BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0371.p         (153 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004750680.1| malic enzyme [Collimonas fungivorans Ter331]...   193   7e-48
ref|YP_004618913.1| hypothetical protein Rta_18040 [Ramlibacter ...   193   8e-48
ref|YP_546946.1| hypothetical protein Bpro_0081 [Polaromonas sp....   192   2e-47
ref|YP_002948148.1| Tetratricopeptide TPR_4 [Variovorax paradoxu...   192   2e-47
ref|YP_004156726.1| hypothetical protein Varpa_4447 [Variovorax ...   186   8e-46

>ref|YP_004750680.1| malic enzyme [Collimonas fungivorans Ter331]
 gb|AEK59857.1| malic enzyme [Collimonas fungivorans Ter331]
          Length = 413

 Score =  193 bits (491), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 116/145 (80%), Positives = 125/145 (86%), Gaps = 3/145 (2%)

Query: 9   DREALIARAFNTRRPDESHRARLRVEIGRLRALVATLAQIEATPRGFVLKPLDEREVVVL 68
           DREALI  AFNTR PDE+HRARLRVEIGRLRALV  LAQIEAT RGFVLKPL ER VV+L
Sbjct: 272 DREALIEAAFNTRHPDETHRARLRVEIGRLRALVTELAQIEATARGFVLKPLGERAVVLL 331

Query: 69  APPIAGDQAALLALLADGEAWSTSSLALALGVSQRTLQRALAGLEAAGHVRAIGQARTRR 128
           APPI GDQA+L ALLADG AWSTS+LALALG SQRT+QRALA LEAAG VR+IG+ART+R
Sbjct: 332 APPIDGDQASLAALLADGAAWSTSALALALGASQRTVQRALAELEAAGRVRSIGRARTQR 391

Query: 129 WLSTPLAGGAGITTILLLPAALAMD 153
           WLS PL   AG TTILLLPAAL M+
Sbjct: 392 WLSPPL---AGFTTILLLPAALQME 413


>ref|YP_004618913.1| hypothetical protein Rta_18040 [Ramlibacter tataouinensis TTB310]
 gb|AEG92894.1| conserved hypothetical protein [Ramlibacter tataouinensis TTB310]
          Length = 406

 Score =  193 bits (490), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 106/144 (73%), Positives = 120/144 (83%), Gaps = 3/144 (2%)

Query: 7   QADREALIARAFNTRRPDESHRARLRVEIGRLRALVATLAQIEATPRGFVLKPLDEREVV 66
            A+R+ALIA AF TRRPDE+HRARLRVEIGRLRALV  +A IEATPRGFVL+P    EVV
Sbjct: 263 DAERDALIATAFRTRRPDETHRARLRVEIGRLRALVRDMAGIEATPRGFVLQPRAACEVV 322

Query: 67  VLAPPIAGDQAALLALLADGEAWSTSSLALALGVSQRTLQRALAGLEAAGHVRAIGQART 126
           VLAPPI G+QA+L+ALLADG AWSTS+LALALG SQRT+QRA+A LEAAG VR IGQ+R 
Sbjct: 323 VLAPPIDGEQASLVALLADGAAWSTSALALALGTSQRTVQRAVAELEAAGQVRGIGQSRA 382

Query: 127 RRWLSTPLAGGAGITTILLLPAAL 150
           RRWL+ PL      TTILLLPA+L
Sbjct: 383 RRWLAAPL---VDFTTILLLPASL 403


>ref|YP_546946.1| hypothetical protein Bpro_0081 [Polaromonas sp. JS666]
 gb|ABE42048.1| Tetratricopeptide TPR_4 [Polaromonas sp. JS666]
          Length = 408

 Score =  192 bits (487), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 105/141 (74%), Positives = 119/141 (84%), Gaps = 3/141 (2%)

