BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0360.p (1141 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001862475.1| signal transduction histidine kinase with Ch... 1142 0.0 ref|ZP_02382725.1| PAS [Burkholderia ubonensis Bu] 1140 0.0 ref|YP_003609827.1| signal transduction histidine kinase with Ch... 1134 0.0 ref|ZP_03265627.1| signal transduction histidine kinase with Che... 1124 0.0 ref|YP_002007465.1| chemotaxis methyltransferase protein; contai... 1123 0.0 >ref|YP_001862475.1| signal transduction histidine kinase with CheB and CheR activity [Burkholderia phymatum STM815] gb|ACC75429.1| signal transduction histidine kinase with CheB and CheR activity [Burkholderia phymatum STM815] Length = 1361 Score = 1142 bits (2954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 610/1155 (52%), Positives = 786/1155 (68%), Gaps = 37/1155 (3%) Query: 1 LISIMDLLRTRSGHDFSHYKKATVLRRIERRMQVSRTASLQEYFRYLTTHPDETPSLLQD 60 L IM +LRTR+GHDF HYK+ATVLRRIERRMQV+ LQ Y +L H DET +LLQD Sbjct: 226 LREIMVILRTRTGHDFRHYKRATVLRRIERRMQVNGITDLQAYRDHLHLHQDETQALLQD 285 Query: 61 MLISVTNFFRDRESFETLEREYIPAIFAGAEKGAPIRVWSAGCASGEEAYSLGMLLAEQR 120 MLISVTNFFRD+E+FE LERE +P +F G + IR WS GCA+GEEAYSL MLL E+ Sbjct: 286 MLISVTNFFRDKEAFEVLEREVLPQLFEGRGEQDRIRTWSVGCATGEEAYSLAMLLQERS 345 Query: 121 ALLNSSVDIQVFATDIDDRAISIARQGLYPESIVTDVAPGKLRQFFIREDGHYRIKKTLR 180 V QVFATDID+RAIS AR GLYP+SI+ DV+ ++RQFF ++ HYR+KK LR Sbjct: 346 LKSAEGVSFQVFATDIDERAISFARAGLYPDSILADVSTSRVRQFFSKDAAHYRVKKELR 405 Query: 181 EKVLFAAHNILRDPPFSRVHLISCRNLLIYLNREVQEKVFEMFHFALVPGGYLYLGSSES 240 E +LFA HN+L DPPFSR+ LI CRNLLIYL+RE Q ++ +MFHFAL PGG L+LGSSES Sbjct: 406 EHMLFAHHNVLSDPPFSRLDLICCRNLLIYLDREAQIEILKMFHFALRPGGVLFLGSSES 465 Query: 241 AEVASKYFTPVDKKNRIYRAVVMTHGAHYVPPLPYRRHGAPEIRNYIEVESRPAVR---Y 297 A+ S F+ +DK+NRIYRA + G P+P G R + P R + Sbjct: 466 ADSVSSMFSVIDKRNRIYRANMAVRGD---TPVPVAISGMASARPVVATVQPPGRRRFSF 522 Query: 298 AELHQRLIEQYAPPSVLINRTGEVVHVSKTAGIYLRYPTGEPSHDLVALIIPELRLELRT 357 +LHQRL+EQYAPPSVL++R E+VH+S AG +L+Y GEPSH++VA++ PELRLELRT Sbjct: 523 GDLHQRLVEQYAPPSVLVSRDSEIVHLSDRAGRFLQYSGGEPSHNIVAVVRPELRLELRT 582 Query: 358 ALFQVQQNNTNAETRQVSVERDGKRSNIALTLRIIPDEGLQNQFILILFNESATDEPIDH 417 A++Q N + E R+V +E +G+ + +T R + D F+L+LF+E ++ + Sbjct: 583 AIYQALHTNRSVEARRVRIEHEGRSYFVNMTARPVHDPEANADFVLVLFDE--VEDSMGG 640 Query: 418 HEESGTSF----IAKQLENELFITKGQLQTTIEQYETSAEELKASNEELQAINEELRSTT 473 E S + I QLE EL TK QLQ+TIEQ ETS EELKASNEELQAINEELRS T Sbjct: 641 SETSASDAQKDPIISQLERELQRTKEQLQSTIEQSETSTEELKASNEELQAINEELRSAT 700 Query: 474 EELETSKEELQSINEELITVNHELKMKVDETGKSNDDLQNFISATEIATIFVDRSMRIKR 533 EELETSKEELQSINEEL TVN ELK KV+ETGK NDDLQN I+A +I TIFVDR++ IKR Sbjct: 701 EELETSKEELQSINEELTTVNAELKSKVEETGKINDDLQNLIAANDIGTIFVDRNICIKR 760 Query: 534 YTPRSADIFKLIPTDVGRPLLDISHRLEYELLEEDAARVFETLRPCEREVKSDTGHRYIA 