BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0449.p (435 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777965.1| glycine/D-amino acid oxidase [Herbaspirillum... 566 e-159 ref|NP_773452.1| dehydrogenase [Bradyrhizobium japonicum USDA 11... 531 e-149 ref|YP_002501484.1| FAD dependent oxidoreductase [Methylobacteri... 513 e-143 ref|YP_002945559.1| D-amino-acid dehydrogenase [Variovorax parad... 488 e-135 ref|YP_995591.1| D-amino-acid dehydrogenase [Verminephrobacter e... 486 e-135 >ref|YP_003777965.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] gb|ADJ66057.1| glycine/D-amino acid oxidases (deaminating) protein [Herbaspirillum seropedicae SmR1] Length = 428 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 284/422 (67%), Positives = 330/422 (78%), Gaps = 4/422 (0%) Query: 17 SAARHVVVIGAGAVGLMSALHALDQGFQVTIVDPGQPGGEQASSYGNAGWLSSHSVLPPS 76 S RH VVIGAGAVGLMSA+HALDQG +V+++D G E+A+SYGNAGWLSSHSV+PP Sbjct: 8 SFPRHAVVIGAGAVGLMSAIHALDQGLEVSLLDFNPVGSEEAASYGNAGWLSSHSVIPPV 67 Query: 77 EPGVWKKVPGFLADPLGPLSVRWRYLPRTLPWLLRYLAAGSTTARISATAAAL-XLLHGA 135 EPG+WKKVPG+L DP+GPLS+RWRYLPR PWLLR LA+ + RI ATA AL L+ A Sbjct: 68 EPGMWKKVPGYLMDPIGPLSIRWRYLPRLTPWLLRNLAS-ARRERIRATARALRTLVVDA 126 Query: 136 APLHKAIAEQAGVGDLIDLGGLLHIYRSRAHFEADARGWGIRRKLGIGWQELSAQELHAR 195 LH IA +AGV LID G+LH+YRSR FE DA GW +RR+LGI W EL A+ L R Sbjct: 127 RTLHLDIARRAGVAHLIDTSGVLHVYRSRQQFEGDAFGWSVRRELGIQWSELEAEALRRR 186 Query: 196 EPDLDPAYGFGVLIPEAGHCRNPGAYIAALAAHACARGARLTAVTATGFRFEGNGLAAVQ 255 EPDLDPA+GF V + EAGHC+NP AY+ AL A+A ARGA ATGFR E L AV Sbjct: 187 EPDLDPAFGFAVQVDEAGHCKNPAAYLQALQAYALARGAHRIDARATGFRIEEGRLKAVL 246 Query: 256 TDAGDILCDAAVIAAGAQSKALAAKAGDKVPLETERGYHAMVLAPE--GRPRTPMMIMDR 313 T+ G++ CDAAVI AGA+SKALAA+AGD+V LE+ERGYHA++ E R RTPMM+ + Sbjct: 247 TETGEVACDAAVICAGARSKALAAQAGDRVQLESERGYHALIRGHEQAARARTPMMLSEF 306 Query: 314 KVIATQTEEGLRVAGQVEIASFDAAPDWRRAEIMRDLALKLFPALPRDLPANRVRYWLGR 373 KVIATQ E GLR+AGQVE ASF+AAPDWRR EIMRD+ALKLFP LPRDLPA VRYWLGR Sbjct: 307 KVIATQMETGLRIAGQVEFASFEAAPDWRRGEIMRDIALKLFPGLPRDLPAADVRYWLGR 366 Query: 374 RPSMPDGLPCIGRSSHSVDIIHAFGHGHIGLGSSARTGRLVGQLLAGQLPEIDMAPFSAQ 433 RPS PDG+PCIG + S DI+HA+GHGHIGLG SARTGR+V QLLAGQ PEID+APFS Q Sbjct: 367 RPSTPDGMPCIGYARASSDIVHAYGHGHIGLGCSARTGRIVAQLLAGQTPEIDLAPFSPQ 426 Query: 434 RF 435 RF Sbjct: 427 RF 428 >ref|NP_773452.1| dehydrogenase [Bradyrhizobium japonicum USDA 110] dbj|BAC52077.1| bll6812 [Bradyrhizobium japonicum USDA 110] Length = 421 Score = 531 bits (1368), Expect = e-149, Method: Compositional matrix adjust. Identities = 251/417 (60%), Positives = 321/417 (76%), Gaps = 2/417 (0%) Query: 20 RHVVVIGAGAVGLMSALHALDQGFQVTIVDPGQPGGEQASSYGNAGWLSSHSVLPPSEPG 79 RHV +IGAGAVG++SA+ AL +G +VT++DPG+PGGEQA+SYGNAGWLSSHSV+PP+EPG Sbjct: 5 RHVAIIGAGAVGVISAIEALREGHRVTLIDPGEPGGEQAASYGNAGWLSSHSVIPPAEPG 64 Query: 80 VWKKVPGFLADPLGPLSVRWRYLPRTLPWLLRYLAAGSTTARISATAAALX-LLHGAAPL 138 +WKKVPG+L DPLGPL++RW YLP+ LPWL++YL +G T AR+ TA AL LL A L Sbjct: 65 IWKKVPGYLMDPLGPLAIRWSYLPKALPWLIKYLLSGWTEARVEKTAFALRDLLKDAPLL 124 Query: 139 HKAIAEQAGVGDLIDLGGLLHIYRSRAHFEADARGWGIRRKLGIGWQELSAQELHAREPD 198 H+ +AE+AGV +LI+ G++H + SR +F+ D GW +R+K+G+ W EL+A E+ REPD Sbjct: 125 HRKLAEEAGVPELIERNGVMHAFPSRGNFDNDL-GWRLRKKVGVAWLELNADEMRQREPD 183 Query: 199 LDPAYGFGVLIPEAGHCRNPGAYIAALAAHACARGARLTAVTATGFRFEGNGLAAVQTDA 258 L P Y FGV++ EAG CR+PGAY+AALA HA A GA+L ATG + GN L AV T+ Sbjct: 184 LHPRYSFGVVVEEAGRCRDPGAYVAALANHALASGAKLVRAKATGLKLSGNKLVAVVTET 243 Query: 259 GDILCDAAVIAAGAQSKALAAKAGDKVPLETERGYHAMVLAPEGRPRTPMMIMDRKVIAT 318 G+I CDAAV+AAGA+SK L A GD +PLETERGYH M+ PE PR+ +M D K++ Sbjct: 244 GEIACDAAVVAAGARSKQLTASVGDPLPLETERGYHVMIENPETGPRSSIMASDAKMVVN 303 Query: 319 QTEEGLRVAGQVEIASFDAAPDWRRAEIMRDLALKLFPALPRDLPANRVRYWLGRRPSMP 378 T +GLR AG VEIA +AAP+W+RAEI+RD +FP LPRD+PA+R++ W G RPSMP Sbjct: 304 WTNKGLRAAGTVEIAGLEAAPNWKRAEILRDHLFSMFPKLPRDIPASRIKTWFGHRPSMP 363 Query: 379 DGLPCIGRSSHSVDIIHAFGHGHIGLGSSARTGRLVGQLLAGQLPEIDMAPFSAQRF 435 DGLPCIG + S DI++AFGHGH+GL SARTGRLV QLL+G+ PEI +APFS RF Sbjct: 364 DGLPCIGHARASRDIVYAFGHGHVGLVGSARTGRLVAQLLSGKQPEIPLAPFSPTRF 420 >ref|YP_002501484.1| FAD dependent oxidoreductase [Methylobacterium nodulans ORS 2060] gb|ACL61181.1| FAD dependent oxidoreductase [Methylobacterium nodulans ORS 2060] Length = 424 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 250/420 (59%), Positives = 310/420 (73%), Gaps = 1/420 (0%) Query: 17 SAARHVVVIGAGAVGLMSALHALDQGFQVTIVDPGQPGGEQASSYGNAGWLSSHSVLPPS 76 + RHVV+IG+GAVG +SA+ L G +VT+VDPGQPGGEQASSYGNAGWLSSHSV+PP+ Sbjct: 4 TTGRHVVIIGSGAVGTVSAIECLRAGHRVTVVDPGQPGGEQASSYGNAGWLSSHSVIPPA 63 Query: 77 EPGVWKKVPGFLADPLGPLSVRWRYLPRTLPWLLRYLAAGSTTARISATAAAL-XLLHGA 135 EPG+WKKVP FL DPLGPLS+RW YLP+ LPWL+R+L A