BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0411.p (376 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004828750.1| Extracellular ligand-binding receptor [Enter... 280 4e-73 ref|ZP_03569780.1| putative periplasmic substrate-binding protei... 279 5e-73 gb|EGD05583.1| ABC-type branched-chain amino acid transport syst... 279 6e-73 ref|YP_001584463.1| extracellular ligand-binding receptor [Burkh... 278 1e-72 ref|ZP_02377100.1| Extracellular ligand-binding receptor [Burkho... 278 1e-72 >ref|YP_004828750.1| Extracellular ligand-binding receptor [Enterobacter asburiae LF7a] gb|AEN64965.1| Extracellular ligand-binding receptor [Enterobacter asburiae LF7a] Length = 385 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 153/376 (40%), Positives = 218/376 (57%), Gaps = 3/376 (0%) Query: 1 MKLSILLPALFLAAAAHAQSIGANEQLVLVGVAAPLTSPRTESGI---AAVRLAFDEANR 57 +K+S L A+ L+ A + A+ + V++G+A PLT P G +LA D+ N+ Sbjct: 4 VKISALSAAILLSGFASTGAWAADSETVVIGLAGPLTGPSARIGKDLENGAQLAIDDINK 63 Query: 58 RAIRIGGKQLVFRLLVEDDKGDAMFAAPIAQYFIRSKVVGVIGHWNSGPSIAVAGLYSAA 117 + IGGK + F+L EDD+ D A +AQ + S V GV+GHWN+G SI A +Y A Sbjct: 64 QHPTIGGKAVTFKLQSEDDQSDPRTAVAVAQRLVDSGVAGVVGHWNTGTSIPAARVYHDA 123 Query: 118 GIPQIPMATTSSRFTQDGLRSIFQVQGHDGVGAVRLAEFVVRHLQAARIAVIEDGTAYGT 177 GI Q+ T +T+ G + F+V GHD G ++ V L+A RIAVI+D TA+G Sbjct: 124 GIAQVAPVATGHAYTKQGFDTSFRVMGHDDDGGQFAGQYAVNTLKAKRIAVIDDRTAFGQ 183 Query: 178 DFADSFVSGVRRAGGLIVSREAISSKTSDFNPALNNVQKANADVIVFGGVVTQSALLARS 237 AD F+ + G IV R+ + KT DF+ L ++ NAD+I FGGV +Q+A LAR Sbjct: 184 GLADEFIKSLEAQGVKIVDRQYVDDKTVDFSAVLTAIRSKNADLIFFGGVDSQAAPLARR 243 Query: 238 MMRRDMNIRLVGTGGTATGLFLQLAEGVQGNVWALETGVPRDRLPGWREFNDKMHSRFQG 297 + + MN L+G GG + FLQLA+ V ALE G+P D++PG + F SR+ Sbjct: 244 IKQLGMNATLMGAGGFVSQTFLQLAQKEGEGVVALEPGLPVDQMPGGKAFEQAYQSRYHT 303 Query: 298 EITHYALFAYDAANVLVAAIQKAGSLDPKAVTIALHEIRYPGLTGILSFDANGALINPVY 357 I +A FAYDA VLVAA++KA S+DP AL I Y G+TG ++FD G L P + Sbjct: 304 HIELHAPFAYDATRVLVAAMEKANSVDPSEYLPALRAINYSGVTGQIAFDNEGNLKAPSF 363 Query: 358 TIYRLDQGKWSVEKML 373 T+Y++ GKW + +L Sbjct: 364 TVYKVVDGKWQPQTVL 379 >ref|ZP_03569780.1| putative periplasmic substrate-binding protein [Burkholderia