BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0378.p (357 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EFV85125.1| bile acid:sodium symporter [Achromobacter xylosox... 420 e-115 ref|ZP_06687129.1| sodium/bile acid symporter family protein [Ac... 419 e-115 gb|EGP44529.1| sodium bile acid symporter family protein 3 [Achr... 412 e-113 ref|YP_003978357.1| sodium bile acid symporter family protein 3 ... 407 e-111 ref|YP_003773950.1| Na+-dependent transporter protein [Herbaspir... 405 e-111 >gb|EFV85125.1| bile acid:sodium symporter [Achromobacter xylosoxidans C54] Length = 328 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 213/331 (64%), Positives = 256/331 (77%), Gaps = 3/331 (0%) Query: 24 MKRYFPDTFTWMLLGTVLLATLLPATGRFEELMHLASNTAIALLFFLHGARLSREAALSG 83 M+R+ PD FT +L+ TV A+ PA G+ M +ASN AI+LLFFLHGARLS +A ++G Sbjct: 1 MRRFLPDQFTLILIATVAFASFFPAVGKGASFMMVASNVAISLLFFLHGARLSTDAIVAG 60 Query: 84 FKQPRLHLLTLACTFVLFPLLGLALQHLFPGLLTQELWLGVLFVCTLSSTVQSSIAFTSI 143 K RLH L L CTF+LFP LGLAL+ +FPGLLT LWLGV+FVCTLSSTVQSSIAFTS+ Sbjct: 61 VKDVRLHALILGCTFILFPALGLALRAMFPGLLTPSLWLGVIFVCTLSSTVQSSIAFTSM 120 Query: 144 ARGNVPAAICGATASNLLGIVFTPVLVTLLLHRHHDGGGLRQVSGILLQLLLPFVLGNVL 203 ARGNVP AIC ATASNLLG V TP+LV +LLHR G GL ILLQLLLPF +G++L Sbjct: 121 ARGNVPGAICAATASNLLGTVLTPLLVAVLLHRQGGGHGLADAGRILLQLLLPFAVGSLL 180 Query: 204 RPWIGDWVLRKKGLLAVVDRGGILLAVYAAFSVAVAQGVWHLFPPQQLALLVLVNAILLG 263 RPWIG W R +L+ VDR ILLAVY AFS AVAQG+WH FP LA +VLVNA+LLG Sbjct: 181 RPWIGAWAQRNSRVLSKVDRSSILLAVYTAFSEAVAQGIWHAFPAIDLATMVLVNALLLG 240 Query: 264 GVLTLTTFGSRALGFARADEIVLVFCGSKKSLASGIPMASVLFSSSGVGIVLLPIMVFHQ 323 VL +TT+GSR LG ++ +EI LVFCGSKKSLASGIP+A+VLF +S +GIV+LP+M+FHQ Sbjct: 241 SVLLVTTWGSRKLGLSKENEITLVFCGSKKSLASGIPLATVLFGTSQMGIVVLPLMIFHQ 300 Query: 324 MQLMLCAILARRYAERQDADDLLQAAADGKA 354 MQLM+CA+LARRYA+R + QAA +A Sbjct: 301 MQLMVCAVLARRYADRAEPT---QAAEPARA 328 >ref|ZP_06687129.1| sodium/bile acid symporter family protein [Achromobacter piechaudii ATCC 43553] gb|EFF75979.1| sodium/bile acid symporter family protein [Achromobacter piechaudii ATCC 43553] Length = 327 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 211/327 (64%), Positives = 253/327 (77%) Query: 24 MKRYFPDTFTWMLLGTVLLATLLPATGRFEELMHLASNTAIALLFFLHGARLSREAALSG 83 M+R+ PD FT +L+ TV A+ PA G+ M +ASN AI+LLFFLHGARLS +A ++G Sbjct: 1 MRRFLPDQFTLILIATVAFASFFPAVGKGASFMMVASNVAISLLFFLHGARLSTDAIVAG 60 Query: 84 FKQPRLHLLTLACTFVLFPLLGLALQHLFPGLLTQELWLGVLFVCTLSSTVQSSIAFTSI 143 K RLH L L CTF+LFP