T+A+I TA A+ LL A Sbjct: 64 EPGMWKKVPSFLLDPLGPLSIRWAYLPKVLPWLIRFLLAARTSAQIEHTAQAMRTLLVDA 123 Query: 136 APLHKAIAEQAGVGDLIDLGGLLHIYRSRAHFEADARGWGIRRKLGIGWQELSAQELHAR 195 LH ++A +AGV LI+ G+LH+Y R FE DAR W IRRK+G+ W ELSA+EL R Sbjct: 124 PKLHASLAAEAGVPQLIERRGVLHVYPDRTAFEGDARSWAIRRKVGVEWLELSAEELRQR 183 Query: 196 EPDLDPAYGFGVLIPEAGHCRNPGAYIAALAAHACARGARLTAVTATGFRFEGNGLAAVQ 255 EP+L P Y FG+++ EAGHCR+PG YIAAL+ AC RGA ATGFR EG+ L AV Sbjct: 184 EPNLHPRYTFGLVVEEAGHCRDPGNYIAALSKLACERGATYVTTRATGFRLEGSRLTAVT 243 Query: 256 TDAGDILCDAAVIAAGAQSKALAAKAGDKVPLETERGYHAMVLAPEGRPRTPMMIMDRKV 315 T+ G+I CD AV+AAGA+SK LAA GD +PLE+ERGYH M+ + PRTPMM D K+ Sbjct: 244 TEQGEIACDCAVVAAGARSKTLAASLGDALPLESERGYHVMIPDAKVGPRTPMMASDAKM 303 Query: 316 IATQTEEGLRVAGQVEIASFDAAPDWRRAEIMRDLALKLFPALPRDLPANRVRYWLGRRP 375 IA GLR AGQVE A A P+W+RAEI+R+ + +FP L +PA+R+R WLG RP Sbjct: 304 IANFMNGGLRAAGQVEFAGLAAVPNWKRAEILRNHLISMFPGLAGTVPADRLRVWLGHRP 363 Query: 376 SMPDGLPCIGRSSHSVDIIHAFGHGHIGLGSSARTGRLVGQLLAGQLPEIDMAPFSAQRF 435 SMPDG PCIG + + D+I+AFGHGH+ L SARTGRLV QL++ PEI +APF +RF Sbjct: 364 SMPDGRPCIGPARKTSDVIYAFGHGHVSLVGSARTGRLVAQLVSCSAPEIPLAPFDPRRF 423 >ref|YP_002945559.1| D-amino-acid dehydrogenase [Variovorax paradoxus S110] gb|ACS20293.1| D-amino-acid dehydrogenase [Variovorax paradoxus S110] Length = 432 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 263/424 (62%), Positives = 310/424 (73%), Gaps = 2/424 (0%) Query: 14 SSTSAARHVVVIGAGAVGLMSALHALDQGFQVTIVDPGQPGGEQASSYGNAGWLSSHSVL 73 S+ AARHVVVIGAGAVG +A+ AL G +VT+V+PG+ GG QA+SYGNAGWLSSHSV+ Sbjct: 8 SAGGAARHVVVIGAGAVGSATAIEALRAGLRVTVVEPGEAGGPQATSYGNAGWLSSHSVV 67 Query: 74 PPSEPGVWKKVPGFLADPLGPLSVRWRYLPRTLPWLLRYLAAGSTTARISATAAALXLLH 133 PP+ PG W+KVPG+LADPLGPL++RWRYLP+ LPWLLRYLA+G T AR+ TA AL L Sbjct: 68 PPALPGAWRKVPGWLADPLGPLALRWRYLPQALPWLLRYLASGWTEARVQRTADALRTLL 127 Query: 134 GAAP-LHKAIAEQAGVGDLIDLGGLLHIYRSRAHFEADARGWGIRRKLGIGWQELSAQEL 192 AP LH +A +AGV LI+ GLLH YRSR FE DA GW +RR+ G+ W+E EL Sbjct: 128 ADAPALHARLAAEAGVPQLIERRGLLHAYRSREEFEGDAFGWRVRRRTGVHWEEWPVAEL 187 Query: 193 HAREPDLDPAYGFGVLIPEAGHCRNPGAYIAALAAHACARGARLTAVTATGFRFEGNGLA 252 H REPDLD Y G+ +PEAGHCRNPGAY+AALA HA GA+ A +ATGFR EG L Sbjct: 188 HRREPDLDARYTLGIFVPEAGHCRNPGAYVAALARHAQEAGAQRVAASATGFRIEGGRLR 247 Query: 253 AVQTDAGDILCDAAVIAAGAQSKALAAKAGDKVPLETERGYHAMVLAPEGRPRTPMMIMD 312 AV+TDAG+I CDAA I AGA+S LAA