BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0376.p         (147 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001631118.1| hypothetical protein Bpet2508 [Bordetella pe...   167   4e-40
ref|NP_880190.1| hypothetical protein BP1448 [Bordetella pertuss...   161   2e-38
gb|EFV86522.1| hypothetical protein HMPREF0005_03716 [Achromobac...   161   3e-38
gb|EGP44107.1| thioesterase superfamily protein 8 [Achromobacter...   159   2e-37
ref|ZP_06687484.1| thioesterase [Achromobacter piechaudii ATCC 4...   158   3e-37

>ref|YP_001631118.1| hypothetical protein Bpet2508 [Bordetella petrii DSM 12804]
 emb|CAP42850.1| hypothetical protein Bpet2508 [Bordetella petrii]
          Length = 148

 Score =  167 bits (424), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 79/132 (59%), Positives = 101/132 (76%)

Query: 14  IRRVEESFSRQGALRTIGARLHSVTPGLVEIRLDFRPELGQQNGFLHAGMSTTIADTAGG 73
           ++RV +SF+RQ  +   GARL  V PG V+I L FR +L QQNG+LHAG+ST IAD+AGG
Sbjct: 14  LQRVHDSFARQTVMAAFGARLARVQPGQVDIELPFRADLCQQNGYLHAGISTAIADSAGG 73

Query: 74  YAAMSLFEAGEEVLTTELKLNLLAPAQGEYFIGRGRVVKSGRTLTICQIEVGAVRDGKET 133
           YAA SLFEAGE+VLT+E K+N LAPA GE F+  GRV+K GR LT+CQ+EV A R  + T
Sbjct: 74  YAAFSLFEAGEDVLTSEFKMNFLAPADGERFLATGRVLKPGRRLTVCQVEVQAWRGQQST 133

Query: 134 LCAYGIITAMRM 145
           LC  G++TA+R+
Sbjct: 134 LCLVGLMTAVRV 145


>ref|NP_880190.1| hypothetical protein BP1448 [Bordetella pertussis Tohama I]
 ref|NP_883842.1| hypothetical protein BPP1555 [Bordetella parapertussis 12822]
 ref|NP_889170.1| hypothetical protein BB2633 [Bordetella bronchiseptica RB50]
 emb|CAE41738.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 emb|CAE36857.1| conserved hypothetical protein [Bordetella parapertussis]
 emb|CAE33126.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
 gb|AEE66811.1| hypothetical protein BPTD_1432 [Bordetella pertussis CS]
          Length = 145

 Score =  161 bits (408), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/131 (58%), Positives = 102/131 (77%)

Query: 15  RRVEESFSRQGALRTIGARLHSVTPGLVEIRLDFRPELGQQNGFLHAGMSTTIADTAGGY 74
           +RV ++F+RQ  +  IGARL +V PG VEI L +R +L QQNGFLHAG+STTIAD+AGGY
Sbjct: 12  QRVHDNFARQSVMALIGARLGAVEPGEVEIALPYRADLCQQNGFLHAGISTTIADSAGGY 71

Query: 75  AAMSLFEAGEEVLTTELKLNLLAPAQGEYFIGRGRVVKSGRTLTICQIEVGAVRDGKETL 134
           AA +LF  GE+VLT+E K+N LAPA GE+F+  G+V+K GR L+ICQ+E+ A R  + TL
Sbjct: 72  AAYTLFGPGEDVLTSEFKMNFLAPADGEHFVASGKVLKPGRRLSICQVELRACRGERSTL 131

Query: 135 CAYGIITAMRM 145
           C  G++TA+R+
Sbjct: 132 CLVGLMTAVRV 142


>gb|EFV86522.1| hypothetical protein HMPREF0005_03716 [Achromobacter xylosoxidans
           C54]
          Length = 145

 Score =  161 bits (408), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 77/134 (57%), Positives = 100/134 (74%)

Query: 12  DMIRRVEESFSRQGALRTIGARLHSVTPGLVEIRLDFRPELGQQNGFLHAGMSTTIADTA 71
           D   RV+ SF RQ  +R +GA L  V PG V+I L +R +L QQNGFLHAG+STTIAD+A
Sbjct: 9   DPAGRVQASFERQSIMRLLGASLDVVEPGRVDIVLPYRADLCQQNGFLHAGISTTIADSA 68

Query: 72  GGYAAMSLFEAGEEVLTTELKLNLLAPAQGEYFIGRGRVVKSGRTLTICQIEVGAVRDGK 131
           GGYAA SLF+ GE+VLT+E K+N LAPA+GE ++  GRVVK G+ L+ICQ+EV A    +
Sbjct: 69  GGYAAFSLFQPGEDVLTSEFKMNFLAPAKGERYVASGRVVKPGKRLSICQVEVHAYEGEQ 128

Query: 132 ETLCAYGIITAMRM 145
            TLC  G++TA+R+
Sbjct: 129 ATLCVIGLLTAVRV 142


>gb|EGP44107.1| thioesterase superfamily protein 8 [Achromobacter xylosoxidans
           AXX-A]
          Length = 145

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/134 (57%), Positives = 99/134 (73%)

Query: 12  DMIRRVEESFSRQGALRTIGARLHSVTPGLVEIRLDFRPELGQQNGFLHAGMSTTIADTA 71
           D   RV+ SF RQ  +  +GA L  V PG V+I L +R +L QQNGFLHAG+STTIAD+A
Sbjct: 9   DPAGRVQASFERQSIMGLLGASLDVVEPGRVDIVLPYRADLCQQNGFLHAGISTTIADSA 68

Query: 72  GGYAAMSLFEAGEEVLTTELKLNLLAPAQGEYFIGRGRVVKSGRTLTICQIEVGAVRDGK 131
           GGYAA SLF+ GE+VLT+E KLN LAPA+GE ++  GRVVK G+ L+ICQ+EV A    +
Sbjct: 69  GGYAAFSLFQPGEDVLTSEFKLNFLAPAKGERYVASGRVVKPGKRLSICQVEVHAYEGEQ 128

Query: 132 ETLCAYGIITAMRM 145
            TLC  G++TA+R+
Sbjct: 129 ATLCVIGLLTAVRV 142


>ref|ZP_06687484.1| thioesterase [Achromobacter piechaudii ATCC 43553]
 gb|EFF75584.1| thioesterase [Achromobacter piechaudii ATCC 43553]
          Length = 145

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 76/135 (56%), Positives = 101/135 (74%)

Query: 11  ADMIRRVEESFSRQGALRTIGARLHSVTPGLVEIRLDFRPELGQQNGFLHAGMSTTIADT 70
           AD   RV+ SF +Q  +R +GARL  V PG V+I L +R +L QQNGFLHAG+STTIAD+
Sbjct: 8   ADPAGRVKASFDQQTVMRLLGARLDVVEPGRVDIGLPYRADLCQQNGFLHAGISTTIADS 67

Query: 71  AGGYAAMSLFEAGEEVLTTELKLNLLAPAQGEYFIGRGRVVKSGRTLTICQIEVGAVRDG 130
           AGGYAA +LF  GE+VLT+E K+N LAPA+G+ ++  GRVVK G+ L+ICQ+EV A    
Sbjct: 68  AGGYAAYTLFGPGEDVLTSEFKMNFLAPAKGDRYVASGRVVKPGKRLSICQVEVHAYEGE 127

Query: 131 KETLCAYGIITAMRM 145
           + TLC  G++TA+R+
Sbjct: 128 QATLCVIGLLTAVRV 142