BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0374.p (341 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773952.1| hypothetical protein Hsero_0525 [Herbaspiril... 410 e-112 ref|YP_296661.1| hypothetical protein Reut_A2455 [Ralstonia eutr... 229 4e-58 ref|NP_951570.1| hypothetical protein GSU0512 [Geobacter sulfurr... 228 2e-57 ref|ZP_08780656.1| protein of unknown function DUF342 [Methyloba... 226 4e-57 ref|YP_385965.1| hypothetical protein Gmet_3025 [Geobacter metal... 222 6e-56 >ref|YP_003773952.1| hypothetical protein Hsero_0525 [Herbaspirillum seropedicae SmR1] gb|ADJ62044.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 545 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 203/344 (59%), Positives = 260/344 (75%), Gaps = 3/344 (0%) Query: 1 VPGVNGVNIKGQAVPALPVPDLGFNKDCVGAEPSKDDPDLLVAAIAGQPQLITNGVKINP 60 VPG +G++I+G VPA P+ D+GF K+CVGAEPS DDPDLL+A + GQP LI NGVK+NP Sbjct: 201 VPGQDGIDIRGGKVPARPIADIGFAKECVGAEPSPDDPDLLIAMVPGQPSLIKNGVKVNP 260 Query: 61 IVEIEDVDLSTGNVEFSGTVKIKGDVKTGMRLRVSGDVFVGGTVEAAEIIAGGNITVKGG 120 ++++E+VDLSTGN+ F GTV++ GDV TGM+L V GDV V GTVEAAEI+AGG++TVKGG Sbjct: 261 VIDVENVDLSTGNLTFEGTVRVSGDVMTGMKLHVGGDVVVNGTVEAAEIVAGGSVTVKGG 320 Query: 121 IIGHAE---TQPGMASIVAKVKAEGCVQALFAESAHIEAGDSIMLAGNARQCEMLAGNEI 177 +IGH+E G +I +++ ++ VQ +FAESAHIEA D I++ GNAR CE+LAGNEI Sbjct: 321 VIGHSEGVAAGAGTTAIASRISSQKSVQVMFAESAHIEAADDILVLGNARHCELLAGNEI 380 Query: 178 LVGKTNPKLGQIIGGRAQATMLIKAVAFGSSSAATTRIQVGLDPYLEEKLRAKEQEFQRK 237 VGK NP+ G IIGGR +AT +I+A G+ +AA TRIQVGLDPYLEEK+ KEQE+ RK Sbjct: 381 TVGKGNPRTGHIIGGRVEATNIIRANVIGAPTAAHTRIQVGLDPYLEEKIAIKEQEYSRK 440 Query: 238 LDDLNRVIKQLAHYKQNPEKARNGAGEEAELNRKLLAQEVKDLVAEQNEMKEDLVAAESA 297 + +L+R IKQ ++YK NP+KA E RK LA EVK L+ E ++MKE +VAAE A Sbjct: 441 VAELDRTIKQQSYYKLNPDKATPELLHETSDKRKALAYEVKVLLEEVSQMKEGMVAAEDA 500 Query: 298 RIVAVKAVYEGVEMRIAKQVWQVLSDLGGGTAQLQGGKISFGGK 341 RI+ KAV+EG E+RI +VW V SDLGGGTAQL G I + K Sbjct: 501 RIIVAKAVHEGTELRIGHEVWPVQSDLGGGTAQLFEGDIRYNPK 544 >ref|YP_296661.1| hypothetical protein Reut_A2455 [Ralstonia eutropha JMP134] gb|AAZ61817.1| Protein of unknown function DUF342 [Ralstonia eutropha JMP134] Length = 538 Score = 229 bits (584), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 131/339 (38%), Positives = 213/339 (62%), Gaps = 4/339 (1%) Query: 2 PGVNGVNIKGQAVPALPVPDLGFNKDCVGAEPSKDDPDLLVAAIAGQPQLITNGVKINPI 61 PG +GV++ G+A+PA PV D F + GA +DP+LLVA +AG P + +G+ ++P+ Sbjct: 199 PGNDGVDVFGKALPADPVEDTPFAEGLTGAAADPNDPNLLVAVLAGAPVVGMHGIAVSPV 258 Query: 62 VEIEDVDLSTGNVEFSGTVKIKGDVKTGMRLRVSGDVFVGGTVEAAEIIAGGNITVKGGI 121 V++E VDL +GNV F GT+++ GD++TGM ++V+GDV V GT+EAA I AGG+I VKGGI Sbjct: 259 