BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0404.p (418 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754472.1| peptidase dimerization [Collimonas fungivora... 610 e-172 ref|YP_004490587.1| peptidase dimerization domain-containing pro... 519 e-145 ref|YP_001562287.1| peptidase dimerisation domain-containing pro... 519 e-145 ref|YP_002983956.1| peptidase dimerisation domain-containing pro... 503 e-140 ref|YP_001892454.1| peptidase dimerisation domain protein [Ralst... 501 e-140 >ref|YP_004754472.1| peptidase dimerization [Collimonas fungivorans Ter331] gb|AEK63649.1| peptidase dimerization [Collimonas fungivorans Ter331] Length = 519 Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust. Identities = 290/399 (72%), Positives = 337/399 (84%), Gaps = 2/399 (0%) Query: 19 AACIAAAMLCSAPLQAAEVSVA-QTAAAAKGTFKEWVEAIAIPNDSIVAADIQRNTAWFE 77 AAC A A+ + L AAE +A Q AA+ +FKEW E +AIPNDS VAADIQRN AWFE Sbjct: 13 AAC-AMAIFSTPSLYAAESPIAPQVQNAAQASFKEWAEVLAIPNDSAVAADIQRNAAWFE 71 Query: 78 QAFQRRGFRTRQLANDGKPMLFAELPGNKAGATTVLFYAHLDGQAVTPSEWQQESPWKPT 137 QAFQRRGF TRQLAN+GKP+LFAE P G TVLFY H+DGQ V PSEWQQ+SPW P Sbjct: 72 QAFQRRGFHTRQLANNGKPLLFAEFPKGGPGLPTVLFYGHMDGQPVNPSEWQQKSPWTPV 131 Query: 138 LKQRNAAGQWEALPIEQLYGANPNPEWRLFGRAAADDKAPILMMLAAFDALKASGVTPSV 197 LKQRNAAGQWEA+P+++L+ + +PEWRLF RA+ADDKAPI+M+LAA DALKA G TP++ Sbjct: 132 LKQRNAAGQWEAMPLDRLFAKDVDPEWRLFARASADDKAPIMMLLAAIDALKAGGKTPAI 191 Query: 198 NVKIILDAEEEKGSPSLGKVIDQNQALLKADLLVVLDGPMHASNLPTLVFGNRGVAQATL 257 N+K+ILDAEEEKGSPSLG VI +NQ LLK+D+LVVLDGPMH SN PTLVFGNRG+ TL Sbjct: 192 NLKVILDAEEEKGSPSLGGVIKRNQDLLKSDMLVVLDGPMHPSNQPTLVFGNRGIVVGTL 251 Query: 258 KVFGPRQDSHSGHYGNYAANPAQTMARLLASMKDEDGRVTVAGYYDAVKLDDESRRVMRA 317 KV+GP+QDSHSGHYGNYAANPAQ MARLLASMKD++GRVTV GYYD+VKLD +S RVMRA Sbjct: 252 KVYGPKQDSHSGHYGNYAANPAQLMARLLASMKDDEGRVTVPGYYDSVKLDADSLRVMRA 311 Query: 318 VPDDEVALRKRLGIAQAEKVGQNYQEAMQYPTLNVRGMQAADVGAKARTIVPGEAIAELD 377 VPDDE ALR+RLGIA A+KVGQNYQEAMQYP+LNVRGMQ+ DVG KART+VP A+AELD Sbjct: 312 VPDDEAALRQRLGIAVADKVGQNYQEAMQYPSLNVRGMQSGDVGEKARTVVPAMAVAELD 371 Query: 378 LRTVPETDPQVLLGLVKAHIEKQGFHLVNGQPTDDERAR 416 LRTVPET+P L+ L+K +EKQGFHLVNG+P+D +RAR Sbjct: 372 LRTVPETEPAALVALLKGFVEKQGFHLVNGEPSDADRAR 