Query: 10  REALIARAFNTRRPDESHRARLRVEIGRLRALVATLAQIEATPRGFVLKPLDEREVVVLA 69
           REALI  AF T+RPDE+HRARLRVEIGRLRALV  LA IEAT RGF+LKPL  R+V VLA
Sbjct: 268 REALIESAFRTKRPDETHRARLRVEIGRLRALVKPLAAIEATERGFILKPLAGRDVAVLA 327

Query: 70  PPIAGDQAALLALLADGEAWSTSSLALALGVSQRTLQRALAGLEAAGHVRAIGQARTRRW 129
           PPI G+QA+L+ALL+DG AWSTS+LALALG SQRT+QRALA LEA G VR+IG+AR +RW
Sbjct: 328 PPIDGEQASLVALLSDGAAWSTSALALALGASQRTVQRALADLEADGRVRSIGRARAQRW 387

Query: 130 LSTPLAGGAGITTILLLPAAL 150
           L+ PL   AG TTILLLPAAL
Sbjct: 388 LAPPL---AGFTTILLLPAAL 405


>ref|YP_002948148.1| Tetratricopeptide TPR_4 [Variovorax paradoxus S110]
 gb|ACS22882.1| Tetratricopeptide TPR_4 [Variovorax paradoxus S110]
          Length = 406

 Score =  192 bits (487), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/145 (74%), Positives = 121/145 (83%), Gaps = 3/145 (2%)

Query: 9   DREALIARAFNTRRPDESHRARLRVEIGRLRALVATLAQIEATPRGFVLKPLDEREVVVL 68
           DREALIA AFNTR PDE+ RARLRVEIGRLRALVA  A IEAT RGF L+P D REVVVL
Sbjct: 265 DREALIACAFNTRHPDETLRARLRVEIGRLRALVAAEAGIEATARGFALRPRDAREVVVL 324

Query: 69  APPIAGDQAALLALLADGEAWSTSSLALALGVSQRTLQRALAGLEAAGHVRAIGQARTRR 128
           APPI G+QA+L+ALL+DG AWSTS+LALAL  SQRT+QRALA LEA G VRAIG+AR +R
Sbjct: 325 APPIDGEQASLVALLSDGAAWSTSALALALDASQRTVQRALAELEAEGRVRAIGRARAQR 384

Query: 129 WLSTPLAGGAGITTILLLPAALAMD 153
           WL+ PL   AG TTILLLPAAL ++
Sbjct: 385 WLAPPL---AGFTTILLLPAALPIE 406


>ref|YP_004156726.1| hypothetical protein Varpa_4447 [Variovorax paradoxus EPS]
 gb|ADU38615.1| tetratricopeptide TPR_4 [Variovorax paradoxus EPS]
          Length = 420

 Score =  186 bits (473), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 104/142 (73%), Positives = 117/142 (82%), Gaps = 3/142 (2%)

Query: 9   DREALIARAFNTRRPDESHRARLRVEIGRLRALVATLAQIEATPRGFVLKPLDEREVVVL 68
           +RE LIA AFNTR PDE+ RARLRVEIGRLRALVA  A IEAT RGF LKP D REVV+L
Sbjct: 279 ERETLIAYAFNTRHPDETLRARLRVEIGRLRALVAAEAGIEATARGFALKPRDGREVVLL 338

Query: 69  APPIAGDQAALLALLADGEAWSTSSLALALGVSQRTLQRALAGLEAAGHVRAIGQARTRR 128
           APPI G+Q AL+ALL+DG AWSTS+LALAL  SQRT+QRALA LEA G VRAIG+AR +R
Sbjct: 339 APPIDGEQGALVALLSDGAAWSTSALALALDASQRTVQRALAELEAEGRVRAIGRARAQR 398

Query: 129 WLSTPLAGGAGITTILLLPAAL 150
           WL+ PL   AG TTILLLP++L
Sbjct: 399 WLAPPL---AGFTTILLLPSSL 417