BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0380.p (232 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001354594.1| transcriptional regulator [Janthinobacterium... 338 4e-91 ref|YP_003773948.1| repressor transcription regulator protein [H... 325 4e-87 ref|YP_003604073.1| hypothetical protein [Burkholderia sp. CCGE1... 255 4e-66 ref|ZP_02882561.1| Helix-turn-helix type 11 domain protein [Burk... 255 5e-66 ref|ZP_03270981.1| Helix-turn-helix type 11 domain protein [Burk... 254 1e-65 >ref|YP_001354594.1| transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR89852.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 338 bits (867), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 172/225 (76%), Positives = 195/225 (86%), Gaps = 1/225 (0%) Query: 1 MRRADRLFQITQYLRGRRLTTARQLAEWLSVSERTVYRDIRDLSLSGVPVQGEAGVGYRI 60 MRRA+RLFQI QYLRGRRLTTA QL+EWL VSERT+YRDIRDLSLSGVP++GEAGVGYR+ Sbjct: 1 MRRAERLFQIAQYLRGRRLTTALQLSEWLYVSERTIYRDIRDLSLSGVPIEGEAGVGYRV 60 Query: 61 NKTGFDLPPLMFSPDEIDALVIGMRMVQAWGGPQLAASAAASLAKIVLALPKDKRDFVEN 120 K GFDL PLMFS DEI+ALV GMRMVQAWGGPQLAAS AA+LAKI LALP++KRDFVE Sbjct: 61 -KAGFDLQPLMFSSDEIEALVAGMRMVQAWGGPQLAASGAAALAKITLALPREKRDFVEA 119 Query: 121 TALFAPSFHIDQAHGERLEEIRQAIGKRCTLQLDYVDARGQATQRIVWPLALYFWGGGWS 180 T LFAP FHI+ HGERLE IRQAIGK+ L+LDY+DA+ QA+ R +WPLALYFWG GWS Sbjct: 120 TPLFAPDFHIEACHGERLENIRQAIGKQNKLRLDYIDAKQQASCRTIWPLALYFWGSGWS 179 Query: 181 IAAWCETRSDFRSFRLDRVRAMMPAHTYPDESGKRLADFVRAVRK 225 IAAWCETRSDFRSFRLDRV+A+ Y SG+RLADFVRA+++ Sbjct: 180 IAAWCETRSDFRSFRLDRVQALADGGPYAGVSGRRLADFVRAMKR 224 >ref|YP_003773948.1| repressor transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62040.1| repressor transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 262 Score = 325 bits (832), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 172/232 (74%), Positives = 193/232 (83%), Gaps = 1/232 (0%) Query: 1 MRRADRLFQITQYLRGRRLTTARQLAEWLSVSERTVYRDIRDLSLSGVPVQGEAGVGYRI 60 MRRADRLFQITQYLRGRRLTTARQLA WLSVSERT+YRDIRDLSLSGVPV GEAGVGYRI Sbjct: 28 MRRADRLFQITQYLRGRRLTTARQLATWLSVSERTIYRDIRDLSLSGVPVDGEAGVGYRI 87 Query: 61 NKTGFDLPPLMFSPDEIDALVIGMRMVQAWGGPQLAASAAASLAKIVLALPKDKRDFVEN 120 K G+DLPPLMF+ DEIDALVIGMRMVQAWGGPQL ASAA++LAK+VLALPK+KRDFVE Sbjct: 88 -KPGYDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKRDFVEA 146 Query: 121 TALFAPSFHIDQAHGERLEEIRQAIGKRCTLQLDYVDARGQATQRIVWPLALYFWGGGWS 180 T LFAP+ + GERLE IRQAIG R L LDY DA+ +A+QR+VWPLAL F+GG W Sbjct: 147 TPLFAPAVPDECGQGERLEAIRQAIGSRHKLLLDYSDAQQRASQRVVWPLALAFFGGTWL 206 Query: 181 IAAWCETRSDFRSFRLDRVRAMMPAHTYPDESGKRLADFVRAVRKSQYQDSA 232 +AAWCE R DFRSFRLDRV+ M YPD +G+RL DFVRA+++ Q A Sbjct: 207 LAAWCEAREDFRSFRLDRVQQMSEQGHYPDRNGRRLPDFVRAMQRQVRQARA 258 >ref|YP_003604073.1| hypothetical protein [Burkholderia sp. CCGE1002] gb|ADG14562.1| Helix-turn-helix type 11 domain protein [Burkholderia sp. CCGE1002] Length = 247 Score = 255 bits (651), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 120/220 (54%), Positives = 162/220 (73%), Gaps = 1/220 (0%) Query: 2 RRADRLFQITQYLRGRRLTTARQLAEWLSVSERTVYRDIRDLSLSGVPVQGEAGVGYRIN 61 RRADRLFQI + LRGRRLTTA+QLA+WL++S RTVYRD+RDL LSGVP++GEAG+GYR++ Sbjct: 21 RRADRLFQIAELLRGRRLTTAQQLADWLNISLRTVYRDVRDLQLSGVPIEGEAGIGYRLS 80 Query: 62 KTGFDLPPLMFSPDEIDALVIGMRMVQAWGGPQLAASAAASLAKIVLALPKDKRDFVENT 121 ++ LPPL F+ DE+ AL G RM+++WGG A+ A +LAKI A+P DKR +E Sbjct: 81 RSA-SLPPLTFTADELAALAAGARMLESWGGAGFASGARGALAKIASAMPADKRAALERL 139 Query: 122 ALFAPSFHIDQAHGERLEEIRQAIGKRCTLQLDYVDARGQATQRIVWPLALYFWGGGWSI 181 A+FAPSFHI +L+ + +AI R ++ Y DA G T+R VWPLAL +WG W++ Sbjct: 140 AIFAPSFHIKAEFSTQLDTLHRAIDMRQVVRFAYTDANGADTERRVWPLALAYWGARWTL 199 Query: 182 AAWCETRSDFRSFRLDRVRAMMPAHTYPDESGKRLADFVR 221 AWCE R DFR+F L+++R + TYPD++G+RLAD +R Sbjct: 200 GAWCELRGDFRNFGLEKMRDLTVLETYPDQAGRRLADLLR 239 >ref|ZP_02882561.1| Helix-turn-helix type 11 domain protein [Burkholderia graminis C4D1M] gb|EDT11764.1| Helix-turn-helix type 11 domain protein [Burkholderia graminis C4D1M] Length = 248 Score = 255 bits (651), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 121/228 (53%), Positives = 162/228 (71%), Gaps = 1/228 (0%) Query: 2 RRADRLFQITQYLRGRRLTTARQLAEWLSVSERTVYRDIRDLSLSGVPVQGEAGVGYRIN 61 RRADRLFQI + LRGRRLTTA+QLA+WL++S RTVYRD+RDL LSGVP++GEAG+GYR++ Sbjct: 21 RRADRLFQIAELLRGRRLTTAQQLADWLNISLRTVYRDVRDLQLSGVPIEGEAGIGYRLS 80 Query: 62 KTGFDLPPLMFSPDEIDALVIGMRMVQAWGGPQLAASAAASLAKIVLALPKDKRDFVENT 121 ++ LPPL F+ DE+ AL G RM+++WGG A+ A +LAKI A+P DKR +E Sbjct: 81 RSA-SLPPLTFTADELAALAAGARMLESWGGAGFASGARGALAKIASAMPADKRASLERL 139 Query: 122 ALFAPSFHIDQAHGERLEEIRQAIGKRCTLQLDYVDARGQATQRIVWPLALYFWGGGWSI 181 A+FAPSFHI +L+ + +AI R + Y DA G AT+R VWPLAL +WG W++ Sbjct: 140 AIFAPSFHIKSDFSTQLDTLHRAIDARHVVSFAYTDANGAATERRVWPLALAYWGARWTL 199 Query: 182 AAWCETRSDFRSFRLDRVRAMMPAHTYPDESGKRLADFVRAVRKSQYQ 229 AWCE R DFR+F L++++ + YPD+ G+RLAD +R V Q Sbjct: 200 GAWCELRGDFRNFGLEKIQQLEVREPYPDQEGRRLADLLRHVNAKPKQ 247 >ref|ZP_03270981.1| Helix-turn-helix type 11 domain protein [Burkholderia sp. H160] gb|EDZ97436.1| Helix-turn-helix type 11 domain protein [Burkholderia sp. H160] Length = 247 Score = 254 bits (648), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 120/220 (54%), Positives = 160/220 (72%), Gaps = 1/220 (0%) Query: 2 RRADRLFQITQYLRGRRLTTARQLAEWLSVSERTVYRDIRDLSLSGVPVQGEAGVGYRIN 61 RRADRLFQI + LRGRRLTTA+QLA+WL++S RTVYRD+RDL LSGVP++GEAG+GYR++ Sbjct: 21 RRADRLFQIAELLRGRRLTTAQQLADWLNISLRTVYRDVRDLQLSGVPIEGEAGIGYRLS 80 Query: 62 KTGFDLPPLMFSPDEIDALVIGMRMVQAWGGPQLAASAAASLAKIVLALPKDKRDFVENT 121 ++ LPPL F+ DE+ AL G RM+++WGG A+ A +LAKI A+P DKR +E Sbjct: 81 RSA-SLPPLTFTADELAALAAGARMLESWGGAGFASGARGALAKIASAMPADKRAALERL 139 Query: 122 ALFAPSFHIDQAHGERLEEIRQAIGKRCTLQLDYVDARGQATQRIVWPLALYFWGGGWSI 181 A+FAPSFHI +L+ + +AI R + Y DA G T+R VWPLAL +WG W++ Sbjct: 140 AIFAPSFHIKGDFSTQLDTLHRAIDTRQVVHFAYTDANGADTERRVWPLALAYWGARWTL 199 Query: 182 AAWCETRSDFRSFRLDRVRAMMPAHTYPDESGKRLADFVR 221 AWCE R DFR+F L+++R + TYPD+ G+RLAD +R Sbjct: 200 GAWCELRGDFRNFGLEKMRDLKVLETYPDQEGRRLADLLR 239