VQVESVDLHSGNVAFDGTLRVSGDIRTGMSVKVTGDVLVEGTIEAATIEAGGSIVVKGGI 318 Query: 122 IGHAET---QPGMASIVAKVKAEGCVQALFAESAHIEAGDSIMLAGNARQCEMLAGNEIL 178 IG +ET +P A V+ +G VQA F E+A +EAG + + RQ ++ AG I+ Sbjct: 319 IGKSETGHAEPSGTISRASVRCQGAVQARFIENAVVEAGTEVAVESGIRQSDVAAGERIV 378 Query: 179 VGKTNPKLGQIIGGRAQATMLIKAVAFGSSSAATTRIQVGLDPYLEEKLRAKEQEFQRKL 238 VG T+ +G I GGR++A + ++A G+ + + T +QVGL+PY + + A E E +R L Sbjct: 379 VGGTS-GMGSISGGRSRALLGVRAAVLGAPAGSATIVQVGLNPYADAQRAALEAERRRLL 437 Query: 239 DDLNRVIKQLAHYKQNPEKARNGAGEEAELNRKLLAQEVKDLVAEQNEMKEDLVAAESAR 298 ++ N+V + +A + ++PE+A E+A + ++ DL A+ E+ + A A Sbjct: 438 EEQNKVKQLVAFFAKHPERAVGDLREKARATLFKSSSDLFDLDAKIAELGAQMNPAAGAV 497 Query: 299 IVAVKAVYEGVEMRIAKQVWQVLSDLGGGTAQLQGGKIS 337 I A + ++ GV +++ +V +V+ D GG +L +I+ Sbjct: 498 IEAGRRIHGGVTLQVGNRVLKVMEDKPGGNIRLVDDRIA 536 >ref|NP_951570.1| hypothetical protein GSU0512 [Geobacter sulfurreducens PCA] gb|AAR33843.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] gb|ADI83364.1| protein of unknown function DUF342 [Geobacter sulfurreducens KN400] Length = 546 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 131/342 (38%), Positives = 200/342 (58%), Gaps = 10/342 (2%) Query: 1 VPGVNGVNIKGQAVPALPVPDLGFNKDCVGAEPSKDDPDLLVAAIAGQPQLITNGVKINP 60 V GV G +I G+A+ + P D+ F + G DDP+LLVAA+ GQP L+ NG+ + Sbjct: 205 VEGVAGTSITGKAISSPPARDVAFAPNLPGTAFDADDPNLLVAAVDGQPVLVANGIVVEQ 264 Query: 61 IVEIEDVDLSTGNVEFSGTVKIKGDVKTGMRLRVSGDVFVGGTVEAAEIIAGGNITVKGG 120 ++ ++ VDLS GN++F+GT+ I GDV GM ++ SGD+ +GG VEA+ I AGGNI V+GG Sbjct: 265 VLRLKLVDLSVGNLDFNGTIDIAGDVVAGMTVKASGDIIIGGVVEASRIEAGGNIEVRGG 324 Query: 121 IIGHAETQPGMASI---VAKVKAEGCVQALFAESAHIEAGDSIMLAGNARQCEMLAGNEI 177 +IG +T+ A +++A GCV A F E+A +EAGDSI + Q E++AGN+I Sbjct: 325 VIGQGDTRSSAAEAGRDTVRIRAGGCVSAQFVENAFVEAGDSIQVQEFCMQSELVAGNQI 384 Query: 178 LVGKTNPKLGQIIGGRAQATMLIKAVAFGSSSAATTRIQVGLDPYLEEKL---RAKEQEF 234 +VG G +IGG QA L++AV GS + T + VG+DP++ E+ R K QE Sbjct: 385 VVGHDGGSKGHVIGGSCQAINLVRAVTLGSHAGVHTTVSVGVDPHVRERFSTVRLKLQEK 444 Query: 235 QRKLDDLNRVIKQLAHYKQNPEKARNGAGEEAELNRKLLAQEVKDLVAEQNEMKEDLVAA 294 +R++D+L K+L +Y P E KL + + +L E+ +++ L Sbjct: 445 EREMDELA---KKLEYYVSLPSAQPEQVARTREARDKLQSV-ISELTGEKKRLQKRLEQV 500 Query: 295 ESARIVAVKAVYEGVEMRIAKQVWQVLSDLGGGTAQLQGGKI 336 SA++V + GV + I +V+QV DLG +++ G I Sbjct: 501 ASAQVVVEREALVGVVISIGAKVFQVDEDLGATVFRIEEGAI 542 >ref|ZP_08780656.1| protein of unknown function DUF342 [Methylobacter tundripaludum SV96] gb|EGW22831.1| protein of unknown function DUF342 [Methylobacter tundripaludum SV96] Length = 559 Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 137/350 (39%), Positives = 211/350 (60%), Gaps = 17/350 (4%) Query: 3 GVNGVNIKGQAVPALPVPDLGFNKDCVGAEPSKD---DPD---LLVAAIAGQPQLITNGV 56 G G +I GQA+ P D+ F G E D DPD LL+AAIAGQP+L+ NGV Sbjct: 204 GKKGWDITGQALMPQPGQDVQFAPGLQGVELDTDAELDPDNNSLLLAAIAGQPKLVPNGV 263 Query: 57 KINPIVEIEDVDLSTGNVEFSGTVKIKGDVKTGMRLRVSGDVFVGGTVEAAEIIAGGNIT 116 + P + + VD+STGN+ F GT+ IKGDVK GM++ +GDVFVGGTVEAAEI AGGNI Sbjct: 264 VVEPTIALSLVDISTGNMSFDGTINIKGDVKDGMKIHATGDVFVGGTVEAAEIEAGGNIV 323 Query: 117 VKGGIIGHAETQ--PG-MASIVAKVKAEGCVQALFAESAHIEAGDSIMLAGNARQCEMLA 173 +KGG+IGH+E P +++ A + ++G + A FAE+A +EAG I++ + + A Sbjct: 324 IKGGVIGHSEHSGDPNEVSTFNAIIISKGSISAHFAENACMEAGVDIIIEEFSMHNHLTA 383 Query: 174 GNEILVGKTNPKLGQIIGGRAQATMLIKAVAFGSSSAATTRIQVGLDPYL---EEKLRAK 230 N +LVGK+ K G+IIGG A+ L+K GSS+ T+++ G +PYL +++L+ + Sbjct: 384 LNRVLVGKSVGKKGRIIGGITSASDLVKTAIIGSSAGFVTKVRAGFNPYLQAEQDRLKLE 443 Query: 231 EQEFQRKLDDLNRVIK-QLAHYKQNPEKARNGAGEEAELNRKLLAQEVKDLVAEQNEMKE 289 + +++ +DL ++I LAH PEK +NG +A R+ + + L ++ + Sbjct: 444 IEALEKEQEDLKKIIAFVLAH----PEKDKNGLLNKALHTREKIEMDCTRLHVDRTHLLS 499 Query: 290 DLVAAESARIVAVKAVYEGVEMRIAKQVWQVLSDLGGGTAQLQGGKISFG 339 ++ AE +++ +AV+ G E++I VW+ + G G Q+ +I FG Sbjct: 500 EMTLAEHVQVIVEEAVHAGAEIQIGNAVWKNNEERGKGVFQIVENEIVFG 549 >ref|YP_385965.1| hypothetical protein Gmet_3025 [Geobacter metallireducens GS-15] gb|ABB33240.1| protein of unknown function DUF342 [Geobacter metallireducens GS-15] Length = 546 Score = 222 bits (566), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 133/333 (39%), Positives = 196/333 (58%), Gaps = 9/333 (2%) Query: 1 VPGVNGVNIKGQAVPALPVPDLGFNKDCVGAEPSKDDPDLLVAAIAGQPQLITNGVKINP 60 PG G NI G+ VPA P DL F + G + DDPDLL+AAI GQP L+ NGV I P Sbjct: 203 TPGKPGTNIMGKEVPAPPAKDLKFTPNLPGTTFAPDDPDLLIAAIDGQPVLVANGVMIEP 262 Query: 61 IVEIEDVDLSTGNVEFSGTVKIKGDVKTGMRLRVSGDVFVGGTVEAAEIIAGGNITVKGG 120 +++I++VDLS+GN+ F G+V I GD+ GM +R +GD+ VGG VE A + A G+I V+GG Sbjct: 263 VIKIKNVDLSSGNISFKGSVDISGDITPGMTVRATGDITVGGVVEGATLEAEGDIVVRGG 322 Query: 121 IIGHAETQ-PGMAS--IVAKVKAEGCVQALFAESAHIEAGDSIMLAGNARQCEMLAGNEI 177 IIG E + P S A ++A+G ++ALF E++ +EAG I +AG A Q ++AG ++ Sbjct: 323 IIGPGENRDPKGKSGQERALIRAKGNIEALFVENSLVEAGGMIQIAGFAMQSNLVAGTQV 382 Query: 178 LVGKTNPKLGQIIGGRAQATMLIKAVAFGSSSAATTRIQVGLDPYLEEKL---RAKEQEF 234 +VG+ G IIGG QA I+AV GS + T + VG++P+++EKL + K E Sbjct: 383 VVGQEGTTKGHIIGGSCQAVSRIQAVTLGSHAGVHTTVSVGVNPHVKEKLSTVKLKIAEA 442 Query: 235 QRKLDDLNRVIKQLAHYKQNPEKARNGAGEEAELNRKLLAQEVKDLVAEQNEMKEDLVAA 294 +R+LD+L K+L ++ P K E + L + +L E+ +++ L A Sbjct: 443 ERELDELT---KRLDYFASTPLKGSPEQINETRQAKDKLVTALSELKGERKRLEKRLEQA 499 Query: 295 ESARIVAVKAVYEGVEMRIAKQVWQVLSDLGGG 327 A I +AV GV + I + +V D+ GG Sbjct: 500 SDALIRVERAVLSGVVISIGTKTLEVKDDMEGG 532