410 >ref|YP_004490587.1| peptidase dimerization domain-containing protein [Delftia sp. Cs1-4] gb|AEF92232.1| peptidase dimerization domain protein [Delftia sp. Cs1-4] Length = 513 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 248/374 (66%), Positives = 307/374 (82%) Query: 42 TAAAAKGTFKEWVEAIAIPNDSIVAADIQRNTAWFEQAFQRRGFRTRQLANDGKPMLFAE 101 T AA+ + EWVE +A+PND+ V ADIQ+N AWF +AF+RRGF RQLAN KPML A Sbjct: 34 TRQAARASLHEWVEVLALPNDANVPADIQKNVAWFAKAFERRGFEVRQLANGDKPMLMAT 93 Query: 102 LPGNKAGATTVLFYAHLDGQAVTPSEWQQESPWKPTLKQRNAAGQWEALPIEQLYGANPN 161 LP G TVLFYAHLDGQAV P EWQQ SPW+ TLKQR G+W LP+EQLYG P+ Sbjct: 94 LPSAGPGRKTVLFYAHLDGQAVKPEEWQQASPWQATLKQRQPDGRWATLPLEQLYGEQPD 153 Query: 162 PEWRLFGRAAADDKAPILMMLAAFDALKASGVTPSVNVKIILDAEEEKGSPSLGKVIDQN 221 P+WR+F R+++DDKAPI+M+LAA DALKA G P V++K++LD+EEEKGSP+LG+VI +N Sbjct: 154 PQWRVFARSSSDDKAPIVMLLAALDALKAQGKQPGVDIKVLLDSEEEKGSPTLGRVIGEN 213 Query: 222 QALLKADLLVVLDGPMHASNLPTLVFGNRGVAQATLKVFGPRQDSHSGHYGNYAANPAQT 281 A LK+D +VVLDGPMHASN PTLVFGNRG+AQATL V+G Q+ HSGHYGNYAANPAQT Sbjct: 214 LAALKSDAMVVLDGPMHASNRPTLVFGNRGIAQATLTVYGASQELHSGHYGNYAANPAQT 273 Query: 282 MARLLASMKDEDGRVTVAGYYDAVKLDDESRRVMRAVPDDEVALRKRLGIAQAEKVGQNY 341 +ARLLASMK +DG+V + GYYD ++ D ++R VM+AVPDDE ALRKRLGIA+AE VG+NY Sbjct: 274 LARLLASMKGDDGKVLIQGYYDGIEFDAQAREVMQAVPDDEAALRKRLGIAKAETVGRNY 333 Query: 342 QEAMQYPTLNVRGMQAADVGAKARTIVPGEAIAELDLRTVPETDPQVLLGLVKAHIEKQG 401 QE+MQYP+LNVRG+Q+A+VG+KART+VP A+AE+D+RTVPET P+ L L++ HIE QG Sbjct: 334 QESMQYPSLNVRGLQSAEVGSKARTVVPSVAVAEIDMRTVPETPPERLEKLLRTHIEAQG 393 Query: 402 FHLVNGQPTDDERA 415 FHLV+G PT ++RA Sbjct: 394 FHLVDGPPTAEQRA 407 >ref|YP_001562287.1| peptidase dimerisation domain-containing protein [Delftia acidovorans SPH-1] gb|ABX33902.1| peptidase dimerisation domain protein [Delftia acidovorans SPH-1] Length = 513 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 250/374 (66%), Positives = 307/374 (82%) Query: 42 TAAAAKGTFKEWVEAIAIPNDSIVAADIQRNTAWFEQAFQRRGFRTRQLANDGKPMLFAE 101 T AA+ + EWVE +A+PND+ V ADIQ+N AWF +AF+RRGF RQLAN KPML A Sbjct: 34 TRQAARASLHEWVEVLALPNDANVPADIQKNVAWFAKAFERRGFEVRQLANGDKPMLMAT 93 Query: 102 LPGNKAGATTVLFYAHLDGQAVTPSEWQQESPWKPTLKQRNAAGQWEALPIEQLYGANPN 161 LP