AG VPLE+ERGYH +V PRTP M+ D Sbjct: 248 AVRTDAGEIACDAAAICAGARSGPLAAAAGSPVPLESERGYHVVVEGASAGPRTPTMVAD 307 Query: 313 RKVIATQTEEGLRVAGQVEIASFDAAPDWRRAEIMRDLALKLFPALPRDLP-ANRVRYWL 371 K+IA + GLR AGQVEI DA PDWRRAEI+ L +FPAL + P A V++WL Sbjct: 308 GKLIAHWMDGGLRAAGQVEIGGLDAPPDWRRAEILHRHLLSMFPALAAEAPQAVAVKHWL 367 Query: 372 GRRPSMPDGLPCIGRSSHSVDIIHAFGHGHIGLGSSARTGRLVGQLLAGQLPEIDMAPFS 431 G RPS+PDGLPCIG S+ S DI+ AFGHGH+GL SARTGRL QLLAG PE +APF Sbjct: 368 GHRPSLPDGLPCIGASAASADIVLAFGHGHVGLCGSARTGRLAAQLLAGSTPETALAPFD 427 Query: 432 AQRF 435 RF Sbjct: 428 PARF 431 >ref|YP_995591.1| D-amino-acid dehydrogenase [Verminephrobacter eiseniae EF01-2] gb|ABM56573.1| D-amino-acid dehydrogenase [Verminephrobacter eiseniae EF01-2] Length = 438 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 261/423 (61%), Positives = 310/423 (73%), Gaps = 7/423 (1%) Query: 20 RHVVVIGAGAVGLMSALHALDQGFQVTIVDPGQPGGEQASSYGNAGWLSSHSVLPPSEPG 79 RHVV+IGAG VG +SA+ AL G +VT+V+ G GGEQA+SYGNAGWLSSHSV+ P+EPG Sbjct: 10 RHVVIIGAGIVGAVSAIEALRAGLRVTLVEAGPAGGEQAASYGNAGWLSSHSVIAPAEPG 69 Query: 80 VWKKVPGFLADPLGPLSVRWRYLPRTLPWLLRYLAAGSTTARISATAAAL-XLLHGAAPL 138 +WKKVPGF+ DPLGPL++R RYLP+ PWL+RYLA+G T AR+ TA AL LL A L Sbjct: 70 LWKKVPGFVLDPLGPLAIRMRYLPQVAPWLMRYLASGWTEARVEKTAHALRALLVDAPAL 129 Query: 139 HKAIAEQAGVGDLIDLGGLLHIYRSRAHFEADARGWGIRRKLGIGWQELSAQELHAREPD 198 H +A AGV LI+ GLLH Y SR+ FEAD W +R K G+ WQEL A LHA EP Sbjct: 130 HHDLASAAGVAALIERRGLLHAYPSRSDFEADGLAWRVRHKTGVRWQELQADALHALEPA 189 Query: 199 LDPAYGFGVLIPEAGHCRNPGAYIAALAAHACARGARLTAVTATGFRFEGNGLAAVQTDA 258 L P Y FGV + EAGHCR+PGAY+ AL AHACA+GA ATGFRFE L AV+ Sbjct: 190 LHPRYQFGVWVGEAGHCRDPGAYVGALVAHACAQGAASICAQATGFRFESGRLRAVRAAG 249 Query: 259 GDILCDAAVIAAGAQSKALAAKAGDKVPLETERGYHAMVLAPE------GRPRTPMMIMD 312 DI CDAAVIAAGA S+ALAA AGD +PLETERGYH +V AP+ P+ P+M+ D Sbjct: 250 ADIGCDAAVIAAGAHSRALAALAGDLLPLETERGYHVIVDAPQMLPERPQLPQLPVMVSD 309 Query: 313 RKVIATQTEEGLRVAGQVEIASFDAAPDWRRAEIMRDLALKLFPALPRDLPANRVRYWLG 372 K AT E GLR+AGQVEIA AAP+WRRAEI+RD L++FP LP LPA + YW+G Sbjct: 310 CKAGATPMERGLRIAGQVEIAGLKAAPNWRRAEILRDHLLRIFPGLPAPLPAASLHYWMG 369 Query: 373 RRPSMPDGLPCIGRSSHSVDIIHAFGHGHIGLGSSARTGRLVGQLLAGQLPEIDMAPFSA 432 RPSMPDG PCIG +S S D++HAFGHGHIGL S+ARTGRLV QLL+ + PEID+APF Sbjct: 370 HRPSMPDGRPCIGYASASRDVVHAFGHGHIGLASAARTGRLVAQLLSDRTPEIDLAPFDP 429 Query: 433 QRF 435 +RF Sbjct: 430 RRF 432