BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0456.p         (132 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_298678.1| transcriptional regulator [Ralstonia eutropha J...   188   2e-46
ref|YP_004232423.1| AraC family transcriptional regulator [Burkh...   179   1e-43
ref|YP_001895746.1| AraC family transcriptional regulator [Burkh...   176   1e-42
ref|ZP_02887278.1| transcriptional regulator, AraC family [Burkh...   174   6e-42
ref|YP_001861141.1| AraC family transcriptional regulator [Burkh...   173   7e-42

>ref|YP_298678.1| transcriptional regulator [Ralstonia eutropha JMP134]
 gb|AAZ63834.1| transcriptional regulator, AraC family with amidase-like domain
           [Ralstonia eutropha JMP134]
          Length = 361

 Score =  188 bits (478), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/114 (76%), Positives = 100/114 (87%)

Query: 1   VTTHWDHAERLARQFPELNVRPDKIFVRDGNLFTCGGVTAGIDLCLALVAEDWGHELAIK 60
           VTTHW   +RL   FP   VRPDKIFVRDG+LFTCGGVTAGIDLCLAL+AED+GH LA+K
Sbjct: 126 VTTHWSETKRLQDHFPRAFVRPDKIFVRDGSLFTCGGVTAGIDLCLALLAEDFGHALAVK 185

Query: 61  VAKRLIVYIRREGGQSQYSPYLAVGPDEDSLVAKVLKYVTDHISDALTIEEIAD 114
           VAKRLIVYIRR+GGQSQYSPYLAVGP+EDS+V+K  +YV DHI+DA +IEE+AD
Sbjct: 186 VAKRLIVYIRRDGGQSQYSPYLAVGPEEDSIVSKARRYVDDHIADAFSIEELAD 239


>ref|YP_004232423.1| AraC family transcriptional regulator [Burkholderia sp. CCGE1001]
 gb|ADX59363.1| transcriptional regulator, AraC family [Burkholderia sp. CCGE1001]
          Length = 324

 Score =  179 bits (454), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 99/113 (87%)

Query: 1   VTTHWDHAERLARQFPELNVRPDKIFVRDGNLFTCGGVTAGIDLCLALVAEDWGHELAIK 60
           VTTHW  A RL+R+FP+ NV+PD+IFVRDG LFT  GVTAGIDLCL+LVAED+GHELA++
Sbjct: 124 VTTHWSDASRLSREFPQANVQPDRIFVRDGRLFTSAGVTAGIDLCLSLVAEDFGHELAVR 183

Query: 61  VAKRLIVYIRREGGQSQYSPYLAVGPDEDSLVAKVLKYVTDHISDALTIEEIA 113
           VAKRL+VYI+REGGQSQYSPY+  G DED ++ KV +YV++H++D L+IEE+A
Sbjct: 184 VAKRLVVYIQREGGQSQYSPYIGAGRDEDPIIGKVYRYVSEHLTDVLSIEELA 236


>ref|YP_001895746.1| AraC family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gb|ACD16522.1| transcriptional regulator, AraC family [Burkholderia phytofirmans
           PsJN]
          Length = 341

 Score =  176 bits (446), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 99/113 (87%)

Query: 1   VTTHWDHAERLARQFPELNVRPDKIFVRDGNLFTCGGVTAGIDLCLALVAEDWGHELAIK 60
           VTTHW  A RLA +FP+ +V+PD+IF+RDG LFT  GVTAGIDLCL+LVAEDWGHELA++
Sbjct: 124 VTTHWADASRLADEFPQASVQPDRIFIRDGRLFTSAGVTAGIDLCLSLVAEDWGHELAVR 183

Query: 61  VAKRLIVYIRREGGQSQYSPYLAVGPDEDSLVAKVLKYVTDHISDALTIEEIA 113
            AKRL+VYI+REGGQSQYSPY+ V  D+D +V KVL+YVT+HI++AL+IE++A
Sbjct: 184 AAKRLVVYIQREGGQSQYSPYVGVRKDQDPIVGKVLRYVTEHITEALSIEQLA 236


>ref|ZP_02887278.1| transcriptional regulator, AraC family [Burkholderia graminis
           C4D1M]
 gb|EDT07151.1| transcriptional regulator, AraC family [Burkholderia graminis
           C4D1M]
          Length = 341

 Score =  174 bits (440), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 76/113 (67%), Positives = 96/113 (84%)

Query: 1   VTTHWDHAERLARQFPELNVRPDKIFVRDGNLFTCGGVTAGIDLCLALVAEDWGHELAIK 60
           VTTHW  A RLA  FP   V+PD+IF+RDG LFT  GVTAGIDLCL+LVAEDWGHE+A++
Sbjct: 124 VTTHWADARRLADNFPLARVQPDRIFIRDGRLFTSAGVTAGIDLCLSLVAEDWGHEMAVR 183

Query: 61  VAKRLIVYIRREGGQSQYSPYLAVGPDEDSLVAKVLKYVTDHISDALTIEEIA 113
           VAKRL+VYI+REGGQSQYSPY+  G +E+ ++ KV +YVT+HI+DAL+IE++A
Sbjct: 184 VAKRLVVYIQREGGQSQYSPYIGAGKEENPIIGKVHRYVTEHITDALSIEQLA 236


>ref|YP_001861141.1| AraC family transcriptional regulator [Burkholderia phymatum
           STM815]
 gb|ACC74095.1| transcriptional regulator, AraC family [Burkholderia phymatum
           STM815]
          Length = 331

 Score =  173 bits (439), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 95/113 (84%)

Query: 1   VTTHWDHAERLARQFPELNVRPDKIFVRDGNLFTCGGVTAGIDLCLALVAEDWGHELAIK 60
           VTTHW  A RLA  FP+  V+PD+IF+RDG LFT  GVTAGIDLCL+LVAEDWGHELA++
Sbjct: 124 VTTHWSDAGRLADDFPQACVQPDRIFIRDGRLFTSAGVTAGIDLCLSLVAEDWGHELAVR 183

Query: 61  VAKRLIVYIRREGGQSQYSPYLAVGPDEDSLVAKVLKYVTDHISDALTIEEIA 113
           VAKRL+VYI+REGGQSQYSPY+ V  DED ++ KV +YV DHI+D L+IE++A
Sbjct: 184 VAKRLVVYIQREGGQSQYSPYVGVRRDEDPIIGKVQRYVMDHITDVLSIEQLA 236