593 YTPR+ D+F +IP+D+GR LLDI+HRLEY+ L +DAA F++LR ERE+KS+ G Y+A Sbjct: 761 YTPRATDVFSIIPSDIGRSLLDITHRLEYDKLADDAAEAFDSLRLIERELKSNDGRWYLA 820 Query: 594 RLIPYRTNEDQISGLVLTFIDITSLHLAQSKLAAEELRMRVVAASTRDYAIITMDPTGKI 653 R +PYRT ED+I G VL+FIDIT A+ +L E RMR+VA T+DYAIIT D G + Sbjct: 821 RFVPYRTTEDRIDGAVLSFIDITGRRQAEDRLREGERRMRIVAEGTKDYAIITFDDEGLV 880 Query: 654 TFWNNGAERIFGYSEEEILGQHLDRIFTPEDRDNLVPAQELTTAKKEGHASDERWHLRKD 713 T WN GAERIFGY+E E++GQ D + T EDR + + E A+ G +ERWH+RKD Sbjct: 881 TSWNAGAERIFGYTEAEMIGQSADMLSTEEDRASNIAQAEFAEARLNGRTEEERWHVRKD 940 Query: 714 GTKVFCSGILTRLDDEEMTGYAKIARDLTSSKELETKREARLALETATRLKAEEAVRLRE 773 GT+ F SG+L+RLD+ ++G+AKIARDL + T E ET +A R R+ Sbjct: 941 GTRFFASGVLSRLDEAGVSGFAKIARDLGEFGHVATT-ERGSHTETLRAAAERDAQRRRD 999 Query: 774 EFLAVLSHELKHPLNLIQLNAELLKRIPLTQDQGKITRIADVIRSTVQTQAKIIDDLLDL 833 EFLAV+SHELKHPLNLI +AEL+ R P T+ I+R AD IR TV QA+IIDDLLD+ Sbjct: 1000 EFLAVVSHELKHPLNLISASAELIARAPETRQSLNISRAADTIRRTVIGQAQIIDDLLDI 1059 Query: 834 SRAQTGKLTLRKTLVDIVGITEKITRVFETDTQNKGIELRYQSAVPSLLVFGDTTRLEQI 893 SR +TGKL++ +T VD+ I +++ + D + +G+ L A +++ D TR+EQ+ Sbjct: 1060 SRVRTGKLSIIRTAVDMREIVQRVCNAVQDDARQRGLTLNVTMAESPVIIHADLTRVEQV 1119 Query: 894 LWNLLSNAVKFTPSGGKIFVTLGV-EGSNALITVSDSGKGISSHFLPHIFRMFEQA-DAV 951 +WNL+SNA+KFT + G + V+L V E A++ VSD+GKGI LPHIF MFEQ+ D V Sbjct: 1120 VWNLVSNAMKFT-NRGSVDVSLRVNEHGEAVLRVSDTGKGIEPSLLPHIFEMFEQSRDPV 1178 Query: 952 TTREHGGLGIGLALVRQLAESHGGRVEVESGGLEKGAKFSVWLPLY---------DGDHA 1002 T R GLGIGLALVR+L HGG V ES G+ +G+ F+V LP + DGD A Sbjct: 1179 TRR--SGLGIGLALVRELVNLHGGAVRAESEGVGRGSTFTVTLPTHRTLSYASGADGDAA 1236 Query: 1003 DAPLQPIDEDLDLLHGKTLLLIDDHIENLETLRDLLSSHGAIVTAKSSGVEALAETARRQ 1062 +D L G +L++DD ET + LL S GAIV +SG EALA Sbjct: 1237 ----------VDSLRGVRVLMVDDDAATTETFKLLLESEGAIVKTAASGEEALAMLNGDV 1286 Query: 1063 FDLVVSDIAMPKMDGYQFIALLRKQPQGSAVPVIALTGFGRAIDVQTAMESGFTAHLQKP 1122 D+V+SDI M MDG +F+ LR++P +V IAL+GFG+ DV+ A +GF AHL+KP Sbjct: 1287 PDVVLSDIGMHGMDGLEFVGKLREEPGLKSVICIALSGFGQEADVKMAENAGFDAHLKKP 1346 Query: 1123 IDLKNFAEIVKNIFH 1137 + L++ +V + H Sbjct: 1347 VMLEDLLHVVSRLRH 1361 >ref|ZP_02382725.1| PAS [Burkholderia ubonensis Bu] Length = 1361 Score = 1140 bits (2949), Expect = 0.0, Method: Compositional matrix adjust. Identities = 605/1148 (52%), Positives = 784/1148 (68%), Gaps = 28/1148 (2%) Query: 1 LISIMDLLRTRSGHDFSHYKKATVLRRIERRMQVSRTASLQEYFRYLTTHPDETPSLLQD 60 L IM +LRTR+ HDF HYK+ATVLRRIERR+QV+ LQ Y YL HPDET +LLQD Sbjct: 227 LREIMIILRTRTAHDFRHYKRATVLRRIERRLQVNGITDLQAYRDYLHLHPDETQALLQD 286 Query: 61 MLISVTNFFRDRESFETLEREYIPAIFAGAEKGAPIRVWSAGCASGEEAYSLGMLLAEQR 120 MLISVTNFFRD+E+F+ LERE +P +F G + IR WS GCA+GEEAYSL MLL E+ Sbjct: 287 MLISVTNFFRDKEAFDVLEREVLPQLFDGRSEQDRIRTWSVGCATGEEAYSLAMLLQERS 346 Query: 121 ALLNSSVDIQVFATDIDDRAISIARQGLYPESIVTDVAPGKLRQFFIREDGHYRIKKTLR 