G TVLFYAHLDGQAV P EWQQ SPW+ TLKQR G+W ALP+EQLYG P+ Sbjct: 94 LPSAGPGRKTVLFYAHLDGQAVKPEEWQQASPWQATLKQRQPDGRWAALPLEQLYGEQPD 153 Query: 162 PEWRLFGRAAADDKAPILMMLAAFDALKASGVTPSVNVKIILDAEEEKGSPSLGKVIDQN 221 P+WR+F R+++DDKAPI+M+LAA DALKA G P V++K++LD+EEEKGSP+LG+VI +N Sbjct: 154 PQWRVFARSSSDDKAPIVMLLAALDALKAQGKQPGVDIKVLLDSEEEKGSPTLGRVIGEN 213 Query: 222 QALLKADLLVVLDGPMHASNLPTLVFGNRGVAQATLKVFGPRQDSHSGHYGNYAANPAQT 281 LK+D +VVLDGPMHASN PTLVFGNRG+AQATL V+G Q+ HSGHYGNYAANPAQT Sbjct: 214 LGALKSDAMVVLDGPMHASNRPTLVFGNRGIAQATLTVYGASQELHSGHYGNYAANPAQT 273 Query: 282 MARLLASMKDEDGRVTVAGYYDAVKLDDESRRVMRAVPDDEVALRKRLGIAQAEKVGQNY 341 +ARLLASMK +DG+V + GYYD ++ D ++R VM+AVPDDE ALRKRLGIA+AE VG+NY Sbjct: 274 LARLLASMKGDDGKVLIQGYYDGIEFDAQAREVMQAVPDDEAALRKRLGIAKAETVGRNY 333 Query: 342 QEAMQYPTLNVRGMQAADVGAKARTIVPGEAIAELDLRTVPETDPQVLLGLVKAHIEKQG 401 QEAMQYP+LNVRG+Q+A+VG+KART+VP A+AE+D+RTVPET PQ L L++AHIE QG Sbjct: 334 QEAMQYPSLNVRGLQSAEVGSKARTVVPSVAVAEIDMRTVPETPPQRLEKLLRAHIEAQG 393 Query: 402 FHLVNGQPTDDERA 415 FHLV+G T ++RA Sbjct: 394 FHLVDGPLTAEQRA 407 >ref|YP_002983956.1| peptidase dimerisation domain-containing protein [Ralstonia pickettii 12D] gb|ACS65284.1| peptidase dimerisation domain protein [Ralstonia pickettii 12D] Length = 544 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 238/397 (59%), Positives = 301/397 (75%), Gaps = 1/397 (0%) Query: 21 CIAAAMLCSAPLQ-AAEVSVAQTAAAAKGTFKEWVEAIAIPNDSIVAADIQRNTAWFEQA 79 + A ML + L AAE+S A A+ T++E+ + +++PND+IV D+++N W EQA Sbjct: 43 LVPALMLGATGLAGAAELSSADAERHAQATYREYFQLLSLPNDAIVPEDVRKNADWLEQA 102 Query: 80 FQRRGFRTRQLANDGKPMLFAELPGNKAGATTVLFYAHLDGQAVTPSEWQQESPWKPTLK 139 F++RGF T+QLAN+GKPML+AELP AG TVLFY HLDGQ V P++W Q+SPW P LK Sbjct: 103 FRKRGFTTKQLANNGKPMLYAELPNPDAGRKTVLFYMHLDGQPVIPAQWAQKSPWTPVLK 162 Query: 140 QRNAAGQWEALPIEQLYGANPNPEWRLFGRAAADDKAPILMMLAAFDALKASGVTPSVNV 199 + A G WE + QL+ +PEWR+FGR++ADDK PI+MMLAA DALKASG P+VNV Sbjct: 163 HKTAQGDWEEIDAAQLFSGPLDPEWRVFGRSSADDKGPIMMMLAAIDALKASGAQPAVNV 222 Query: 200 KIILDAEEEKGSPSLGKVIDQNQALLKADLLVVLDGPMHASNLPTLVFGNRGVAQATLKV 259 KIILD+EEEKGSPS+ KV+ N+ LL+ D +V+ DGPMHASNLPTLVFGNRG A+A L V Sbjct: 223 KIILDSEEEKGSPSISKVMQANRELLRCDAIVIHDGPMHASNLPTLVFGNRGAAEARLTV 282 Query: 