BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0396.p (363 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_862534.1| hypothetical protein pADP-1_p097 [Pseudomonas s... 406 e-111 ref|YP_426989.1| basic membrane lipoprotein [Rhodospirillum rubr... 405 e-111 gb|AEO48421.1| basic membrane lipoprotein [Rhodospirillum rubrum... 405 e-111 ref|YP_003262761.1| basic membrane lipoprotein [Halothiobacillus... 401 e-109 ref|YP_003449291.1| simple sugar transport system substrate-bind... 393 e-107 >ref|NP_862534.1| hypothetical protein pADP-1_p097 [Pseudomonas sp. ADP] gb|AAK50328.1|U66917_97 hypothetical protein [Pseudomonas sp. ADP] Length = 360 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 179/363 (49%), Positives = 260/363 (71%), Gaps = 4/363 (1%) Query: 1 MKRRQFLLASGATALSALSTLSAPTIAATSTPRLKIGFIYPGPVADIGWSFQHDLGRRML 60 M RR+ + + AL+ T SA A P LK+ F+Y GPV+D G+++ HD GR + Sbjct: 1 MNRRKLITLA---ALAVPFTFSAALPAQAQEP-LKVAFVYAGPVSDAGYTYAHDQGRLAM 56 Query: 61 EREFGTRIETVFVERVPESPEAERVMRQLIDDGCKMIFATSFGFMNPVIKVAAEYPDVIF 120 E+ G ++++ +VE VPE +AERV+R+L DG K+IF TSFGFMNP +VA +P+V+F Sbjct: 57 EKNLGAKVKSSYVENVPEGADAERVIRKLAADGNKLIFTTSFGFMNPTERVAKAFPNVVF 116 Query: 121 EHCSGYKSARNVGIYQTRFYEGAYLLGTIAGRMTKTNTLGYVAPIPIPEVIRNLDAFVLG 180 EH +G K A+N+G+Y++R YEG YL G +A +MTKT +G+V P+PEVIRN++A+ LG Sbjct: 117 EHATGVKLAKNLGVYESRQYEGTYLQGVLAAKMTKTGVIGFVGSFPVPEVIRNINAYTLG 176 Query: 181 ARSVNPKVTAKVVWINSWYDPGLERDAAQTLVAQGVDTLYQNTDSPAPVQVAQSRKLYAF 240 A+SVNPK+ KV+W+++WYDP ER AA+TL+AQG D L QNT+SPA +QVAQ + YAF Sbjct: 177 AQSVNPKIKTKVIWVSTWYDPAKERQAAETLIAQGADVLTQNTNSPATLQVAQEKGKYAF 236 Query: 241 GQDSDMTRFGPDAHLTGNVLNWGVYYVHKVRQVLEGKWKSEDTKWGMKEGIVQLAPLNPA 300 G D+DM++F P AHLT ++ NWG +Y + V+ G WKSE+ WGM EG+V++APLN A Sbjct: 237 GCDADMSKFAPKAHLTASISNWGDFYTKTAQAVMAGTWKSEEVHWGMAEGMVKMAPLNAA 296 Query: 301 LPKDVVALVEQRRKAIIAGTLQPFAGPVNNQAGQLQVAAGKTVPESELWTMKWYVEGIQG 360 +P D L E+++ A+++G ++PF GP+ +Q+G ++VAAG +P + L M WYV+G++G Sbjct: 297 VPPDAAKLFEEKKAAMVSGKIKPFQGPLKDQSGAVKVAAGSDLPLASLKGMNWYVQGVEG 356 Query: 361 KQP 363 P Sbjct: 357 TIP 359 >ref|YP_426989.1| basic membrane lipoprotein [Rhodospirillum rubrum ATCC 11170] gb|ABC22702.1| Basic membrane lipoprotein [Rhodospirillum rubrum ATCC 11170] Length = 359 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 185/329 (56%), Positives = 239/329 (72%) Query: 35 KIGFIYPGPVADIGWSFQHDLGRRMLEREFGTRIETVFVERVPESPEAERVMRQLIDDGC 94 K+GFIY GPV D GWS QHD GR+ LE+ FG +++T FVE V E +AERV+RQ G Sbjct: 30 KVGFIYVGPVGDFGWSHQHDQGRQALEKAFGDKVKTSFVESVQEGADAERVVRQFAAGGY 89 Query: 95 KMIFATSFGFMNPVIKVAAEYPDVIFEHCSGYKSARNVGIYQTRFYEGAYLLGTIAGRMT 