180 + + QVFATDID+RAIS AR GLYP+SI+ DV G++RQFF ++ HYRIKK LR Sbjct: 347 LKSSEGISFQVFATDIDERAISFARAGLYPDSILADVTAGRVRQFFSKDAAHYRIKKELR 406 Query: 181 EKVLFAAHNILRDPPFSRVHLISCRNLLIYLNREVQEKVFEMFHFALVPGGYLYLGSSES 240 E +LFA HN+L DPPFSR+ LI CRNLLIYL+RE Q ++ +MFHFAL PGG L+LGSSES Sbjct: 407 EHMLFAHHNVLSDPPFSRLDLICCRNLLIYLDREAQIEILKMFHFALRPGGVLFLGSSES 466 Query: 241 AEVASKYFTPVDKKNRIYRAVVMTHGAHYVPPLPYRRHGAPEIRNYIEVESRPAVR---Y 297 A+ S F+ +DK+NRIYRA V G P+P G R + P R + Sbjct: 467 ADSVSSMFSVIDKRNRIYRANVAVRGD---TPMPVAITGTTSARPVVATVQLPGRRRFSF 523 Query: 298 AELHQRLIEQYAPPSVLINRTGEVVHVSKTAGIYLRYPTGEPSHDLVALIIPELRLELRT 357 +LHQRL+EQYAPPSVL+NR E+VH+S AG +L+Y GEPSH+++A + PELRLELRT Sbjct: 524 GDLHQRLVEQYAPPSVLVNRDSEIVHLSDRAGRFLQYSGGEPSHNIIAAVRPELRLELRT 583 Query: 358 ALFQVQQNNTNAETRQVSVERDGKRSNIALTLRIIPDEGLQNQFILILFNE------SAT 411 A++Q N + E R+V +ERD + + +T R + D F+L+LF+E SA Sbjct: 584 AIYQALHTNRSVEARRVRIERDARSYFVNMTARPVHDPEANADFVLVLFDEVEDSMSSAD 643 Query: 412 DEPIDHHEESGTSFIAKQLENELFITKGQLQTTIEQYETSAEELKASNEELQAINEELRS 471 D ++ I QLE EL TK QLQ+TIEQ ETS EELKASNEELQAINEELRS Sbjct: 644 TATADTQKDP----IITQLERELQRTKEQLQSTIEQSETSTEELKASNEELQAINEELRS 699 Query: 472 TTEELETSKEELQSINEELITVNHELKMKVDETGKSNDDLQNFISATEIATIFVDRSMRI 531 TEELETSKEELQSINEEL TVN ELK KV+ETGK NDDLQN I+A +I TIFVDR++ I Sbjct: 700 ATEELETSKEELQSINEELTTVNAELKSKVEETGKINDDLQNLIAANDIGTIFVDRNICI 759 Query: 532 KRYTPRSADIFKLIPTDVGRPLLDISHRLEYELLEEDAARVFETLRPCEREVKSDTGHRY 591 KRYTPR+ D+F +IP+D+GR LLDI+HRLEY+ L +DAA F++LR ERE+KS+ G Y Sbjct: 760 KRYTPRATDVFSIIPSDIGRSLLDITHRLEYDKLADDAAEAFDSLRLIERELKSNDGRWY 819 Query: 592 IARLIPYRTNEDQISGLVLTFIDITSLHLAQSKLAAEELRMRVVAASTRDYAIITMDPTG 651 +AR +PYRT ED+I G VL+FIDIT A+ +L E RMR+VA T+DYAIIT D G Sbjct: 820 LARFVPYRTTEDRIDGAVLSFIDITDRRRAEDRLREGERRMRIVAEGTKDYAIITFDDDG 879 Query: 652 KITFWNNGAERIFGYSEEEILGQHLDRIFTPEDRDNLVPAQELTTAKKEGHASDERWHLR 711 IT WN GAERIFGY+E E++GQ D + T EDR V +E A+ G +ERWH R Sbjct: 880 VITSWNAGAERIFGYAEAEMIGQSADVLSTDEDRAGHVAEREFAEARANGRTEEERWHRR 939 Query: 712 KDGTKVFCSGILTRLDDEEMTGYAKIARDLTS-SKELETKREARLALETATRLKAEEAVR 770 KDGT+ F SG+L+RLD+ ++G+AKIARDL ++ + R+A+ +E ++A R Sbjct: 940 KDGTRFFASGVLSRLDEPGVSGFAKIARDLGEFAQAAKAGRDAQ--IEQLRVTGEQDAER 997 Query: 771 LREEFLAVLSHELKHPLNLIQLNAELLKRIPLTQDQGKITRIADVIRSTVQTQAKIIDDL 830 R+EFLAV+SHELK+PLNLI +AEL+ R P + I+R A+ IR TV QA+IIDDL Sbjct: 998 RRDEFLAVVSHELKNPLNLISASAELIARSPEARQSLNISRAAETIRRTVIGQAQIIDDL 1057 Query: 831 LDLSRAQTGKLTLRKTLVDIVGITEKITRVFETDTQNKGIELRYQSAVPSLLVFGDTTRL 890 LD+SR +TGKL++ +T VD+ I ++ + ++ +G+ L+ +++ D TR+ Sbjct: 1058 LDVSRVRTGKLSVVRTPVDMREIVRRVASAVQDESNQRGLALQVAITESPVIILADLTRI 1117 Query: 891 EQILWNLLSNAVKFTPSGGKIFVTLGVEG-SNALITVSDSGKGISSHFLPHIFRMFEQAD 949 EQ++WNL+SNA+KFT S G++ V+L V G + A++ V+D+G GI LPHIF MF Q+ Sbjct: 1118 EQVVWNLISNALKFT-SHGRVDVSLQVNGHAEAVLRVADTGSGIEPALLPHIFDMFRQSR 