BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0414.p (208 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773940.1| transmembrane protein [Herbaspirillum serope... 313 1e-83 ref|YP_004751152.1| hypothetical protein CFU_0492 [Collimonas fu... 305 2e-81 ref|YP_004715026.1| hypothetical protein PSTAB_2656 [Pseudomonas... 296 1e-78 ref|YP_001173165.1| hypothetical protein PST_2673 [Pseudomonas s... 265 2e-69 ref|ZP_05133358.1| bicyclomycin/multidrug efflux system [Stenotr... 246 2e-63 >ref|YP_003773940.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62032.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 208 Score = 313 bits (802), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 158/208 (75%), Positives = 188/208 (90%) Query: 1 MLLYTIYLIAISAEAMSGAIMGIRREMDLFGICLIGTVAALGGGTVRDILIGHYPLGWVA 60 MLL+TIYLIAI AEA+SGA+MGIR++MD+FG+CLIGTVAALGGGT+RDILIGHYPLGWVA Sbjct: 1 MLLHTIYLIAICAEAISGALMGIRKDMDIFGVCLIGTVAALGGGTMRDILIGHYPLGWVA 60 Query: 61 HPEYLAFTICAAVVTAVAARKMHHFKSAFLVVDALGLVAFTIIGCDIARGFAHFNPFVVV 120 HPEYLAFTICAAVV AVAAR +HHFKSAFLVVDALGLVAFT+IGCDIARGFA F+P +VV Sbjct: 61 HPEYLAFTICAAVVAAVAARALHHFKSAFLVVDALGLVAFTVIGCDIARGFADFHPAIVV 120 Query: 121 IFGMITGVFGGLLRDVLCNEIPLVLQREVYASVSLVTGGLYVGMLWLNIDASVSTLTALG 180 + GM+TGVFGGLLRDVLCNEIPLVL+RE+YASVSL+TG YVG+L L +D ++T+++L Sbjct: 121 MLGMVTGVFGGLLRDVLCNEIPLVLRREIYASVSLLTGATYVGVLHLQVDPRIATMSSLL 180 Query: 181 VGFLFRLLAIRYHWTLPKFNDKDIRGFE 208 +GF RLLAIR+HW LP+ + +RGF+ Sbjct: 181 LGFAVRLLAIRFHWELPRMDKDRVRGFD 208 >ref|YP_004751152.1| hypothetical protein CFU_0492 [Collimonas fungivorans Ter331] gb|AEK60329.1| hypothetical protein CFU_0492 [Collimonas fungivorans Ter331] Length = 207 Score = 305 bits (781), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 147/208 (70%), Positives = 179/208 (86%), Gaps = 1/208 (0%) Query: 1 MLLYTIYLIAISAEAMSGAIMGIRREMDLFGICLIGTVAALGGGTVRDILIGHYPLGWVA 60 MLL+TIYLIAI AEAMSGAIMG+RR+MDLFGIC++GT+ ALGGG++RDIL+G+YPLGW+A Sbjct: 1 MLLHTIYLIAIVAEAMSGAIMGMRRDMDLFGICVVGTITALGGGSMRDILLGNYPLGWIA 60 Query: 61 HPEYLAFTICAAVVTAVAARKMHHFKSAFLVVDALGLVAFTIIGCDIARGFAHFNPFVVV 120 HPEYL FTI AAVVTA+ AR +HH +S FLVVD LGLVAF++IGCD+AR A P +V+ Sbjct: 61 HPEYLLFTIGAAVVTALVARFLHHLRSVFLVVDGLGLVAFSVIGCDVARA-AGMAPGIVI 119 Query: 121 IFGMITGVFGGLLRDVLCNEIPLVLQREVYASVSLVTGGLYVGMLWLNIDASVSTLTALG 180 + GMITGVFGGLLRDVLCNEIPLVLQRE+YA+++L TG LYVG+LW ++D+S + L A+G Sbjct: 120 LAGMITGVFGGLLRDVLCNEIPLVLQRELYATIALFTGALYVGLLWWDVDSSAAPLIAIG 179 Query: 181 VGFLFRLLAIRYHWTLPKFNDKDIRGFE 208 GFL RLLA+R+HW LP FN IRGFE Sbjct: 180 AGFLVRLLALRFHWKLPSFNGSGIRGFE 207 >ref|YP_004715026.1| hypothetical protein PSTAB_2656 [Pseudomonas stutzeri ATCC 17588 = LMG 11199] gb|AEA84674.