BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0403.p         (92 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004754472.1| peptidase dimerization [Collimonas fungivora...   157   3e-37
ref|YP_004490587.1| peptidase dimerization domain-containing pro...   136   1e-30
ref|YP_001562287.1| peptidase dimerisation domain-containing pro...   135   3e-30
ref|YP_004234933.1| beta-Ala-His dipeptidase [Acidovorax avenae ...   114   3e-24
ref|ZP_01102325.1| Peptidase M20 family protein [Congregibacter ...   112   1e-23

>ref|YP_004754472.1| peptidase dimerization [Collimonas fungivorans Ter331]
 gb|AEK63649.1| peptidase dimerization [Collimonas fungivorans Ter331]
          Length = 519

 Score =  157 bits (398), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/90 (82%), Positives = 81/90 (90%)

Query: 3   VRTDLASPIGKWLRGAFVKTYGKEPVQIRMMGGTVPTGAMVGALKIPFVIVPLVNADNNQ 62
           VRTDL +PIG WLR +  KTYGKEPVQIRMMGGTVPTGA+V ALK+PFVIVPLVNADNNQ
Sbjct: 429 VRTDLHAPIGNWLRRSLTKTYGKEPVQIRMMGGTVPTGALVDALKVPFVIVPLVNADNNQ 488

Query: 63  HSANENMRLGNYIDGVQSLTGILTEPFPAK 92
           HSANENMRLGNYI+GV SL GIL+EPF +K
Sbjct: 489 HSANENMRLGNYINGVNSLVGILSEPFGSK 518


>ref|YP_004490587.1| peptidase dimerization domain-containing protein [Delftia sp.
           Cs1-4]
 gb|AEF92232.1| peptidase dimerization domain protein [Delftia sp. Cs1-4]
          Length = 513

 Score =  136 bits (342), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 71/88 (80%)

Query: 2   AVRTDLASPIGKWLRGAFVKTYGKEPVQIRMMGGTVPTGAMVGALKIPFVIVPLVNADNN 61
           AVRT L +P+G+WLR    K +  +PVQIRMMGGTVPTGA V ALKIPFVIVPLVNADNN
Sbjct: 426 AVRTPLDAPVGQWLRKGMNKAWDSDPVQIRMMGGTVPTGAAVQALKIPFVIVPLVNADNN 485

Query: 62  QHSANENMRLGNYIDGVQSLTGILTEPF 89
           QHS +ENMRLGNY DGV SL  +L EPF
Sbjct: 486 QHSFDENMRLGNYFDGVHSLVHLLAEPF 513


>ref|YP_001562287.1| peptidase dimerisation domain-containing protein [Delftia
           acidovorans SPH-1]
 gb|ABX33902.1| peptidase dimerisation domain protein [Delftia acidovorans SPH-1]
          Length = 513

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 71/88 (80%)

Query: 2   AVRTDLASPIGKWLRGAFVKTYGKEPVQIRMMGGTVPTGAMVGALKIPFVIVPLVNADNN 61
           AVRT L +P+G+WLR    K +  +PVQIRMMGGTVPTGA V ALKIPFVI+PLVNADNN
Sbjct: 426 AVRTPLDAPVGQWLRKGMNKAWDSDPVQIRMMGGTVPTGAAVQALKIPFVILPLVNADNN 485

Query: 62  QHSANENMRLGNYIDGVQSLTGILTEPF 89
           QHS +ENMRLGNY DGV SL  +L EPF
Sbjct: 486 QHSFDENMRLGNYFDGVHSLVHLLAEPF 513


>ref|YP_004234933.1| beta-Ala-His dipeptidase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gb|ADX46366.1| Beta-Ala-His dipeptidase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 508

 Score =  114 bits (286), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 69/90 (76%), Gaps = 2/90 (2%)

Query: 2   AVRTDLASPIGKWLRGAFVKTYGKEP--VQIRMMGGTVPTGAMVGALKIPFVIVPLVNAD 59
           A  T + S +G+W   A   T+G +P  V+IRMMGGTVPT  +V  L +PFVIVPLVNAD
Sbjct: 419 AAGTPIDSAVGQWAYQAMAGTFGAQPGPVRIRMMGGTVPTAEIVKVLDVPFVIVPLVNAD 478

Query: 60  NNQHSANENMRLGNYIDGVQSLTGILTEPF 89
           NNQH++NENMR+GNYIDG++++ G+LT PF
Sbjct: 479 NNQHASNENMRMGNYIDGIRTVHGLLTRPF 508


>ref|ZP_01102325.1| Peptidase M20 family protein [Congregibacter litoralis KT71]
 gb|EAQ98039.1| Peptidase M20 family protein [Congregibacter litoralis KT71]
          Length = 499

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/88 (55%), Positives = 63/88 (71%)

Query: 2   AVRTDLASPIGKWLRGAFVKTYGKEPVQIRMMGGTVPTGAMVGALKIPFVIVPLVNADNN 61
           + RTD  S +G+WLR A  + + +EP+QIRM GG++P    V  L IP V VP VN DNN
Sbjct: 412 SFRTDFDSEVGRWLRRALQRAFEEEPIQIRMSGGSIPISPFVNTLGIPAVTVPTVNRDNN 471

Query: 62  QHSANENMRLGNYIDGVQSLTGILTEPF 89
           QHS NEN+RLGNY DG++++ GILTEP 
Sbjct: 472 QHSPNENLRLGNYRDGIRTMLGILTEPL 499