1176 Query: 950 AVTTREHGGLGIGLALVRQLAESHGGRVEVESGGLEKGAKFSVWLPLYDGDHADAPLQP- 1008 R GLGIGLALVR+L HGG V ES G +GA F+V LP + HADA Sbjct: 1177 DPAAR-RAGLGIGLALVRELVNLHGGTVRAESDGAGRGATFTVTLPTHRA-HADANAASG 1234 Query: 1009 -IDEDLDLLHGKTLLLIDDHIENLETLRDLLSSHGAIVTAKSSGVEALAETARRQFDLVV 1067 + E LHG +L++DD E +ET + LL S GAIV +SG +AL+ D+V+ Sbjct: 1235 ILAES---LHGVHILMVDDDTETVETFKLLLESEGAIVRTATSGEQALSMLDGNVPDVVL 1291 Query: 1068 SDIAMPKMDGYQFIALLRKQPQGSAVPVIALTGFGRAIDVQTAMESGFTAHLQKPIDLKN 1127 SDI MP MDG F+ LR+ P +V IAL+GFG+ DV+ A ++GF AHL+KP+ L+N Sbjct: 1292 SDIGMPGMDGLAFVGKLREAPAMKSVICIALSGFGQEADVRLAEQAGFDAHLKKPVTLEN 1351 Query: 1128 FAEIVKNI 1135 + + Sbjct: 1352 LQSVFSRL 1359 >ref|YP_003609827.1| signal transduction histidine kinase with CheB and CheR activity [Burkholderia sp. CCGE1002] gb|ADG20316.1| signal transduction histidine kinase with CheB and CheR activity [Burkholderia sp. CCGE1002] Length = 1360 Score = 1134 bits (2933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 602/1140 (52%), Positives = 775/1140 (67%), Gaps = 20/1140 (1%) Query: 1 LISIMDLLRTRSGHDFSHYKKATVLRRIERRMQVSRTASLQEYFRYLTTHPDETPSLLQD 60 L IM +LRTR+ HDF HYK+ATVLRRIERR+QV+ LQ Y YL HP+ET +LLQD Sbjct: 226 LREIMVILRTRTAHDFRHYKRATVLRRIERRLQVNGITDLQAYRDYLHLHPEETQALLQD 285 Query: 61 MLISVTNFFRDRESFETLEREYIPAIFAGAEKGAPIRVWSAGCASGEEAYSLGMLLAEQR 120 MLISVTNFFRD+E+F+ LERE +PA+F + IRVWS GCA+GEEAYSL MLL E+ Sbjct: 286 MLISVTNFFRDKEAFDVLEREVLPALFENRGEPDRIRVWSVGCATGEEAYSLAMLLQERS 345 Query: 121 ALLNSSVDIQVFATDIDDRAISIARQGLYPESIVTDVAPGKLRQFFIREDGHYRIKKTLR 180 V QVFATDID+RAIS AR GLYP+SI D+ P ++RQFF ++ H+RIKK LR Sbjct: 346 LKSPEGVSFQVFATDIDERAISFARIGLYPDSISADLTPARIRQFFTKDAAHFRIKKELR 405 Query: 181 EKVLFAAHNILRDPPFSRVHLISCRNLLIYLNREVQEKVFEMFHFALVPGGYLYLGSSES 240 E +LFA HN+L DPPFSR+ +I CRNLLIYL+RE Q ++ +MFHFAL PGG L+LGSSES Sbjct: 406 EHMLFAHHNVLSDPPFSRLDMICCRNLLIYLDREAQIEILKMFHFALRPGGVLFLGSSES 465 Query: 241 AEVASKYFTPVDKKNRIYRAVVMTHGAHYVPPLPYRRHGAPEIRNYIEVESRPAVR---Y 297 A+ S FT VDK+NRIYRA + G P+P G R + P R + Sbjct: 466 ADSVSSMFTVVDKRNRIYRANMAVRGD---TPVPIAISGTMSSRPLVTTVQPPGRRRFSF 522 Query: 298 AELHQRLIEQYAPPSVLINRTGEVVHVSKTAGIYLRYPTGEPSHDLVALIIPELRLELRT 357 +LHQRL+EQYAPPSVL++R E+VH+S AG +L+Y GEPSH++VA++ PELRLELRT Sbjct: 523 GDLHQRLVEQYAPPSVLVSRESEIVHLSDRAGRFLQYSGGEPSHNIVAVVRPELRLELRT 582 Query: 358 ALFQVQQNNTNAETRQVSVERDGKRSNIALTLRIIPDEGLQNQFILILFNESATDEPIDH 417 A++Q N + E R+V +ERDG+ + +T R + D F+L+LF+E ++ + + Sbjct: 583 AIYQALHTNRSVEARRVRIERDGRSYFVNMTARPVHDPEANADFVLVLFDE--VEDSMAN 640 Query: 418 HEESGTSF----IAKQLENELFITKGQLQTTIEQYETSAEELKASNEELQAINEELRSTT 473 E + I QLE EL TK QLQ+TIEQ ETS EELKASNEELQAINEELRS T Sbjct: 641 AETASVDVQKDPIISQLERELQRTKEQLQSTIEQSETSTEELKASNEELQAINEELRSAT 700 Query: 474 EELETSKEELQSINEELITVNHELKMKVDETGKSNDDLQNFISATEIATIFVDRSMRIKR 