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] gb|AEJ05937.1| hypothetical protein PSTAB_2656 [Pseudomonas stutzeri ATCC 17588 = LMG 11199] Length = 208 Score = 296 bits (759), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 141/207 (68%), Positives = 174/207 (84%), Gaps = 1/207 (0%) Query: 2 LLYTIYLIAISAEAMSGAIMGIRREMDLFGICLIGTVAALGGGTVRDILIGHYPLGWVAH 61 LL+TIYLIAI+AEAMSGAIMG+RR MDLFGICL+GTV ALGGGT RD+L+GHYP+GW+AH Sbjct: 3 LLHTIYLIAITAEAMSGAIMGMRRGMDLFGICLLGTVTALGGGTARDVLLGHYPVGWIAH 62 Query: 62 PEYLAFTICAAVVTAVAARKMHHFKSAFLVVDALGLVAFTIIGCDIARGFAHFNPFVVVI 121 PEYL FTI AA+VT AR +HH + FL+VD LGLVAFT+IGCD+A G +P +VV+ Sbjct: 63 PEYLTFTIGAAIVTGFIARHLHHLRMVFLLVDGLGLVAFTVIGCDVAMGMGA-HPSIVVL 121 Query: 122 FGMITGVFGGLLRDVLCNEIPLVLQREVYASVSLVTGGLYVGMLWLNIDASVSTLTALGV 181 G+ITG+FGGL+RDVLCN++P+VLQRE+YA+V+L TG YVGMLWL I+ +++TL ALG Sbjct: 122 AGVITGIFGGLMRDVLCNQVPMVLQRELYATVALFTGVFYVGMLWLEINTTLATLAALGS 181 Query: 182 GFLFRLLAIRYHWTLPKFNDKDIRGFE 208 GFLFR+LA+ + W LP FN KDIRG E Sbjct: 182 GFLFRVLAMTFSWKLPDFNGKDIRGLE 208 >ref|YP_001173165.1| hypothetical protein PST_2673 [Pseudomonas stutzeri A1501] gb|ABP80323.1| membrane protein, putative [Pseudomonas stutzeri A1501] Length = 187 Score = 265 bits (678), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 124/188 (65%), Positives = 155/188 (82%), Gaps = 1/188 (0%) Query: 21 MGIRREMDLFGICLIGTVAALGGGTVRDILIGHYPLGWVAHPEYLAFTICAAVVTAVAAR 80 MG+RR MDLFGICL+GTV ALGGGT RD+L+GHYP+GW+AHPEYL FTI AA+VT AR Sbjct: 1 MGMRRGMDLFGICLLGTVTALGGGTARDVLLGHYPVGWIAHPEYLTFTIGAAIVTGFIAR 60 Query: 81 KMHHFKSAFLVVDALGLVAFTIIGCDIARGFAHFNPFVVVIFGMITGVFGGLLRDVLCNE 140 +HH + FL+VD LGLVAFT+IGCD+A G +P +VV+ G+ITG+FGGL+RDVLCN+ Sbjct: 61 HLHHLRMVFLLVDGLGLVAFTVIGCDVAMGMGA-HPSIVVLAGVITGIFGGLMRDVLCNQ 119 Query: 141 IPLVLQREVYASVSLVTGGLYVGMLWLNIDASVSTLTALGVGFLFRLLAIRYHWTLPKFN 200 +P+VLQRE+YA+V+L TG YVGMLWL I+ +++TL ALG GFLFR+LA+ + W LP FN Sbjct: 120 VPMVLQRELYATVALFTGVFYVGMLWLEINTTLATLAALGSGFLFRVLAMTFSWKLPDFN 179 Query: 201 DKDIRGFE 208 KDIRG E Sbjct: 180 GKDIRGLE 187 >ref|ZP_05133358.1| bicyclomycin/multidrug efflux system [Stenotrophomonas sp. SKA14] gb|EED37419.1| bicyclomycin/multidrug efflux system [Stenotrophomonas sp. SKA14] Length = 205 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 120/203 (59%), Positives = 152/203 (74%), Gaps = 1/203 (0%) Query: 1 MLLYTIYLIAISAEAMSGAIMGIRREMDLFGICLIGTVAALGGGTVRDILIGHYPLGWVA 60 MLL IYLIAISAEAM+GA+ RR MDLFG+ +I V ALGGG++RDIL+GHYPLGWV Sbjct: 1 MLLSIIYLIAISAEAMTGALSAGRRRMDLFGVVMIACVTALGGGSLRDILLGHYPLGWVK 60 Query: 61 HPEYLAFTICAAVVTAVAARKMHHFKSAFLVVDALGLVAFTIIGCDIARGFAHFNPFVVV 120 HPEYL FT+CAA++ AR MHHF+ FLV+D LGL+AFT+IGC IAR H P +V+ Sbjct: 61 HPEYLGFTVCAALIATWVARWMHHFRRTFLVLDGLGLIAFTLIGCSIAREAGHATP-IVL 119 Query: 121 IFGMITGVFGGLLRDVLCNEIPLVLQREVYASVSLVTGGLYVGMLWLNIDASVSTLTALG 180 I GM+TG FGG+LRD+LCNE+PL+ Q+E+YA +SL+TG +Y+ +L + + + L LG Sbjct: 120 IAGMLTGAFGGVLRDILCNEVPLIFQKELYAIISLLTGAVYLLLLHWGVADATAILCCLG 179 Query: 181 VGFLFRLLAIRYHWTLPKFNDKD 203 GF RLLAI Y W +PKF D Sbjct: 180 GGFALRLLAIHYRWEMPKFVYHD 202