multivorans CGD2M] ref|ZP_03576421.1| putative periplasmic substrate-binding protein [Burkholderia multivorans CGD2] gb|EEE09764.1| putative periplasmic substrate-binding protein [Burkholderia multivorans CGD2] gb|EEE15687.1| putative periplasmic substrate-binding protein [Burkholderia multivorans CGD2M] Length = 388 Score = 279 bits (714), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 154/368 (41%), Positives = 225/368 (61%), Gaps = 6/368 (1%) Query: 9 ALFLAAAAHAQSIGANEQLVLVGVAAPLTSPRTESGI---AAVRLAFDEANRRAIRIGGK 65 AL + A AQS Q +L+G+AAPLT P G +LA D+AN + IGGK Sbjct: 16 ALVASVTAGAQSA---PQTILIGLAAPLTGPSARIGKDLQNGAQLAIDDANAKHPTIGGK 72 Query: 66 QLVFRLLVEDDKGDAMFAAPIAQYFIRSKVVGVIGHWNSGPSIAVAGLYSAAGIPQIPMA 125 +V++L+ DD+ D A +AQ + V+GV+GHWN+G S+ + +Y AGIPQI A Sbjct: 73 PVVYKLVAADDQSDPRTAVAVAQQLVDQHVIGVVGHWNTGCSVPASRVYRDAGIPQIAPA 132 Query: 126 TTSSRFTQDGLRSIFQVQGHDGVGAVRLAEFVVRHLQAARIAVIEDGTAYGTDFADSFVS 185 +T ++TQ G + F++ GHD G + V+ L+A RIAVI+D T++G AD F+ Sbjct: 133 STGHQYTQQGYATAFRIMGHDDAGGNFTGAYAVKTLKAKRIAVIDDRTSFGAGLADQFIK 192 Query: 186 GVRRAGGLIVSREAISSKTSDFNPALNNVQKANADVIVFGGVVTQSALLARSMMRRDMNI 245 GV+ GG IV R+ ++ KT+DF+ L ++ AD++ FGG+ Q+A +AR M + +N+ Sbjct: 193 GVQANGGTIVDRQYVNDKTTDFSGVLTAIKGKRADLVFFGGLDAQAAPIARRMRQLGVNV 252 Query: 246 RLVGTGGTATGLFLQLAEGVQGNVWALETGVPRDRLPGWREFNDKMHSRFQGEITHYALF 305 L+G GG + FL LA V ALE G+P +R+PG + F+ + +RF+ I +A F Sbjct: 253 PLLGAGGFVSQTFLSLAGKDGDGVTALEPGLPLERMPGGKAFDAQYQARFRAPIELHAPF 312 Query: 306 AYDAANVLVAAIQKAGSLDPKAVTIALHEIRYPGLTGILSFDANGALINPVYTIYRLDQG 365 AYDAA L+AA QKAGS P + A+ EI PG+TG ++FD G L NP +TIY++ G Sbjct: 313 AYDAAATLIAAAQKAGSTQPAKLVAAVREIDRPGVTGEIAFDKEGNLKNPAFTIYQVRGG 372 Query: 366 KWSVEKML 373 KW+V +L Sbjct: 373 KWTVVDVL 380 >gb|EGD05583.1| ABC-type branched-chain amino acid transport system periplasmic component [Burkholderia sp. TJI49] Length = 388 Score = 279 bits (713), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 154/368 (41%), Positives = 224/368 (60%), Gaps = 6/368 (1%) Query: 9 ALFLAAAAHAQSIGANEQLVLVGVAAPLTSPRTESGI---AAVRLAFDEANRRAIRIGGK 65 AL + A AQS Q +L+G+AAPLT P G +LA D+AN + IGGK Sbjct: 16 ALIASVPAFAQSA---PQTILIGLAAPLTGPSARIGKDLQNGAQLAIDDANAKHPTIGGK 