533 EELETSKEELQSINEEL TVN ELK KV+ETGK NDDL N I+A +I TIFVDR++ IKR Sbjct: 701 EELETSKEELQSINEELTTVNAELKSKVEETGKINDDLHNLIAANDIGTIFVDRNICIKR 760 Query: 534 YTPRSADIFKLIPTDVGRPLLDISHRLEYELLEEDAARVFETLRPCEREVKSDTGHRYIA 593 YTPR+ D+F +IP+D+GR LLDI+HRLEY+ L +DAA F++LR ERE+KS+ G Y+A Sbjct: 761 YTPRATDVFSIIPSDIGRSLLDITHRLEYDKLADDAAEAFDSLRLIERELKSNDGRWYLA 820 Query: 594 RLIPYRTNEDQISGLVLTFIDITSLHLAQSKLAAEELRMRVVAASTRDYAIITMDPTGKI 653 R +PYRT ED+I G VL+FIDIT A+ +L E RMR+VA T+DYAIIT D G I Sbjct: 821 RFVPYRTTEDRIDGAVLSFIDITGRRQAEDRLREGERRMRIVAEGTKDYAIITFDENGVI 880 Query: 654 TFWNNGAERIFGYSEEEILGQHLDRIFTPEDRDNLVPAQELTTAKKEGHASDERWHLRKD 713 WN GAERIFGYSE E++GQ D ++T EDR V +E A+ G A +ERWHLRKD Sbjct: 881 NSWNAGAERIFGYSEAEMIGQSADILYTDEDRAANVAKREFAEARLNGRAEEERWHLRKD 940 Query: 714 GTKVFCSGILTRLDDEEMTGYAKIARDLTSSKELETKREARLALETATRLKAEEAVRLRE 773 GT+ F SG+L+RLD+ ++G+AKI RDL T +ET EA R R+ Sbjct: 941 GTRFFASGVLSRLDEPGISGFAKITRDLGEFASDATSGRG-THVETLRAASEREAQRRRD 999 Query: 774 EFLAVLSHELKHPLNLIQLNAELLKRIPLTQDQGKITRIADVIRSTVQTQAKIIDDLLDL 833 EFLAV+SHELKHPLNLI +AEL+ R P T+ ++R D IR TV QA+IIDDLLD+ Sbjct: 1000 EFLAVVSHELKHPLNLISASAELIARAPETRQNLNVSRATDTIRRTVIGQAQIIDDLLDI 1059 Query: 834 SRAQTGKLTLRKTLVDIVGITEKITRVFETDTQNKGIELRYQSAVPSLLVFGDTTRLEQI 893 SR +TGKL++ +T+VD+ I +++ + D +GI L + +++ D TR+EQI Sbjct: 1060 SRVRTGKLSVVRTVVDMREIVQRVCSAVQDDAAQRGITLSVEVTDAPVIIHADLTRIEQI 1119 Query: 894 LWNLLSNAVKFTPSGGKIFVTLGV-EGSNALITVSDSGKGISSHFLPHIFRMFEQADAVT 952 +WNL+SNA+KFT G I V+L V + + A++ VSD+G GI + LPHIF MF+Q+ Sbjct: 1120 VWNLISNALKFTQR-GSIQVSLQVNDHAEAVLRVSDTGTGIEASLLPHIFEMFQQSRDPG 1178 Query: 953 TREHGGLGIGLALVRQLAESHGGRVEVESGGLEKGAKFSVWLPLYD-GDHADAPLQPIDE 1011 +R GGLGIGLALVR L HGG V ES G+ +GA F+V LP + A ++ E Sbjct: 1179 SR-RGGLGIGLALVRDLVNLHGGAVRAESDGVGRGATFTVTLPTHRLATRTSAGIEITGE 1237 Query: 1012 DLDLLHGKTLLLIDDHIENLETLRDLLSSHGAIVTAKSSGVEALAETARRQFDLVVSDIA 1071 L G +L++DD +ET + LL S GA V +SG EAL D+++SDI Sbjct: 1238 P---LKGTRILMVDDDAATVETFKLLLESEGAEVRTATSGEEALTIINGNAPDIILSDIG 1294 Query: 1072 MPKMDGYQFIALLRKQPQGSAVPVIALTGFGRAIDVQTAMESGFTAHLQKPIDLKNFAEI 1131 MP MDG +F+ LR P +V IA++GFG+ DV A ++GF AHL+KP+ L++ I Sbjct: 1295 MPGMDGMEFVGKLRGMPAMKSVICIAVSGFGQQADVSAAEDAGFDAHLKKPVVLEDLLSI 1354 >ref|ZP_03265627.1| signal transduction histidine kinase with CheB and CheR activity [Burkholderia sp. H160] gb|EEA02744.1| signal transduction histidine kinase with CheB and CheR activity [Burkholderia sp. H160] Length = 1360 Score = 1124 bits (2908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 602/1139 (52%), Positives = 774/1139 (67%), Gaps = 24/1139 (2%) Query: 1 LISIMDLLRTRSGHDFSHYKKATVLRRIERRMQVSRTASLQEYFRYLTTHPDETPSLLQD 60 L IM +LRTR+ HDF HYK+ATVLRRIERR+QV+ LQ Y YL HP+ET +LLQD Sbjct: 226 LREIMVILRTRTAHDFRHYKRATVLRRIERRLQVNGITDLQAYRDYLHLHPEETQALLQD 285 Query: 61 