BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0438.p         (140 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004751501.1| ATP-dependent DNA helicase [Collimonas fungi...   229   7e-59
ref|YP_003773922.1| ATP-dependent DNA helicase [Herbaspirillum s...   228   2e-58
ref|ZP_08273323.1| ATP-dependent DNA helicase RecQ [Oxalobactera...   218   3e-55
ref|YP_001100947.1| ATP-dependent DNA helicase [Herminiimonas ar...   209   8e-53
ref|YP_001354619.1| ATP-dependent DNA helicase [Janthinobacteriu...   205   2e-51

>ref|YP_004751501.1| ATP-dependent DNA helicase [Collimonas fungivorans Ter331]
 gb|AEK60678.1| ATP-dependent DNA helicase [Collimonas fungivorans Ter331]
          Length = 614

 Score =  229 bits (585), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 111/139 (79%), Positives = 123/139 (88%), Gaps = 1/139 (0%)

Query: 1   VLRQVIALGLLTVDHENYSSLKLTEEAKPVLRGEQKIQLRQYQKPVKPKRSSSSSKSNYV 60
           +LRQ IALGL+TVDHE YS+LKLT+ A+PVLRGEQ +QLRQYQKPVK KRS S  K  YV
Sbjct: 477 ILRQSIALGLITVDHEAYSALKLTDAARPVLRGEQPVQLRQYQKPVKQKRSGSKPK-GYV 535

Query: 61  ETDLSTEEQTIFDKLRWWRVETARKHNVPAYVIFHDATMREIAKAKPSSLDDLRGVTGVG 120
           ETDLST EQ IF+KLRWWRVETARKHNVPAYVIFHDATMREIAKA+P+SL DLRGV+GVG
Sbjct: 536 ETDLSTLEQAIFEKLRWWRVETARKHNVPAYVIFHDATMREIAKAQPASLGDLRGVSGVG 595

Query: 121 EKKLETYGAEIISLIREIS 139
           EKKLETYGAEI+ LI E +
Sbjct: 596 EKKLETYGAEIVELIAEFT 614


>ref|YP_003773922.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1]
 gb|ADJ62014.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 618

 Score =  228 bits (582), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 110/138 (79%), Positives = 125/138 (90%), Gaps = 2/138 (1%)

Query: 1   VLRQVIALGLLTVDHENYSSLKLTEEAKPVLRGEQKIQLRQYQKPVKPKRSSSSSKSNYV 60
           +LRQVIALGLLTVD +NYS+LKLTE A+PVLRGEQ +QLR+YQKP K KRSS   +S++V
Sbjct: 477 ILRQVIALGLLTVDADNYSALKLTEAARPVLRGEQAVQLRRYQKPEKAKRSSQ--RSSFV 534

Query: 61  ETDLSTEEQTIFDKLRWWRVETARKHNVPAYVIFHDATMREIAKAKPSSLDDLRGVTGVG 120
           ETDLSTEEQ +F+KLRWWRVETAR HNVPAYVIFHDATMREIAKA+P SLDDLR VTGVG
Sbjct: 535 ETDLSTEEQALFEKLRWWRVETARAHNVPAYVIFHDATMREIAKARPQSLDDLRHVTGVG 594

Query: 121 EKKLETYGAEIISLIREI 138
           EKKLETYGA+II+LI E+
Sbjct: 595 EKKLETYGAQIIALIAEM 612


>ref|ZP_08273323.1| ATP-dependent DNA helicase RecQ [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33195.1| ATP-dependent DNA helicase RecQ [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 611

 Score =  218 bits (554), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 102/139 (73%), Positives = 122/139 (87%), Gaps = 1/139 (0%)

