAF GYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS Sbjct: 122 YGSYRKPRELVWLFGVGIFLCLMAEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS 181 Query: 183 LWIRGDYVVSDATLNRFFSFHVIAIPLVLIGLVVAHIIALHEVGSNNPDGVEIKEKLDAN 242 LWIRGDYVVSDATLNRFF+FHVIAIPLVLIGLVVAHI+ALHEVGS+NPDGVEIKEKLDA Sbjct: 182 LWIRGDYVVSDATLNRFFAFHVIAIPLVLIGLVVAHIVALHEVGSSNPDGVEIKEKLDAK 241 Query: 243 GIPLDGVPFHPYYSVHDIMAVAVFLIVFTAVVFFAPEMGGYFLEYNNFVPADSLKTPPHI 302 GIPLDG+PFHPYYSVHDI V +FL VFTAVVFFAPEMGGYFLEYNNFVPAD LKTPPHI Sbjct: 242 GIPLDGIPFHPYYSVHDIFIVTIFLFVFTAVVFFAPEMGGYFLEYNNFVPADPLKTPPHI 301 Query: 303 APVWYFTPFYSILRATTSDFMAYLMAGVAAYVALLVFRSQRSSIFKIAAIVIGVAVIAGM 362 APVWYFTPFYSILRA TSDFM +L AGVAAYVAL++ +++ +S FK+AA VIG+ VI M Sbjct: 302 APVWYFTPFYSILRAVTSDFMVWLAAGVAAYVALIILKTRLASKFKVAAAVIGLLVIVTM 361 Query: 363 AIFDAKFWGVVLMGVSVMILGGLPWLDHSQVKSIRYRPSWHKYVYLVFGVAFVALGYLGV 422 + DAKFWGVVLMGVSVMI+ GLPWLD S VKSIRYRP WHKYVY+VFG+ FV LGYLGV Sbjct: 362 FVTDAKFWGVVLMGVSVMIMFGLPWLDVSPVKSIRYRPDWHKYVYIVFGIMFVVLGYLGV 421 Query: 423 QPPTAVGTTIAQIGTFIYFGFFLLMPWWSALGRFKPVPDRVTYHPH 468 Q PT +GT ++QIGTFIYFGFFLLMPWWSA+G FKPVPDRV +HPH Sbjct: 422 QAPTPIGTAVSQIGTFIYFGFFLLMPWWSAMGTFKPVPDRVVFHPH 467 >ref|ZP_08273729.1| Ubiquinol-cytochrome c reductase, cytochrome B subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF32807.1| Ubiquinol-cytochrome c reductase, cytochrome B subunit [Oxalobacteraceae bacterium IMCC9480] Length = 467 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/466 (77%), Positives = 413/466 (88%) Query: 3 AFQEKQLPKDAPVSAKALNWVDARFPLTSTWKAHLSEYYAPKNFNFWYAFGSLALLVLVI 62 AF EK+LP +AP++ KALNWVD+RFPLT W +YYAPKNFN++Y FGSLA+LVLV+ Sbjct: 2 AFHEKKLPANAPMADKALNWVDSRFPLTKLWNDQWGQYYAPKNFNWFYIFGSLAMLVLVM 61 Query: 63 QIVTGIFLVMHYKPDATLAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMVRGLL 122 QIVTGIFLVMHYKPDA LAFASVEYIMRDVPWGWLVRYMHSTGASAFFI++YLHM R LL Sbjct: 62 QIVTGIFLVMHYKPDANLAFASVEYIMRDVPWGWLVRYMHSTGASAFFIIIYLHMTRALL 121 Query: 123 YGSYRKPRELVWLFGVAIFLCLMGEAFMGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS 182 YGSYRKPREL+WLFGVAIFLCLMGEAF GYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS Sbjct: 122 YGSYRKPRELIWLFGVAIFLCLMGEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS 181 Query: 183 LWIRGDYVVSDATLNRFFSFHVIAIPLVLIGLVVAHIIALHEVGSNNPDGVEIKEKLDAN 242 LWIRGDYVVSDATLNRFF+FHVIAIPLVL+GLVV+H+IALHEVGSNNPDG+E+K+ L + Sbjct: 182 LWIRGDYVVSDATLNRFFAFHVIAIPLVLLGLVVSHLIALHEVGSNNPDGIEVKDTLGPD 241 Query: 243 GIPLDGVPFHPYYSVHDIMAVAVFLIVFTAVVFFAPEMGGYFLEYNNFVPADSLKTPPHI 302 G PLD +P HPYYSVHD+ V +FL +F+AV+FFAPEMGGYFLEYNNF+PADSLKTPPHI Sbjct: 242 GHPLDAIPSHPYYSVHDLFGVTIFLTIFSAVIFFAPEMGGYFLEYNNFLPADSLKTPPHI 301 Query: 303 APVWYFTPFYSILRATTSDFMAYLMAGVAAYVALLVFRSQRSSIFKIAAIVIGVAVIAGM 362 APVWYFTPFYS+LRATTS F+ +M VA YVALL+ +S+ + + K A+ VIG+ IA M Sbjct: 302 APVWYFTPFYSVLRATTSQFLYAMMVAVAGYVALLILKSRLTGLAKAASAVIGLVAIAAM 361 Query: 363 AIFDAKFWGVVLMGVSVMILGGLPWLDHSQVKSIRYRPSWHKYVYLVFGVAFVALGYLGV 422 + DAKF+GVVLMG SV+IL G+PWLDHS+V+SIRYRP+WHKYVY++FG++F+ LGYLGV Sbjct: 362 FVLDAKFFGVVLMGASVLILAGMPWLDHSEVRSIRYRPTWHKYVYILFGISFLILGYLGV 421 Query: 423 QPPTAVGTTIAQIGTFIYFGFFLLMPWWSALGRFKPVPDRVTYHPH 468 PPT T ++QI TFIYFGFFLLMPWWSA G+FKPVP RVT+HPH Sbjct: 422 LPPTDGRTLVSQICTFIYFGFFLLMPWWSAAGKFKPVPKRVTFHPH 467