72 Query: 66 QLVFRLLVEDDKGDAMFAAPIAQYFIRSKVVGVIGHWNSGPSIAVAGLYSAAGIPQIPMA 125 +V++L+ DD+ D A +AQ + V+GV+GHWN+G S+ + +Y AGIPQI A Sbjct: 73 PVVYKLVAADDQSDPRTAVAVAQQLVDQHVIGVVGHWNTGCSVPASRVYRDAGIPQIAPA 132 Query: 126 TTSSRFTQDGLRSIFQVQGHDGVGAVRLAEFVVRHLQAARIAVIEDGTAYGTDFADSFVS 185 +T ++TQ G + F++ GHD G + V+ L+A RIAVI+D T++G AD F+ Sbjct: 133 STGHQYTQQGYATAFRIMGHDDAGGNFTGAYAVKTLKAKRIAVIDDRTSFGAGLADQFIK 192 Query: 186 GVRRAGGLIVSREAISSKTSDFNPALNNVQKANADVIVFGGVVTQSALLARSMMRRDMNI 245 GV+ GG IV R+ ++ KT+DF+ L ++ AD++ FGG+ Q+A +AR M + +N Sbjct: 193 GVQANGGTIVDRQYVNDKTTDFSGVLTAIKGKRADLVFFGGLDAQAAPIARRMRQLGVNA 252 Query: 246 RLVGTGGTATGLFLQLAEGVQGNVWALETGVPRDRLPGWREFNDKMHSRFQGEITHYALF 305 L+G GG + FL LA V ALE G+P DR+PG + F+ + +RF+ I +A F Sbjct: 253 PLLGAGGFVSQTFLSLAGKDGDGVPALEPGLPLDRMPGGKAFDAQYQARFRAPIELHAPF 312 Query: 306 AYDAANVLVAAIQKAGSLDPKAVTIALHEIRYPGLTGILSFDANGALINPVYTIYRLDQG 365 AYDAA L+AA QKAG+ P + A+ EI PG+TG ++FD G L NP +TIY++ G Sbjct: 313 AYDAAATLIAAAQKAGTTQPAKLVAAVREIDRPGVTGEIAFDKEGNLKNPAFTIYQVRGG 372 Query: 366 KWSVEKML 373 KW+V +L Sbjct: 373 KWTVVDVL 380 >ref|YP_001584463.1| extracellular ligand-binding receptor [Burkholderia multivorans ATCC 17616] ref|YP_001948413.1| ABC-type branched-chain amino acid transport system periplasmic component [Burkholderia multivorans ATCC 17616] gb|ABX18171.1| Extracellular ligand-binding receptor [Burkholderia multivorans ATCC 17616] dbj|BAG45877.1| ABC-type branched-chain amino acid transport system periplasmic component [Burkholderia multivorans ATCC 17616] Length = 388 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 154/368 (41%), Positives = 224/368 (60%), Gaps = 6/368 (1%) Query: 9 ALFLAAAAHAQSIGANEQLVLVGVAAPLTSPRTESGI---AAVRLAFDEANRRAIRIGGK 65 AL + A AQS Q +L+G+AAPLT P G +LA D+AN + IGGK Sbjct: 16 ALVASVTAGAQSA---PQTILIGLAAPLTGPSARIGKDLQNGAQLAIDDANAKRPTIGGK 72 Query: 66 QLVFRLLVEDDKGDAMFAAPIAQYFIRSKVVGVIGHWNSGPSIAVAGLYSAAGIPQIPMA 125 +V++L+ DD+ D A +AQ + V+GV+GHWN+G S+ + +Y AGIPQI A Sbjct: 73 PVVYKLVAADDQSDPRTAVAVAQQLVDQHVIGVVGHWNTGCSVPASRVYRDAGIPQIAPA 132 Query: 126 TTSSRFTQDGLRSIFQVQGHDGVGAVRLAEFVVRHLQAARIAVIEDGTAYGTDFADSFVS 185 +T ++TQ G + F++ GHD G + V+ L+A RIAVI+D T++G AD F+ Sbjct: 133 STGHQYTQQGYATAFRIMGHDDAGGNFTGAYAVKTLKAKRIAVIDDRTSFGAGLADQFIK 192 Query: 186 GVRRAGGLIVSREAISSKTSDFNPALNNVQKANADVIVFGGVVTQSALLARSMMRRDMNI 245 GV+ GG IV R+ ++ KT+DF+ L ++ AD++ FGG+ Q+A +AR M + +N Sbjct: 193 GVQANGGTIVDRQYVNDKTTDFSGVLTAIKGKRADLVFFGGLDAQAAPIARRMRQLGVNA 252 Query: 246 RLVGTGGTATGLFLQLAEGVQGNVWALETGVPRDRLPGWREFNDKMHSRFQGEITHYALF 305 L+G GG + FL LA V ALE G+P +R+PG + F+ + SRF+ I +A F Sbjct: 253 PLLGAGGFVSQTFLSLAGKDGDGVTALEPGLPLERMPGGKAFDAQYQSRFRAPIELHAPF 312 Query: 306 AYDAANVLVAAIQKAGSLDPKAVTIALHEIRYPGLTGILSFDANGALINPVYTIYRLDQG 365 AYDAA L+AA QKAG+ P + A+ EI PG+TG ++FD G L NP +TIY++ G Sbjct: 313 AYDAAATLIAAAQKAGTTQPAKLVAAVREIDRPGVTGEIAFDKEGNLKNPAFTIYQVRGG 372 Query: 366 KWSVEKML 373 KW+V +L Sbjct: 373 KWTVVDVL 380 >ref|ZP_02377100.1| Extracellular ligand-binding receptor [Burkholderia ubonensis Bu] Length = 388 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 147/351 (41%), Positives = 212/351 (60%), Gaps = 3/351 (0%) Query: 26 QLVLVGVAAPLTSPRTESGI---AAVRLAFDEANRRAIRIGGKQLVFRLLVEDDKGDAMF 82 Q +L+G+AAPLT P G +LA D+AN + IGGK +V++L+ DD+ D Sbjct: 30 QTILIGLAAPLTGPSARIGKDLQNGAQLAIDDANAKHPSIGGKPVVYKLVAADDQSDPRT 89 Query: 83 AAPIAQYFIRSKVVGVIGHWNSGPSIAVAGLYSAAGIPQIPMATTSSRFTQDGLRSIFQV 142 A +AQ + VVGV+GHWN+G S+ + +Y AGI QI A+T ++TQ G + F++ Sbjct: 90 AVAVAQQLVDKHVVGVVGHWNTGCSVPASRVYRDAGIAQIAPASTGHQYTQQGYATAFRI 149 Query: 143 QGHDGVGAVRLAEFVVRHLQAARIAVIEDGTAYGTDFADSFVSGVRRAGGLIVSREAISS 202 GHD G + V+ L+A RIAVI+D T++G AD F+ GV +GG IV R+ ++ Sbjct: 150 MGHDDAGGNFTGAYAVKTLKAKRIAVIDDRTSFGAGLADQFIKGVEASGGAIVDRQYVND 209 Query: 203 KTSDFNPALNNVQKANADVIVFGGVVTQSALLARSMMRRDMNIRLVGTGGTATGLFLQLA 262 KT+DF+ L ++ AD++ FGG+ Q+A LAR M + +N L+G GG + FL LA Sbjct: 210 KTTDFSGVLTAIKGKRADLVFFGGLDAQAAPLARRMRQLGVNAPLLGAGGFVSQTFLSLA 269 Query: 263 EGVQGNVWALETGVPRDRLPGWREFNDKMHSRFQGEITHYALFAYDAANVLVAAIQKAGS 322 V ALE G+P R+PG F+ + SR+ I +A FAYDAA L+AA QKAG+ Sbjct: 270 GKDGEGVTALEPGLPLARMPGGSAFDAQYQSRYHAPIELHAPFAYDAAATLIAATQKAGT 329 Query: 323 LDPKAVTIALHEIRYPGLTGILSFDANGALINPVYTIYRLDQGKWSVEKML 373 P + A+ I PG+TG ++FD G L NP +TIY++ GKW+V +L Sbjct: 330 TQPAKLVAAVRAIDRPGVTGRIAFDGAGNLNNPAFTIYQVRGGKWTVVDVL 380