Query: 1   VLRQVIALGLLTVDHENYSSLKLTEEAKPVLRGEQKIQLRQYQKPVKPKRSSSS-SKSNY 59
           +LRQ IALGL+ VD+E+Y++LKLT+ AKPVLRG +++QLR+YQKPVK KR++S  +   Y
Sbjct: 470 ILRQSIALGLVAVDYESYNALKLTDAAKPVLRGGEQVQLREYQKPVKAKRAASGKAPKGY 529

Query: 60  VETDLSTEEQTIFDKLRWWRVETARKHNVPAYVIFHDATMREIAKAKPSSLDDLRGVTGV 119
           VE +LS  +Q IFDKLRWWRVETARKHNVPAYVIFHDATMREIAKA+P SLDDLRGV+GV
Sbjct: 530 VENELSGLDQVIFDKLRWWRVETARKHNVPAYVIFHDATMREIAKARPGSLDDLRGVSGV 589

Query: 120 GEKKLETYGAEIISLIREI 138
           GEKKLETYGAEI+ LI E+
Sbjct: 590 GEKKLETYGAEIVGLIAEL 608


>ref|YP_001100947.1| ATP-dependent DNA helicase [Herminiimonas arsenicoxydans]
 emb|CAL62826.1| ATP-dependent DNA helicase RecQ [Herminiimonas arsenicoxydans]
          Length = 608

 Score =  209 bits (533), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 96/135 (71%), Positives = 120/135 (88%), Gaps = 1/135 (0%)

Query: 1   VLRQVIALGLLTVDHENYSSLKLTEEAKPVLRGEQKIQLRQYQKPVKPKRSSSSSKSNYV 60
           +LRQ IALGL+ VDHE YS+LKLT+ A+PVL+G +K+QLR+YQKPVK +R+SS  K  ++
Sbjct: 472 ILRQSIALGLVAVDHEAYSALKLTDAARPVLKGGEKVQLREYQKPVKSRRTSSKPK-GFI 530

Query: 61  ETDLSTEEQTIFDKLRWWRVETARKHNVPAYVIFHDATMREIAKAKPSSLDDLRGVTGVG 120
           ETDLS EEQ IF+KLRWWR+ETAR HNVPAYVIF+DATMREIAK +P++L DLRGV+GVG
Sbjct: 531 ETDLSAEEQAIFEKLRWWRMETARTHNVPAYVIFNDATMREIAKTQPATLADLRGVSGVG 590

Query: 121 EKKLETYGAEIISLI 135
           EKKLE+YGA+I++LI
Sbjct: 591 EKKLESYGADIVALI 605


>ref|YP_001354619.1| ATP-dependent DNA helicase [Janthinobacterium sp. Marseille]
 gb|ABR88543.1| ATP-dependent DNA helicase [Janthinobacterium sp. Marseille]
          Length = 607

 Score =  205 bits (521), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/138 (73%), Positives = 124/138 (89%), Gaps = 1/138 (0%)

Query: 1   VLRQVIALGLLTVDHENYSSLKLTEEAKPVLRGEQKIQLRQYQKPVKPKRSSSSSKSNYV 60
           +LRQ IALGL++VDHE+Y +LKLTE A+PVL+G +K+QLR+YQKP+K  + SSS    +V
Sbjct: 470 ILRQSIALGLVSVDHESYGALKLTEAARPVLKGGEKVQLREYQKPLK-SKRSSSKPKGFV 528

Query: 61  ETDLSTEEQTIFDKLRWWRVETARKHNVPAYVIFHDATMREIAKAKPSSLDDLRGVTGVG 120
           ETDLST EQ +F+KLRWWR+ETARKHNVPAYVIFHDATMREIAKA+P+SLDDLRGV+GVG
Sbjct: 529 ETDLSTAEQAVFEKLRWWRMETARKHNVPAYVIFHDATMREIAKAQPASLDDLRGVSGVG 588

Query: 121 EKKLETYGAEIISLIREI 138
           EKKLETYGA+I++LI E+
Sbjct: 589 EKKLETYGADIVALIAEM 606