BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0401.p         (200 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002537265.1| conserved hypothetical protein [Ricinus comm...   170   9e-41
ref|YP_003773942.1| hypothetical protein Hsero_0515 [Herbaspiril...   168   4e-40

>ref|XP_002537265.1| conserved hypothetical protein [Ricinus communis]
 gb|EEF25117.1| conserved hypothetical protein [Ricinus communis]
          Length = 197

 Score =  170 bits (431), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 80/173 (46%), Positives = 119/173 (68%)

Query: 28  ACDRSVDEKLSAQASAEKSLEISPTLFATKFNRSVRDVLEDRKDDNAARMAPLYAIDVTQ 87
            CDR++D++L+   +AE +L ++P  FA +FN  + +VL D + +  A MA LY +D ++
Sbjct: 25  GCDRTIDKQLAEHTAAETTLGVTPKEFARRFNERLPEVLSDMQVEEPAHMANLYKLDPSR 84

Query: 88  LHKGGEKHTFQTQVGPAQTSLIGSLAKDGDLKTIGVLLASRTEGARDEFFLCAETVARIV 147
           LH G  ++  +T+VGPAQTSL+G+L K G+L+ +GVLL  R++GARDEF +CA++ AR  
Sbjct: 85  LHPGQYEYVLETKVGPAQTSLLGTLNKKGELRAVGVLLTDRSQGARDEFLICADSAARSF 144

Query: 148 TDSDKAKLPDQLKRLVNNAINNPGQRMTIAVGQRLLSAEIIQQGLMFQVEQSQ 200
             + + KL   + RL   A+NNPGQRMT  V  +LLS EI+ QGL+FQV+  Q
Sbjct: 145 ISTAQDKLLPLITRLTGIALNNPGQRMTEVVSDQLLSVEIVPQGLLFQVQPQQ 197


>ref|YP_003773942.1| hypothetical protein Hsero_0515 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62034.1| hypothetical protein Hsero_0515 [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score =  168 bits (426), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 76/173 (43%), Positives = 120/173 (69%)

Query: 28  ACDRSVDEKLSAQASAEKSLEISPTLFATKFNRSVRDVLEDRKDDNAARMAPLYAIDVTQ 87
            CDRS+D++L+A  +A+ +L ++P  FA +FN+ +RDVL + + D+   MA LY +D ++
Sbjct: 34  GCDRSIDQQLAAHEAAQTTLGVTPKEFAGRFNQRLRDVLTEMQVDDPEHMAHLYMLDASR 93

Query: 88  LHKGGEKHTFQTQVGPAQTSLIGSLAKDGDLKTIGVLLASRTEGARDEFFLCAETVARIV 147
           LH G  ++   TQVGP+QT++IG+L K G L+ +GV+L ++T GAR+EF +CA + AR  
Sbjct: 94  LHPGQYEYVLDTQVGPSQTTIIGTLNKSGQLRNVGVMLTNKTPGAREEFLVCAASAARSF 153

Query: 148 TDSDKAKLPDQLKRLVNNAINNPGQRMTIAVGQRLLSAEIIQQGLMFQVEQSQ 200
            D+ + KL   + RL   A++NPGQRM+  V  +LLS E++ QG++FQV+  Q
Sbjct: 154 VDAGQEKLLPLITRLTTVALDNPGQRMSEVVADQLLSVELVPQGVLFQVQPRQ 206