LGL L+ +FPGLLT LWLGVLFVCTLSSTVQSSIAFTS+ Sbjct: 61 VKDVRLHALILGCTFILFPALGLGLRAMFPGLLTPSLWLGVLFVCTLSSTVQSSIAFTSM 120 Query: 144 ARGNVPAAICGATASNLLGIVFTPVLVTLLLHRHHDGGGLRQVSGILLQLLLPFVLGNVL 203 ARGNVP AIC ATASNLLG V TP+LV +LLHR G GL ILLQLLLPF +G++L Sbjct: 121 ARGNVPGAICAATASNLLGTVLTPLLVAVLLHRQGGGHGLADAGRILLQLLLPFAVGSLL 180 Query: 204 RPWIGDWVLRKKGLLAVVDRGGILLAVYAAFSVAVAQGVWHLFPPQQLALLVLVNAILLG 263 RPWIG W R L+ VDR ILLAVY AFS AVAQG+WH FP LA +VLVNA+LLG Sbjct: 181 RPWIGAWAQRNSRTLSKVDRSSILLAVYTAFSEAVAQGIWHAFPAIDLASMVLVNALLLG 240 Query: 264 GVLTLTTFGSRALGFARADEIVLVFCGSKKSLASGIPMASVLFSSSGVGIVLLPIMVFHQ 323 VL +TT+GSR LG ++ +EI LVFCGSKKSLASGIP+A+VLF +S +G+V+LP+M+FHQ Sbjct: 241 TVLVITTWGSRKLGLSKENEITLVFCGSKKSLASGIPLATVLFGTSQMGVVVLPLMIFHQ 300 Query: 324 MQLMLCAILARRYAERQDADDLLQAAA 350 MQLM+CA+LARRYA+RQ+ + A A Sbjct: 301 MQLMVCAVLARRYADRQEPAQVAVAQA 327 >gb|EGP44529.1| sodium bile acid symporter family protein 3 [Achromobacter xylosoxidans AXX-A] Length = 328 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 208/315 (66%), Positives = 248/315 (78%) Query: 24 MKRYFPDTFTWMLLGTVLLATLLPATGRFEELMHLASNTAIALLFFLHGARLSREAALSG 83 M+R+ PD FT +L+ TV A+ PA G+ M +ASN AI+LLFFLHGARLS +A ++G Sbjct: 1 MRRFLPDQFTLILIATVAFASFFPAVGKGASFMLVASNLAISLLFFLHGARLSTDAIVAG 60 Query: 84 FKQPRLHLLTLACTFVLFPLLGLALQHLFPGLLTQELWLGVLFVCTLSSTVQSSIAFTSI 143 K RLH L L CTF+LFP LGLAL+ FPGLLT LWLGV+FVCTLSSTVQSSIAFTS+ Sbjct: 61 VKDVRLHALILGCTFILFPALGLALRAAFPGLLTPALWLGVIFVCTLSSTVQSSIAFTSM 120 Query: 144 ARGNVPAAICGATASNLLGIVFTPVLVTLLLHRHHDGGGLRQVSGILLQLLLPFVLGNVL 203 ARGNVP AIC ATASNLLG V TP+LV +LLHR G GL ILLQLLLPF +G++L Sbjct: 121 ARGNVPGAICAATASNLLGTVLTPLLVAVLLHRQGGGHGLADAGRILLQLLLPFAVGSLL 180 Query: 204 RPWIGDWVLRKKGLLAVVDRGGILLAVYAAFSVAVAQGVWHLFPPQQLALLVLVNAILLG 263 RPWIG W R +L+ VDR ILLAVY AFS AVAQG+WH FP LA +VLVNA+LLG Sbjct: 181 RPWIGAWAQRNSRILSKVDRSSILLAVYTAFSEAVAQGIWHAFPAIDLATMVLVNALLLG 240 Query: 264 GVLTLTTFGSRALGFARADEIVLVFCGSKKSLASGIPMASVLFSSSGVGIVLLPIMVFHQ 323 VL +TT+GSR LG ++ +EI LVFCGSKKSLASGIP+A+VLF +S +GIV+LP+M+FHQ Sbjct: 241 AVLLITTWGSRELGLSKENEITLVFCGSKKSLASGIPLATVLFGTSQMGIVVLPLMIFHQ 300 Query: 324 MQLMLCAILARRYAE 338 MQLM+CA+LARRYA+ Sbjct: 301 MQLMVCAVLARRYAD 315 >ref|YP_003978357.1| sodium bile acid symporter family protein 3 [Achromobacter xylosoxidans A8] gb|ADP15642.1| sodium bile acid symporter family protein 3 [Achromobacter xylosoxidans A8] Length = 327 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 213/317 (67%), Positives = 251/317 (79%) Query: 24 MKRYFPDTFTWMLLGTVLLATLLPATGRFEELMHLASNTAIALLFFLHGARLSREAALSG 83 M+R+ PD FT +L+ TV+ A+ PA G+ M +ASN AI+LLFFLHGARLS +A ++G Sbjct: 1 MRRFLPDQFTLILIATVVFASFFPAVGQGAAFMTVASNIAISLLFFLHGARLSTDAIVAG 60 Query: 84 FKQPRLHLLTLACTFVLFPLLGLALQHLFPGLLTQELWLGVLFVCTLSSTVQSSIAFTSI 143 K RLH L LACTFVLFP LGL L+ LFP LLT LWLGVLFVCTLSSTVQSSIAFTS+ Sbjct: 61 VKDVRLHALILACTFVLFPALGLGLRALFPNLLTPSLWLGVLFVCTLSSTVQSSIAFTSM 120 Query: 144 ARGNVPAAICGATASNLLGIVFTPVLVTLLLHRHHDGGGLRQVSGILLQLLLPFVLGNVL 203 ARGNVP AIC ATASNLLG V TP+LV +LLHR G GL ILLQLLLPF +G++L Sbjct: 121 ARGNVPGAICAATASNLLGTVLTPLLVAVLLHRQGGGHGLADAGRILLQLLLPFAVGSLL 180 Query: 204 RPWIGDWVLRKKGLLAVVDRGGILLAVYAAFSVAVAQGVWHLFPPQQLALLVLVNAILLG 263 RPWIG W R L+ VDR ILLAVY AFS AVAQG+WH FPP LA +VLVNA+LLG Sbjct: 181 RPWIGAWAQRNNRTLSKVDRSSILLAVYTAFSEAVAQGIWHAFPPIDLASMVLVNALLLG 240 Query: 264 GVLTLTTFGSRALGFARADEIVLVFCGSKKSLASGIPMASVLFSSSGVGIVLLPIMVFHQ 323 VL +TT+GSR LG ++ +EI LVFCGSKKSLASGIP+A+VLF +S +G+V+LP+M+FHQ Sbjct: 241 TVLLVTTWGSRKLGLSKENEITLVFCGSKKSLASGIPLATVLFGTSQMGVVVLPLMIFHQ 300 Query: 324 MQLMLCAILARRYAERQ 340 MQLM+CA+LARRYAERQ Sbjct: 301 MQLMVCAVLARRYAERQ 317 >ref|YP_003773950.1| Na+-dependent transporter protein [Herbaspirillum seropedicae SmR1] gb|ADJ62042.1| Na+-dependent transporter protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 231/302 (76%), Positives = 260/302 (86%), Gaps = 4/302 (1%) Query: 56 MHLASNTAIALLFFLHGARLSREAALSGFKQPRLHLLTLACTFVLFPLLGLALQHLFPGL 115 MH+ASN AI+LLFFLHGA+LSREAAL+G KQPRLHLLTL TF+LFPLLGL L+ + P L Sbjct: 1 MHVASNVAISLLFFLHGAKLSREAALAGLKQPRLHLLTLGSTFLLFPLLGLGLKAVAPDL 60 Query: 116 LTQELWLGVLFVCTLSSTVQSSIAFTSIARGNVPAAICGATASNLLGIVFTPVLVTLLLH 175 LT +LW+GVLFVCTLSSTVQSSI FTSIARGNVPAAICGATASNLLGI+ TP+LVTLLLH Sbjct: 61 LTPQLWMGVLFVCTLSSTVQSSIGFTSIARGNVPAAICGATASNLLGILVTPLLVTLLLH 120 Query: 176 RHHDGGGLRQVSGILLQLLLPFVLGNVLRPWIGDWVLRKKGLLAVVDRGGILLAVYAAFS 235 RHH+ GL QV ILLQLLLPFVLGN+LRPWIGDW+ R K ++ VVDRGGILL+VYAAFS Sbjct: 121 RHHEANGLSQVLSILLQLLLPFVLGNLLRPWIGDWINRHKVIVNVVDRGGILLSVYAAFS 180 Query: 236 VAVAQGVWHLFPPQQLALLVLVNAILLGGVLTLTTFGSRALGFARADEIVLVFCGSKKSL 295 AVAQG+WHLFPP QLALLVLVNA+LLG VL +TT+G+RAL R DEIVLVFCGSKKSL Sbjct: 181 AAVAQGIWHLFPPGQLALLVLVNAMLLGAVLLITTYGARALKMPRGDEIVLVFCGSKKSL 240 Query: 296 ASGIPMASVLFSSSGVGIVLLPIMVFHQMQLMLCAILARRYAERQDADDLLQAAADGKAQ 355 ASGIP+ASVLF+ SG +VLLPIM+FHQMQLMLCA+LARRYA +QD D A D +Q Sbjct: 241 ASGIPIASVLFAGSGAAVVLLPIMLFHQMQLMLCAVLARRYAAQQDHLD----ADDASSQ 296 Query: 356 TA 357 A Sbjct: 297 RA 298