MLISVTNFFRDRESFETLEREYIPAIFAGAEKGAPIRVWSAGCASGEEAYSLGMLLAEQR 120 MLISVTNFFRD+E+F+ LERE +P +F + IRVWS GCA+GEEAYSL MLL E+ Sbjct: 286 MLISVTNFFRDKEAFDVLEREVLPPLFEHRGEQDRIRVWSVGCATGEEAYSLAMLLQERS 345 Query: 121 ALLNSSVDIQVFATDIDDRAISIARQGLYPESIVTDVAPGKLRQFFIREDGHYRIKKTLR 180 V QVFATDID+RAIS AR GLYP+SI D+ P ++RQFF ++ HYRIKK LR Sbjct: 346 LKSPEGVSFQVFATDIDERAISFARVGLYPDSISADLTPARIRQFFTKDAAHYRIKKELR 405 Query: 181 EKVLFAAHNILRDPPFSRVHLISCRNLLIYLNREVQEKVFEMFHFALVPGGYLYLGSSES 240 E +LFA HN+L DPPFSR+ +I CRNLLIYL+RE Q ++ MFHFAL PGG L+LGSSES Sbjct: 406 EHMLFAHHNVLSDPPFSRLDMICCRNLLIYLDREAQIEILRMFHFALRPGGILFLGSSES 465 Query: 241 AEVASKYFTPVDKKNRIYRAVVMTHGAHYVPPLPYRRHGAPEIRNYIEVESRPAVR---Y 297 A+ S FT VDK++RIYRA + G P+P G R + P R + Sbjct: 466 ADSVSSMFTVVDKRSRIYRANMAVRGD---TPVPIAISGTMSSRPVVTTLQPPGRRRFSF 522 Query: 298 AELHQRLIEQYAPPSVLINRTGEVVHVSKTAGIYLRYPTGEPSHDLVALIIPELRLELRT 357 +LHQRL+EQYAPPSVL++R E+VH+S AG +L+Y GEPSH++VA++ PELRLELRT Sbjct: 523 GDLHQRLVEQYAPPSVLVSRDSEIVHLSDRAGRFLQYSGGEPSHNIVAVVRPELRLELRT 582 Query: 358 ALFQVQQNNTNAETRQVSVERDGKRSNIALTLRIIPDEGLQNQFILILFNESATDEPIDH 417 A++Q N + E R+V +ER+G+ + +T R + D F+L+LF+E ++ + + Sbjct: 583 AIYQALHTNRSVEARRVRIEREGRSYFVNMTARPVHDPEANADFVLVLFDE--VEDSMGN 640 Query: 418 HEESGTSF----IAKQLENELFITKGQLQTTIEQYETSAEELKASNEELQAINEELRSTT 473 E + I QLE EL TK QLQ+TIEQ ETS EELKASNEELQAINEELRS T Sbjct: 641 AETASVDVQKDPIISQLERELQRTKEQLQSTIEQSETSTEELKASNEELQAINEELRSAT 700 Query: 474 EELETSKEELQSINEELITVNHELKMKVDETGKSNDDLQNFISATEIATIFVDRSMRIKR 533 EELETSKEELQSINEEL TVN ELK KV+ETGK NDDL N I+A +I TIFVDR++ IKR Sbjct: 701 EELETSKEELQSINEELTTVNAELKSKVEETGKINDDLHNLIAANDIGTIFVDRNICIKR 760 Query: 534 YTPRSADIFKLIPTDVGRPLLDISHRLEYELLEEDAARVFETLRPCEREVKSDTGHRYIA 593 YTPR+ D+F +IP+D+GR LLDI+HRLEY+ L +DAA F++LR ERE+KS G Y+A Sbjct: 761 YTPRATDVFSIIPSDIGRSLLDITHRLEYDKLADDAAEAFDSLRLIERELKSSDGRWYLA 820 Query: 594 RLIPYRTNEDQISGLVLTFIDITSLHLAQSKLAAEELRMRVVAASTRDYAIITMDPTGKI 653 R +PYRT ED+I G VL+FIDIT A+ +L E RMR+V STRDYAIIT D +G I Sbjct: 821 RFVPYRTTEDRIDGAVLSFIDITGRRQAEDRLREGERRMRIVGESTRDYAIITFDDSGVI 880 Query: 654 TFWNNGAERIFGYSEEEILGQHLDRIFTPEDRDNLVPAQELTTAKKEGHASDERWHLRKD 713 WN AERIFGYSE E++GQ + ++T EDR V +EL A+ G A +E WHLRKD Sbjct: 881 NSWNAAAERIFGYSEAEMIGQSAEILYTNEDRAANVAQRELAEARLNGRAEEECWHLRKD 940 Query: 714 GTKVFCSGILTRLDDEEMTGYAKIARDLTSSKELETKREARLALETATRLKAEE--AVRL 771 GT+ F SG+L+RLD+ ++G+AKI RDL E T + + A E A R Sbjct: 941 GTRFFASGVLSRLDEPGISGFAKITRDL---GEFATDPASGRGTHVESLRAASERDAQRR 997 Query: 772 REEFLAVLSHELKHPLNLIQLNAELLKRIPLTQDQGKITRIADVIRSTVQTQAKIIDDLL 831 R+EFLA++SHELKHPLNLI +AEL+ R P T+ ++R D IR TV QA+IIDDLL Sbjct: 998 RDEFLAIVSHELKHPLNLISASAELIARAPETRHNLNVSRATDTIRRTVIGQAQIIDDLL 1057 Query: 832 DLSRAQTGKLTLRKTLVDIVGITEKITRVFETDTQNKGIELRYQSAVPSLLVFGDTTRLE 891 D+SR +TGKL++ +T+VD+ I +++ + D +G+ LR + A ++V