BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0395.p (217 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08405043.1| GntR family transcriptional regulator [Hylemo... 212 3e-53 ref|ZP_06838909.1| transcriptional regulator, GntR family [Burkh... 210 1e-52 ref|YP_547903.1| GntR family transcriptional regulator [Polaromo... 208 4e-52 ref|YP_003609120.1| GntR family transcriptional regulator [Burkh... 207 1e-51 ref|YP_001888983.1| GntR family transcriptional regulator [Burkh... 206 2e-51 >ref|ZP_08405043.1| GntR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gb|EGI77664.1| GntR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 277 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 105/208 (50%), Positives = 145/208 (69%) Query: 8 EPSETLDQGVYEAIFNGVMHGRLKPGTRLQEASLCEQFGVSRTVVRQALRRLSEAQIVEI 67 E S ++ +Y+A+F+ VM RLKPGT+L EA LCE F VSR+VVR+ L++L+ IV++ Sbjct: 54 EDSADIEARIYQAVFDSVMSQRLKPGTKLPEAPLCELFQVSRSVVRKVLQKLAHDHIVQL 113 Query: 68 VANKGAAVATPGPRETRDVFAARRAIEGAIVREAARRIEHGDIERLKQRLRAEHDALHEQ 127 N+GA VA P ETR +F ARRA+E A+VR A R D++ L+++LRAEH+A+H Sbjct: 114 RPNRGAIVAVPTREETRQIFEARRALEAAVVRLVAERASARDLKGLREQLRAEHEAMHRF 173 Query: 128 DHPRWVALAGGFHLALAELSGNAVLQRMLTELMTRCSLIVALYETPGEASCEHDEHARLV 187 D P W LA +HL LAELSGN +LQR L E+++RCSLIVA+++ PG A+CEHDEH R+V Sbjct: 174 DQPAWARLASAYHLRLAELSGNDILQRYLAEIVSRCSLIVAVHQPPGNAACEHDEHERIV 233 Query: 188 ELLSLRDGNAAADEMERHLLALEARLQL 215 + ++ D A M++HL LE L L Sbjct: 234 DCIAQGDAEGAVKLMDQHLRDLEQHLML 261 >ref|ZP_06838909.1| transcriptional regulator, GntR family [Burkholderia sp. Ch1-1] gb|EFG73355.1| transcriptional regulator, GntR family [Burkholderia sp. Ch1-1] Length = 244 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 101/202 (50%), Positives = 138/202 (68%) Query: 13 LDQGVYEAIFNGVMHGRLKPGTRLQEASLCEQFGVSRTVVRQALRRLSEAQIVEIVANKG 72 LD +Y++IF+GV++ RL PGT+L E LC+ FGV R VVR+ L +L+ IV + NKG Sbjct: 20 LDARIYQSIFDGVLNHRLTPGTKLPEPELCQLFGVGRAVVRRVLEKLAYDGIVVLRPNKG 79 Query: 73 AAVATPGPRETRDVFAARRAIEGAIVREAARRIEHGDIERLKQRLRAEHDALHEQDHPRW 132 A +A P P ETR++F ARR++E +V A +R GDI+ L+Q+L +EHDA+H D P W Sbjct: 80 AVIAEPTPEETREIFEARRSVERMLVELAVQRANAGDIKALRQQLASEHDAMHRFDQPSW 139 Query: 133 VALAGGFHLALAELSGNAVLQRMLTELMTRCSLIVALYETPGEASCEHDEHARLVELLSL 192 LA GFH+ +A L+GN++LQ L EL++RCSLIV +YE PG A CEH EHA +V+ + Sbjct: 140 ATLASGFHMRIAALAGNSILQNYLKELVSRCSLIVGVYEPPGHAPCEHAEHAAIVDCIEA 199 Query: 193 RDGNAAADEMERHLLALEARLQ 214 RD A ME HL LE R++ Sbjct: 200 RDAAGAMAHMEAHLRDLEERIE 221 >ref|YP_547903.1| GntR family transcriptional regulator [Polaromonas sp. JS666] gb|ABE43005.1| transcriptional regulator, GntR family [Polaromonas sp. JS666] Length = 248 Score = 208 bits (530), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 109/206 (52%), Positives = 139/206 (67%), Gaps = 1/206 (0%) Query: 10 SETLDQGVYEAIFNGVMHGRLKPGTRLQEASLCEQFGVSRTVVRQALRRLSEAQIVEIVA 69 SET + +Y ++F+ VM+ R+ PGT+L E +LCE F V+R VR+ L+RL+ IV++ Sbjct: 28 SET-ESRIYHSVFDSVMNQRIAPGTKLPEQALCELFSVNRATVRKVLQRLAHDHIVDLRP 86 Query: 70 NKGAAVATPGPRETRDVFAARRAIEGAIVREAARRIEHGDIERLKQRLRAEHDALHEQDH 129 N+GA VA P P ETR +F ARR +E AIV A+RI +I L+++LR EH ALH D Sbjct: 87 NRGAVVAAPTPEETRQIFQARRLLEAAIVPLVAQRITKAEILLLRKQLRDEHAALHRADQ 146 Query: 130 PRWVALAGGFHLALAELSGNAVLQRMLTELMTRCSLIVALYETPGEASCEHDEHARLVEL 189 P W LA FHL LAELSGNAVL L EL++RCSLIVALYE PG A+CEHDEHAR+V+ Sbjct: 147 PAWARLASTFHLRLAELSGNAVLHGYLHELVSRCSLIVALYEPPGNAACEHDEHARIVDY 206 Query: 190 LSLRDGNAAADEMERHLLALEARLQL 215 L + A M HLL LE R+ L Sbjct: 207 LENGEPAKAVRVMNEHLLDLERRICL 232 >ref|YP_003609120.1| GntR family transcriptional regulator [Burkholderia sp. CCGE1002] gb|ADG19609.1| transcriptional regulator, GntR family [Burkholderia sp. CCGE1002] Length = 251 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 99/198 (50%), Positives = 135/198 (68%) Query: 17 VYEAIFNGVMHGRLKPGTRLQEASLCEQFGVSRTVVRQALRRLSEAQIVEIVANKGAAVA 76 +Y++IF+GVM+ RL PGT+L E LC+ FGV R VVR+ L +L+ IV + NKGA +A Sbjct: 24 IYQSIFDGVMNHRLIPGTKLPEPELCQLFGVGRAVVRRVLEKLAYDGIVVLRPNKGAVIA 83 Query: 77 TPGPRETRDVFAARRAIEGAIVREAARRIEHGDIERLKQRLRAEHDALHEQDHPRWVALA 136 P P ETR++F ARR++E +V A +R DI+ L+Q+L +EHDA+H D P W LA Sbjct: 84 EPSPEETREIFEARRSVERMLVELAVQRASATDIKALRQQLASEHDAMHRYDQPSWATLA 143 Query: 137 GGFHLALAELSGNAVLQRMLTELMTRCSLIVALYETPGEASCEHDEHARLVELLSLRDGN 196 GFH+ +A L+GN++LQ L EL++RCSLIV +YE PG A CEH EHA +V+ + RD Sbjct: 144 SGFHMRIAALAGNSILQNYLKELVSRCSLIVGVYEPPGHAPCEHAEHAAIVDCIEARDSA 203 Query: 197 AAADEMERHLLALEARLQ 214 A ME HL LE R++ Sbjct: 204 GAMGHMEAHLRDLEERIE 221 >ref|YP_001888983.1| GntR family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD19613.1| transcriptional regulator, GntR family [Burkholderia phytofirmans PsJN] Length = 250 Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 100/209 (47%), Positives = 139/209 (66%) Query: 6 PSEPSETLDQGVYEAIFNGVMHGRLKPGTRLQEASLCEQFGVSRTVVRQALRRLSEAQIV 65 P + LD +Y++IF+GV++ RL PGT+L E LC+ FGV R VVR+ L +L+ IV Sbjct: 13 PLKDDADLDTRIYQSIFDGVLNHRLTPGTKLPEPELCQLFGVGRAVVRRVLEKLAYDGIV 72 Query: 66 EIVANKGAAVATPGPRETRDVFAARRAIEGAIVREAARRIEHGDIERLKQRLRAEHDALH 125 + NKGA +A P P ETR++F ARR++E +V A +R DI+ L+Q+L +EH+A+H Sbjct: 73 VLRPNKGAVIAEPTPEETREIFEARRSVERMLVELAVQRANAKDIKALRQQLASEHEAMH 132 Query: 126 EQDHPRWVALAGGFHLALAELSGNAVLQRMLTELMTRCSLIVALYETPGEASCEHDEHAR 185 D P W LA GFH+ +A L+GN++LQ L EL++RCSLIV +YE PG A CEH EHA Sbjct: 133 RFDQPSWATLASGFHMRIAALAGNSILQNYLKELVSRCSLIVGVYEPPGHAPCEHAEHAA 192 Query: 186 LVELLSLRDGNAAADEMERHLLALEARLQ 214 +V+ + RD A ME HL LE R++ Sbjct: 193 IVDCIEARDAAGAMAHMEAHLRDLEERIE 221