154 ++F TSFGFMNP +KVA ++P V FEH +GYK + NV Y RFYEG Y++G IAG T Sbjct: 90 DLVFTTSFGFMNPTLKVAQQFPKVKFEHATGYKRSANVATYAARFYEGRYVIGVIAGLTT 149 Query: 155 KTNTLGYVAPIPIPEVIRNLDAFVLGARSVNPKVTAKVVWINSWYDPGLERDAAQTLVAQ 214 K+ +GYVA PIPEV+ ++AF G SVNP+ KV+W+NSWYDPG ER+AA+TL+AQ Sbjct: 150 KSKVVGYVASFPIPEVVSGINAFARGLHSVNPEAQVKVIWVNSWYDPGKEREAAETLIAQ 209 Query: 215 GVDTLYQNTDSPAPVQVAQSRKLYAFGQDSDMTRFGPDAHLTGNVLNWGVYYVHKVRQVL 274 G D L Q+TDSPAPVQVA+ + ++AFGQ SDM+RFGP A LT V NW YY+ +V+ V+ Sbjct: 210 GADVLSQHTDSPAPVQVAEEKGIFAFGQASDMSRFGPHAQLTAIVDNWNEYYIDRVKAVM 269 Query: 275 EGKWKSEDTKWGMKEGIVQLAPLNPALPKDVVALVEQRRKAIIAGTLQPFAGPVNNQAGQ 334 +G WK+EDT G+ G+V LAP N ALP DVV E RKAI+ G+L PFAGP+ NQAGQ Sbjct: 270 DGTWKAEDTWGGLAAGMVHLAPYNAALPADVVEKAEAVRKAIVDGSLHPFAGPLKNQAGQ 329 Query: 335 LQVAAGKTVPESELWTMKWYVEGIQGKQP 363 V AG+ + + ++ +M WY+EG+QG+ P Sbjct: 330 EIVPAGQVLADDKILSMDWYIEGVQGQLP 358 >gb|AEO48421.1| basic membrane lipoprotein [Rhodospirillum rubrum F11] Length = 352 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 185/329 (56%), Positives = 239/329 (72%) Query: 35 KIGFIYPGPVADIGWSFQHDLGRRMLEREFGTRIETVFVERVPESPEAERVMRQLIDDGC 94 K+GFIY GPV D GWS QHD GR+ LE+ FG +++T FVE V E +AERV+RQ G Sbjct: 23 KVGFIYVGPVGDFGWSHQHDQGRQALEKAFGDKVKTSFVESVQEGADAERVVRQFAAGGY 82 Query: 95 KMIFATSFGFMNPVIKVAAEYPDVIFEHCSGYKSARNVGIYQTRFYEGAYLLGTIAGRMT 154 ++F TSFGFMNP +KVA ++P V FEH +GYK + NV Y RFYEG Y++G IAG T Sbjct: 83 DLVFTTSFGFMNPTLKVAQQFPKVKFEHATGYKRSANVATYAARFYEGRYVIGVIAGLTT 142 Query: 155 KTNTLGYVAPIPIPEVIRNLDAFVLGARSVNPKVTAKVVWINSWYDPGLERDAAQTLVAQ 214 K+ +GYVA PIPEV+ ++AF G SVNP+ KV+W+NSWYDPG ER+AA+TL+AQ Sbjct: 143 KSKVVGYVASFPIPEVVSGINAFARGLHSVNPEAQVKVIWVNSWYDPGKEREAAETLIAQ 202 Query: 215 GVDTLYQNTDSPAPVQVAQSRKLYAFGQDSDMTRFGPDAHLTGNVLNWGVYYVHKVRQVL 274 G D L Q+TDSPAPVQVA+ + ++AFGQ SDM+RFGP A LT V NW YY+ +V+ V+ Sbjct: 203 GADVLSQHTDSPAPVQVAEEKGIFAFGQASDMSRFGPHAQLTAIVDNWNEYYIDRVKAVM 262 Query: 275 EGKWKSEDTKWGMKEGIVQLAPLNPALPKDVVALVEQRRKAIIAGTLQPFAGPVNNQAGQ 334 +G WK+EDT G+ G+V LAP N ALP DVV E RKAI+ G+L PFAGP+ NQAGQ Sbjct: 263 DGTWKAEDTWGGLAAGMVHLAPYNAALPADVVEKAEAVRKAIVDGSLHPFAGPLKNQAGQ 322 Query: 335 LQVAAGKTVPESELWTMKWYVEGIQGKQP 363 V AG+ + + ++ +M WY+EG+QG+ P Sbjct: 323 EIVPAGQVLADDKILSMDWYIEGVQGQLP 351 >ref|YP_003262761.1| basic membrane lipoprotein [Halothiobacillus neapolitanus c2] gb|ACX95714.1| basic membrane lipoprotein [Halothiobacillus neapolitanus c2] Length = 356 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 177/330 (53%), Positives = 246/330 (74%) Query: 34 LKIGFIYPGPVADIGWSFQHDLGRRMLEREFGTRIETVFVERVPESPEAERVMRQLIDDG 93 +K+GF+Y GPV D GW++ HD GR +++ G ++++ FVE VPES +AERV+RQL DG Sbjct: 26 IKVGFVYVGPVGDGGWTYAHDQGRLAMKKALGDKVKSTFVENVPESSDAERVIRQLAADG 85 Query: 94 CKMIFATSFGFMNPVIKVAAEYPDVIFEHCSGYKSARNVGIYQTRFYEGAYLLGTIAGRM 153 K+IF TSFGFMNP +KVA +P+ FEH +GYK A+NVGIYQ R +EGAY+LG +AG M Sbjct: 86 NKIIFTTSFGFMNPTLKVAKAFPNTYFEHATGYKMAKNVGIYQARSWEGAYMLGVLAGEM 145 Query: 154 TKTNTLGYVAPIPIPEVIRNLDAFVLGARSVNPKVTAKVVWINSWYDPGLERDAAQTLVA 213 TK+N LG+V P+PEV+RN++A+ LGA+SVNPK+ KV+W++SWYDP ER AA+T++A Sbjct: 146 TKSNILGFVGSYPVPEVVRNINAYTLGAQSVNPKIKTKVIWVSSWYDPARERQAAETMIA 205 Query: 214 QGVDTLYQNTDSPAPVQVAQSRKLYAFGQDSDMTRFGPDAHLTGNVLNWGVYYVHKVRQV 273 QG D L QNTDSPA VQ A+ + +YAFG DSDM+++GP A LT + LNW YY +V++V Sbjct: 206 QGADVLAQNTDSPAVVQTAEEKGVYAFGWDSDMSKYGPKAQLTASTLNWSKYYTMEVKKV 265 Query: 274 LEGKWKSEDTKWGMKEGIVQLAPLNPALPKDVVALVEQRRKAIIAGTLQPFAGPVNNQAG 333 L+G WK ++T WG+KEG+V L PL+ +P+ V + +AII GTL PF GP+ NQ G Sbjct: 266 LDGTWKPDNTLWGIKEGMVVLTPLHSNVPEKVAKDFHAKEQAIIDGTLVPFTGPIVNQEG 325 Query: 334 QLQVAAGKTVPESELWTMKWYVEGIQGKQP 363 + V AG+ +P +L ++ +YV+G++G P Sbjct: 326 KTVVPAGEKMPLDQLLSINFYVKGVEGTIP 355 >ref|YP_003449291.1| simple sugar transport system substrate-binding protein [Azospirillum sp. B510] dbj|BAI72747.1| simple sugar transport system substrate-binding protein [Azospirillum sp. B510] Length = 365 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 184/352 (52%), Positives = 243/352 (69%), Gaps = 3/352 (0%) Query: 12 ATALSALSTLSAPTIAATSTPRLKIGFIYPGPVADIGWSFQHDLGRRMLEREFGTRIETV 71 A A ALST +A +LK+GF+Y GPV+D G+S+QHD GR +E+ G ++ T Sbjct: 16 AGAAIALSTGMGSVLA---QEKLKVGFVYVGPVSDHGYSYQHDQGRLAVEKALGDKVTTT 72 Query: 72 FVERVPESPEAERVMRQLIDDGCKMIFATSFGFMNPVIKVAAEYPDVIFEHCSGYKSARN 131 FVE VPE +AERV+ QL G K+IF TSFGFMNP +KVA +PDV FEH +GYK A N Sbjct: 73 FVENVPEGADAERVIEQLAASGHKLIFTTSFGFMNPTLKVAQRHPDVKFEHATGYKRAAN 132 Query: 132 VGIYQTRFYEGAYLLGTIAGRMTKTNTLGYVAPIPIPEVIRNLDAFVLGARSVNPKVTAK 191 V Y RFYEG ++G IAG+MTK+N +GY+ PIPEV+ ++AF + R NPK + Sbjct: 133 VATYSGRFYEGRTVVGAIAGKMTKSNIIGYIGSYPIPEVVGGINAFTIALREQNPKAEVR 192 Query: 192 VVWINSWYDPGLERDAAQTLVAQGVDTLYQNTDSPAPVQVAQSRKLYAFGQDSDMTRFGP 251 VVW+NSWYDPG E +AA+ L+ QG D + Q+TDSPAP+Q AQ R L++ GQ SDMTRFGP Sbjct: 193 VVWVNSWYDPGKEAEAAKALIDQGADIIVQHTDSPAPIQTAQERGLWSVGQSSDMTRFGP 252 Query: 252 DAHLTGNVLNWGVYYVHKVRQVLEGKWKSEDTKWGMKEGIVQLAPLNPALPKDVVALVEQ 311 +HLT V +W YYV +V+ VL+G WK DT G+K G+V+LAP NPA+P +VV L EQ Sbjct: 253 KSHLTAIVEDWNGYYVDRVKAVLDGSWKPIDTWGGIKTGMVELAPYNPAIPAEVVTLAEQ 312 Query: 312 RRKAIIAGTLQPFAGPVNNQAGQLQVAAGKTVPESELWTMKWYVEGIQGKQP 363 + I++G F GPV +Q+G++ + GKT + ++ M WYVEG+QGK P Sbjct: 313 IKADIVSGKRHSFQGPVKDQSGKIVIPEGKTATDEQILKMDWYVEGVQGKVP 364