D TR+E Sbjct: 1058 DISRVRTGKLSVVRTVVDVREIVQRVCSAVQDDAAQRGVALRVELADTPVIVHADLTRIE 1117 Query: 892 QILWNLLSNAVKFTPSGGKIFVTLGV-EGSNALITVSDSGKGISSHFLPHIFRMFEQADA 950 QI+WNL+SNA+KFT G I V+L V + + A++ VSD+G GI LPHIF MF+Q+ Sbjct: 1118 QIVWNLISNALKFTQR-GTIDVSLQVNDHAEAVLRVSDTGSGIEPSLLPHIFDMFQQSRD 1176 Query: 951 VTTREHGGLGIGLALVRQLAESHGGRVEVESGGLEKGAKFSVWLPLYD-GDHADAPLQPI 1009 TR GGLGIGLALVR L HGG V ES G+ +GA F+V LP + A ++ Sbjct: 1177 PGTR-RGGLGIGLALVRDLVNLHGGAVRAESDGVGRGATFTVTLPTHRLARRTSAGIELT 1235 Query: 1010 DEDLDLLHGKTLLLIDDHIENLETLRDLLSSHGAIVTAKSSGVEALAETARRQFDLVVSD 1069 E L +H +L++DD +ET + LL S GA V +SG EAL D+++SD Sbjct: 1236 AESLKGMH---ILMVDDDSATVETFKLLLESEGAEVHTATSGEEALTIIDGNAPDVILSD 1292 Query: 1070 IAMPKMDGYQFIALLRKQPQGSAVPVIALTGFGRAIDVQTAMESGFTAHLQKPIDLKNF 1128 I MP MDG++FI LR P +V IA++GFG+ DV A E+GF AHL+KP+ L+ Sbjct: 1293 IGMPGMDGFEFIGKLRGMPAMKSVLCIAVSGFGQQADVSAAEEAGFDAHLRKPVVLEEL 1351 >ref|YP_002007465.1| chemotaxis methyltransferase protein; contains methylesterase domain (cheb), methylase of chemotaxis methyl-accepting proteins domain (cher), signal transduction histidine domain (nitrb), signal receiver (rec) domain [Cupriavidus taiwanensis LMG 19424] emb|CAQ71408.1| Putative chemotaxis methyltransferase protein; contains Methylesterase domain (CheB), Methylase of chemotaxis methyl-accepting proteins domain (CheR), signal transduction histidine domain (NitrB), signal receiver (Rec) domain [Cupriavidus taiwanensis LMG 19424] Length = 1373 Score = 1123 bits (2905), Expect = 0.0, Method: Compositional matrix adjust. Identities = 594/1145 (51%), Positives = 763/1145 (66%), Gaps = 35/1145 (3%) Query: 1 LISIMDLLRTRSGHDFSHYKKATVLRRIERRMQVSRTASLQEYFRYLTTHPDETPSLLQD 60 L IM +LRTR+ HDF HYK+ATVLRRIERR+QV+ LQ+Y YL HP+ETP+LLQD Sbjct: 231 LREIMVILRTRTSHDFRHYKRATVLRRIERRLQVNGLTDLQQYRDYLHLHPEETPALLQD 290 Query: 61 MLISVTNFFRDRESFETLEREYIPAIFAGAEKGAPIRVWSAGCASGEEAYSLGMLLAEQR 120 MLISVTNFFRD+E+F+ L + +P +F +G IR W+ GCA+GEEAYSL MLL E Sbjct: 291 MLISVTNFFRDKEAFDALRAQVLPQLFENRTEGEVIRAWTPGCATGEEAYSLAMLLHEAS 350 Query: 121 ALLNSSVDIQVFATDIDDRAISIARQGLYPESIVTDVAPGKLRQFFIREDGHYRIKKTLR 180 A V QVFATDID+RA++IAR GLYPE IV DV P ++RQFF +E H R++K LR Sbjct: 351 AQTAEQVRFQVFATDIDERAVAIARNGLYPEPIVADVDPARIRQFFTKEAAHLRVRKELR 410 Query: 181 EKVLFAAHNILRDPPFSRVHLISCRNLLIYLNREVQEKVFEMFHFALVPGGYLYLGSSES 240 E+VLFA HN+L DPPFSR+ LI CRNLLIY++R+ Q + FHFAL PGGYL+LG+SE+ Sbjct: 411 ERVLFALHNVLSDPPFSRLDLICCRNLLIYVDRDAQADILRTFHFALRPGGYLFLGNSEA 470 Query: 241 AEVASKYFTPVDKKNRIYRAVVMTHGAHYVPPLPYRRHGAPEIRNYIEVESRPAVR---Y 297 A+ S F+ VDKK RIYRA V P+P G RN + V P R + Sbjct: 471 ADSVSNLFSVVDKKARIYRANVAVRSD---TPMPMAIAGMAAARNPVSVLPAPGKRKFSF 527 Query: 298 AELHQRLIEQYAPPSVLINRTGEVVHVSKTAGIYLRYPTGEPSHDLVALIIPELRLELRT 357 +LHQRLIEQ+APPSVL++R E+VH+S AG +L+Y GEPSH+++A++ PELRLELRT