BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0367.p (240 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001098830.1| putative signaling protein [Herminiimonas ar... 330 1e-88 ref|YP_003777124.1| GGDEF domain-containing protein [Herbaspiril... 318 4e-85 ref|YP_584410.1| putative signaling protein [Cupriavidus metalli... 246 3e-63 ref|YP_003881876.1| sensory box/GGDEF family protein [Dickeya da... 236 2e-60 ref|ZP_08570917.1| diguanylate cyclase (GGDEF) domain-containing... 233 1e-59 >ref|YP_001098830.1| putative signaling protein [Herminiimonas arsenicoxydans] emb|CAL60703.1| conserved hypothetical protein; putative GGDEF domain [Herminiimonas arsenicoxydans] Length = 258 Score = 330 bits (846), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 163/235 (69%), Positives = 189/235 (80%) Query: 1 MSDIDLFEAETAVLANANDVLANDVVSANEYRVALKELVQGYGQLMRESRRLIARSDRTE 60 M+D DLFEAETA L +A DV++ D S +EYR+AL L + + +LMRE+RRLIARSDR E Sbjct: 1 MNDNDLFEAETAALNSAYDVISKDDASGDEYRIALDNLAKDFHRLMRETRRLIARSDRKE 60 Query: 61 RELNLLNSRLKQLSDELDYKARHDNLTGALNRGAVFDLAHRFLQDSSLSLIVLDIDFFKR 120 ELN LN +L+QL+ ELDYKARHDNLTG LNRGAVFD A +L+ + LSLIVLDIDFFKR Sbjct: 61 LELNTLNFKLEQLTSELDYKARHDNLTGVLNRGAVFDQAEHYLKSNPLSLIVLDIDFFKR 120 Query: 121 INDEFGHPAGDAVIRELVNRLRKSLDGKGEIGRVGGEEFTVLLRNASLDEAVQLAEKVRL 180 INDEFGHP GDAV+RELV +L+ SL+G GEIGRVGGEEFTVLL N SLD+A+++AE VRL Sbjct: 121 INDEFGHPTGDAVLRELVKKLKSSLNGVGEIGRVGGEEFTVLLPNISLDDAIEIAENVRL 180 Query: 181 TIAGELFSGLPSRPVTASFGVSWSKAGSDFENAYARADAALYKAKHGGRNRVERD 235 IA E F+ P VTASFG+SWS DFENAY RADAALYKAKH GRNRVE D Sbjct: 181 AIAAETFTCFPRPHVTASFGISWSDTNCDFENAYGRADAALYKAKHNGRNRVEAD 235 >ref|YP_003777124.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ65216.1| GGDEF domain containing protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 318 bits (816), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 168/233 (72%), Positives = 191/233 (81%) Query: 1 MSDIDLFEAETAVLANANDVLANDVVSANEYRVALKELVQGYGQLMRESRRLIARSDRTE 60 MS +DLFE E L ANDVLA + YR AL+ELVQ YGQLMR+SRRLI+RSDRTE Sbjct: 1 MSKVDLFEQEALALQRANDVLAMAAPDPSAYRTALQELVQHYGQLMRQSRRLISRSDRTE 60 Query: 61 RELNLLNSRLKQLSDELDYKARHDNLTGALNRGAVFDLAHRFLQDSSLSLIVLDIDFFKR 120 RELN LN+RL+QLSDELDYKARHDNLTGALNRGAVF+ AH+ LQ S +SL+VLDIDFFKR Sbjct: 61 RELNQLNARLQQLSDELDYKARHDNLTGALNRGAVFERAHQVLQKSPMSLVVLDIDFFKR 120 Query: 121 INDEFGHPAGDAVIRELVNRLRKSLDGKGEIGRVGGEEFTVLLRNASLDEAVQLAEKVRL 180 INDEFGHP GDAVIRELV RLR ++DG G IGRVGGEEFT+LL +L+ AV LA ++R Sbjct: 121 INDEFGHPTGDAVIRELVARLRTTVDGVGVIGRVGGEEFTILLPGMALEPAVVLAGRIRQ 180 Query: 181 TIAGELFSGLPSRPVTASFGVSWSKAGSDFENAYARADAALYKAKHGGRNRVE 233 IAGE F LP+RPVT+SFGV+W+ AGSDFE AYARAD ALY+AK GRNRVE Sbjct: 181 AIAGERFGCLPARPVTSSFGVAWATAGSDFEQAYARADQALYQAKRSGRNRVE 233 >ref|YP_584410.1| putative signaling protein [Cupriavidus metallidurans CH34] gb|ABF09141.1| putative signaling protein (GGDEF domain) [Cupriavidus metallidurans CH34] Length = 237 Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 128/232 (55%), Positives = 162/232 (69%) Query: 1 MSDIDLFEAETAVLANANDVLANDVVSANEYRVALKELVQGYGQLMRESRRLIARSDRTE 60 M + DLFE+E +VLA+A V + YR L +L+ Y +LMRE+RRLI RSDR E Sbjct: 1 MPEPDLFESENSVLAHARSVFCDVDAGEEAYRHTLGQLISYYERLMRETRRLIRRSDREE 60 Query: 61 RELNLLNSRLKQLSDELDYKARHDNLTGALNRGAVFDLAHRFLQDSSLSLIVLDIDFFKR 120 E+N LN RL++L+ EL+Y+A HD LTGALNRGAV D A L SL+LIV+DID FKR Sbjct: 61 LEMNRLNHRLQELAQELEYRATHDTLTGALNRGAVIDRATAALARGSLALIVIDIDHFKR 120 Query: 121 INDEFGHPAGDAVIRELVNRLRKSLDGKGEIGRVGGEEFTVLLRNASLDEAVQLAEKVRL 180 +ND+FGHP GDAVI + L+ ++ +G IGR+GGEEF LL + ++D A LA+++R Sbjct: 121 LNDDFGHPVGDAVICGVTACLKDTVRMEGVIGRMGGEEFAALLPDFTIDAAATLADQMRQ 180 Query: 181 TIAGELFSGLPSRPVTASFGVSWSKAGSDFENAYARADAALYKAKHGGRNRV 232 IAG F +R VTASFGVSWS G FE+AY RAD ALY+AK GGRNRV Sbjct: 181 AIAGHRFPAPVNREVTASFGVSWSPQGRPFEHAYGRADEALYEAKRGGRNRV 232 >ref|YP_003881876.1| sensory box/GGDEF family protein [Dickeya dadantii 3937] gb|ADM97319.1| Sensory box/GGDEF family protein [Dickeya dadantii 3937] Length = 241 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 119/233 (51%), Positives = 154/233 (66%) Query: 1 MSDIDLFEAETAVLANANDVLANDVVSANEYRVALKELVQGYGQLMRESRRLIARSDRTE 60 MS +LF E +L +A ++ A + A YR +L L + Y +L+RE+ RLI RSDR E Sbjct: 1 MSSYELFTPEYDILLSARNIAAQADMPAEVYRESLIMLAEHYQRLVRETHRLITRSDRAE 60 Query: 61 RELNLLNSRLKQLSDELDYKARHDNLTGALNRGAVFDLAHRFLQDSSLSLIVLDIDFFKR 120 REL LN++L QL+ EL+YKA HD LT NR A+ DL L+ +LIVLDID FK+ Sbjct: 61 RELTRLNTQLHQLAVELEYKATHDPLTDVFNRSAIIDLVDHALEQDQAALIVLDIDHFKQ 120 Query: 121 INDEFGHPAGDAVIRELVNRLRKSLDGKGEIGRVGGEEFTVLLRNASLDEAVQLAEKVRL 180 +ND +GHP GDAVI L+ R+R L GKG IGRVGGEEFT+LL +L AV +AE + Sbjct: 121 VNDAYGHPTGDAVICSLIARIRDVLQGKGSIGRVGGEEFTILLDGYTLMAAVDVAEHIHA 180 Query: 181 TIAGELFSGLPSRPVTASFGVSWSKAGSDFENAYARADAALYKAKHGGRNRVE 233 ++ G LP + VTASFGVSW+ + F+ Y+ AD ALY+AKH GRNRVE Sbjct: 181 SLNGAALEALPQQKVTASFGVSWAPPRTGFDTLYSTADTALYRAKHQGRNRVE 233 >ref|ZP_08570917.1| diguanylate cyclase (GGDEF) domain-containing protein [Rheinheimera sp. A13L] gb|EGM77614.1| diguanylate cyclase (GGDEF) domain-containing protein [Rheinheimera sp. A13L] Length = 240 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 121/230 (52%), Positives = 156/230 (67%) Query: 5 DLFEAETAVLANANDVLANDVVSANEYRVALKELVQGYGQLMRESRRLIARSDRTERELN 64 DLF+ E LA A +D S+ +YR AL EL+ Y +L+RE+ RLI RSDR E E+N Sbjct: 7 DLFDQENLALAAARSTFESDTASSAQYREALGELINCYERLLRETSRLIRRSDREEFEMN 66 Query: 65 LLNSRLKQLSDELDYKARHDNLTGALNRGAVFDLAHRFLQDSSLSLIVLDIDFFKRINDE 124 LN+RL +L+ EL+Y+A HD LT ALNRGAV A++ ++ L++IVLDIDFFK++ND Sbjct: 67 QLNNRLNELASELEYRATHDALTNALNRGAVIAKANQIIRSQGLAIIVLDIDFFKQVNDS 126 Query: 125 FGHPAGDAVIRELVNRLRKSLDGKGEIGRVGGEEFTVLLRNASLDEAVQLAEKVRLTIAG 184 FGH GD VI +V + + L G +GRVGGEEFTVLL+++ +A +AE +R IAG Sbjct: 127 FGHLVGDKVICGVVEAVERCLPESGLVGRVGGEEFTVLLQDSDYTQAFTIAEHIRAEIAG 186 Query: 185 ELFSGLPSRPVTASFGVSWSKAGSDFENAYARADAALYKAKHGGRNRVER 234 FS R +TASFGVSW+ AG+ F AY AD ALYKAK GRNRV R Sbjct: 187 WDFSLPQPRQITASFGVSWTPAGASFSIAYGAADEALYKAKKAGRNRVMR 236