260 FGPRQDSHSGHYGNYAANPAQTMARLLASMKDEDGRVTVAGYYDAVKLDDESRRVMRAVP 319 +G + HSGHYGNYA NPAQ +A LLASMK++ GRVTV GYYD VK+ + R++M AVP Sbjct: 283 YGAKVPLHSGHYGNYARNPAQQLANLLASMKNDAGRVTVPGYYDHVKISEADRKIMAAVP 342 Query: 320 DDEVALRKRLGIAQAEKVGQNYQEAMQYPTLNVRGMQAADVGAKARTIVPGEAIAELDLR 379 DD+ AL KRLGIA A+KVG NYQEAMQYP+LNVRGM +A VG K IVP +A+AELDLR Sbjct: 343 DDQAALNKRLGIAHADKVGANYQEAMQYPSLNVRGMASAAVGDKVANIVPDKAVAELDLR 402 Query: 380 TVPETDPQVLLGLVKAHIEKQGFHLVNGQPTDDERAR 416 T P++ L L++ HIE+QG+HLV PTD+ER+R Sbjct: 403 TTPDSSAAYLGKLIERHIERQGYHLVKNAPTDEERSR 439 >ref|YP_001892454.1| peptidase dimerisation domain protein [Ralstonia pickettii 12J] gb|ACD29027.1| peptidase dimerisation domain protein [Ralstonia pickettii 12J] Length = 497 Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust. Identities = 234/383 (61%), Positives = 295/383 (77%) Query: 34 AAEVSVAQTAAAAKGTFKEWVEAIAIPNDSIVAADIQRNTAWFEQAFQRRGFRTRQLAND 93 AAE+S A A+ T++E+ + +++PND+IV D+++N W EQAF++RGF T+QLAN+ Sbjct: 10 AAELSSADAERHAQATYREYFQLLSLPNDAIVPEDVRKNADWLEQAFRKRGFTTKQLANN 69 Query: 94 GKPMLFAELPGNKAGATTVLFYAHLDGQAVTPSEWQQESPWKPTLKQRNAAGQWEALPIE 153 GKPML+AELP AG TVLFY HLDGQ V P++W Q+SPW P LK + A G WE + Sbjct: 70 GKPMLYAELPNPDAGRKTVLFYMHLDGQPVIPAQWAQKSPWTPVLKHKTAQGDWEEIDAA 129 Query: 154 QLYGANPNPEWRLFGRAAADDKAPILMMLAAFDALKASGVTPSVNVKIILDAEEEKGSPS 213 QL+ +PEWR+FGR++ADDK PI+MMLAA DALKASG P+VNVKIILD+EEEKGSPS Sbjct: 130 QLFSGPLDPEWRVFGRSSADDKGPIMMMLAAIDALKASGAQPAVNVKIILDSEEEKGSPS 189 Query: 214 LGKVIDQNQALLKADLLVVLDGPMHASNLPTLVFGNRGVAQATLKVFGPRQDSHSGHYGN 273 + KV+ N+ LL+ D +V+ DGPMHASNLPTLVFGNRG A+A L V+G + HSGHYGN Sbjct: 190 ISKVMQANRELLRCDAIVIHDGPMHASNLPTLVFGNRGAAEARLTVYGAKVPLHSGHYGN 249 Query: 274 YAANPAQTMARLLASMKDEDGRVTVAGYYDAVKLDDESRRVMRAVPDDEVALRKRLGIAQ 333 YA NPAQ +A LLASMK++ GRVTV GYYD VK+ + R++M AVPDD+ AL KRLGIA Sbjct: 250 YARNPAQQLANLLASMKNDAGRVTVPGYYDHVKISEADRKIMAAVPDDQAALNKRLGIAH 309 Query: 334 AEKVGQNYQEAMQYPTLNVRGMQAADVGAKARTIVPGEAIAELDLRTVPETDPQVLLGLV 393 A+KVG NYQEAMQYP+LNVRGM +A VG K IVP +A+AELDLRT P++ L L+ Sbjct: 310 ADKVGANYQEAMQYPSLNVRGMASAAVGDKVANIVPDKAVAELDLRTTPDSSAAYLGKLI 369 Query: 394 KAHIEKQGFHLVNGQPTDDERAR 416 + HIE+QG+HLV PTD+ER+R Sbjct: 370 ERHIERQGYHLVKNAPTDEERSR 392