Sbjct: 528 GDLHQRLIEQHAPPSVLVSRESEIVHLSDRAGRFLQYVGGEPSHNIIAVVRPELRLELRT 587 Query: 358 ALFQVQQNNTNAETRQVSVERDGKRSNIALTLRIIPDEGLQNQFILILFNE---SATDEP 414 A++Q Q N + E R+V +ERDGK + +T R + D F+L+LF+E S + P Sbjct: 588 AIYQALQTNHSVEARRVLLERDGKHFFVNMTARPVHDVEANGDFVLVLFDEVEDSMSAAP 647 Query: 415 IDHHEESGTSFIAKQLENELFITKGQLQTTIEQYETSAEELKASNEELQAINEELRSTTE 474 E IA QLE EL TK QLQ TIEQ ETS EELKASNEELQAINEELRS TE Sbjct: 648 TGQPGEERDPMIA-QLERELQRTKEQLQATIEQSETSTEELKASNEELQAINEELRSATE 706 Query: 475 ELETSKEELQSINEELITVNHELKMKVDETGKSNDDLQNFISATEIATIFVDRSMRIKRY 534 ELETSKEELQSINEEL TVN ELK KV+ETGK NDDLQN I+A +I T+FVDRSM IKRY Sbjct: 707 ELETSKEELQSINEELTTVNAELKSKVEETGKINDDLQNLITANDIGTVFVDRSMCIKRY 766 Query: 535 TPRSADIFKLIPTDVGRPLLDISHRLEYELLEEDAARVFETLRPCEREVKSDTGHRYIAR 594 TPR+ D+F +IP+D+GR LLDI+HRLEY+ L +DAA F++LR EREV+S+ G Y+AR Sbjct: 767 TPRAIDVFSIIPSDIGRSLLDITHRLEYDKLADDAAEAFDSLRLIEREVRSNDGRWYLAR 826 Query: 595 LIPYRTNEDQISGLVLTFIDITSLHLAQSKLAAEELRMRVVAASTRDYAIITMDPTGKIT 654 +PYRT ED+I G VL+FIDITS A+ +L E RM +VA STRDYAIIT D G++T Sbjct: 827 FLPYRTTEDRIDGAVLSFIDITSRRAAEERLREGEKRMNIVAESTRDYAIITFDDQGRVT 886 Query: 655 FWNNGAERIFGYSEEEILGQHLDRIFTPEDRDNLVPAQELTTAKKEGHASDERWHLRKDG 714 WN GAERIFG E ++LGQ + ++TPEDR VP +EL A+ G ++RWH+R+DG Sbjct: 887 SWNTGAERIFGVGEADMLGQPAETLYTPEDRAAGVPKEELAQARMYGRIEEDRWHVRRDG 946 Query: 715 TKVFCSGILTRLDDEEMTGYAKIARDLTSSKELE----TKREARLALETATRLKAEEAV- 769 ++ +G+L+RLD ++G+AKI RDL EL R A + TR E++ Sbjct: 947 SRFRSTGVLSRLDKGGVSGFAKILRDL---DELALTRIATRPASGSEVAGTRGPGNESLE 1003 Query: 770 ----RLREEFLAVLSHELKHPLNLIQLNAELLKRIPLTQDQGKITRIADVIRSTVQTQAK 825 RLR+EFLAV+SHELKHPLNLI +AEL+ R P + I R A IR TV QA Sbjct: 1004 GRAERLRDEFLAVVSHELKHPLNLISASAELISRAPDARASDVIQRAAATIRRTVMGQAH 1063 Query: 826 IIDDLLDLSRAQTGKLTLRKTLVDIVGITEKITRVFETDTQNKGIELRYQSAVPSLLVFG 885 IIDDLLD+SR +TGKL++ +D + +++ E + K I L +++ Sbjct: 1064 IIDDLLDMSRLRTGKLSIAHAPLDWAEVVDRVCSAIEEEVARKQIVLERSLPDGPVMIDA 1123 Query: 886 DTTRLEQILWNLLSNAVKFTPSGGKIFVTLGVEGSNALITVSDSGKGISSHFLPHIFRMF 945 D TR+EQI+WNL+SNA+K+T +GG I V+L A++ V D+G GI + LPHIF MF Sbjct: 1124 DLTRIEQIVWNLVSNAIKYTSAGGLINVSLTRTDGTAVLAVRDTGAGIDAQSLPHIFDMF 1183 Query: 946 EQADAVTTREHGGLGIGLALVRQLAESHGGRVEVESGGLEKGAKFSVWLP-----LYDGD 1000 Q A T R+ GGLGIGL+LVR+L GG V ES G KGA F+V P L + D Sbjct: 1184 RQGAAPTARK-GGLGIGLSLVRELVTIQGGTVRAESEGQGKGALFTVSFPVCANVLLNAD 1242 Query: 1001 HADAPLQPIDEDLDLLHGKTLLLIDDHIENLETLRDLLSSHGAIVTAKSSGVEALAETAR 1060 +P L T+LL+DD +ET + LL GA V+ +S +AL + Sbjct: 1243 ATQTSARP-------LQDTTILLVDDDSGTVETFKLLLEMEGARVSVATSAQDALRQLET 1295 Query: 1061 RQFDLVVSDIAMPKMDGYQFIALLRKQPQGSAVPVIALTGFGRAIDVQTAMESGFTAHLQ 1120 + DL++SDI MP MDG +FI +R + S + AL+G+GR D++ +M +GF AHL Sbjct: 1296 MRPDLLLSDIGMPDMDGLEFIKAIRNNERLSTLTAFALSGYGRPDDIRRSMHAGFDAHLT 1355 Query: 1121 KPIDL 1125 KP+ L Sbjct: 1356 KPVSL 1360