BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0356.p (294 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_996910.1| LysR family transcriptional regulator [Verminep... 529 e-148 ref|YP_001669488.1| LysR family transcriptional regulator [Pseud... 356 3e-96 ref|YP_728987.1| LysR family transcriptional regulator [Ralstoni... 311 7e-83 ref|YP_002007357.1| transcriptional regulator LysR family [Cupri... 310 1e-82 ref|YP_004680996.1| LysR family transcriptional regulator [Cupri... 307 1e-81 >ref|YP_996910.1| LysR family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gb|ABM57892.1| transcriptional regulator, LysR family [Verminephrobacter eiseniae EF01-2] Length = 294 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 256/294 (87%), Positives = 273/294 (92%), Gaps = 2/294 (0%) Query: 1 MYQYHKWIRSFHAVAKTRSFTAAATYLQIGQPTISEQVKALEDRFAVELLYRSGRHVELT 60 MYQYHKWIRSFHAVAKT SFTAAA+YL+IGQPTISEQVKALEDRFAVELL+RSGRHV LT Sbjct: 1 MYQYHKWIRSFHAVAKTHSFTAAASYLRIGQPTISEQVKALEDRFAVELLHRSGRHVALT 60 Query: 61 DAGQRLYEITEGIFGQEDEAVQLLQSLHSQKTGLLRIGAVSPPVVMNLTYDLMHRHPGIE 120 DAG+RLYEITEGIFGQEDEAVQLLQSLHSQKTGLLRIGAVSPPVVMNLTYDLM +HPGIE Sbjct: 61 DAGRRLYEITEGIFGQEDEAVQLLQSLHSQKTGLLRIGAVSPPVVMNLTYDLMRKHPGIE 120 Query: 121 FAISINSEKETLSRLYDFTIDIAILAYVDPDKRLYVIPYRTYPIVAVVRDDHAWANKASV 180 FAISIN EKETL RLYDF IDIAILAYVDPDKRL+V PYRTYPIVAVVRDDHAWA+KAS+ Sbjct: 121 FAISINPEKETLFRLYDFRIDIAILAYVDPDKRLHVAPYRTYPIVAVVRDDHAWASKASI 180 Query: 181 PLKQIQHEAIIMRESGSKTRELLEQACSKQDIRINCVMELNSREAIMHAIAEGLGIGFVA 240 PL QI+HEA+IMRESGSKTRELLE AC KQ I I+CVMELNSREAIMHAIAEGLGIGFV+ Sbjct: 181 PLTQIRHEAVIMRESGSKTRELLEHACGKQGIPIHCVMELNSREAIMHAIAEGLGIGFVS 240 Query: 241 EIEYTAIPGTKAIRLRDAQVNINYYMCALAVRKNRPLIKNVLDKGYEQKSSRKK 294 IEYTAIPGTKAIRLRDA+V I+YYMC LAVRKNRPLIK+VL+ E + RKK Sbjct: 241 AIEYTAIPGTKAIRLRDAEVKISYYMCTLAVRKNRPLIKSVLEA--ESEPGRKK 292 >ref|YP_001669488.1| LysR family transcriptional regulator [Pseudomonas putida GB-1] gb|ABY99152.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1] Length = 288 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 161/283 (56%), Positives = 215/283 (75%) Query: 1 MYQYHKWIRSFHAVAKTRSFTAAATYLQIGQPTISEQVKALEDRFAVELLYRSGRHVELT 60 MYQYHKW+RSFHAVA+T SFT AA L IGQPTISEQV LE RF VEL +R GR +EL+ Sbjct: 1 MYQYHKWLRSFHAVARTGSFTQAAELLSIGQPTISEQVSGLEKRFCVELFHRRGRFIELS 60 Query: 61 DAGQRLYEITEGIFGQEDEAVQLLQSLHSQKTGLLRIGAVSPPVVMNLTYDLMHRHPGIE 120 AG++LYEIT+G+FGQEDEA+QLLQS +K G+LRIGAVSPP+ M+LTY+LM R+P IE Sbjct: 61 PAGRQLYEITQGLFGQEDEALQLLQSFQQRKQGMLRIGAVSPPIAMSLTYELMQRYPQIE 120 Query: 121 FAISINSEKETLSRLYDFTIDIAILAYVDPDKRLYVIPYRTYPIVAVVRDDHAWANKASV 180 S +SE TL RLY+F ID+AILA + D+RL YRT PI+AVVRDDH WA +ASV Sbjct: 121 LETSFSSEAGTLERLYNFDIDLAILALSEFDQRLSTRLYRTCPILAVVRDDHPWARQASV 180 Query: 181 PLKQIQHEAIIMRESGSKTRELLEQACSKQDIRINCVMELNSREAIMHAIAEGLGIGFVA 240 +K I + +++RE+ S+TR+L+E+ C + + ++C M+LNSREAI+HA+ G+G+GFV+ Sbjct: 181 SVKDIAGQRVVLREAASRTRQLVEEGCRQHGVTLDCAMQLNSREAIVHAVVHGIGVGFVS 240 Query: 241 EIEYTAIPGTKAIRLRDAQVNINYYMCALAVRKNRPLIKNVLD 283 +EY PGT++I + +I+YY+C L +R+NR +I + D Sbjct: 241 AVEYADRPGTRSIAFAEDPFHIHYYLCCLGIRRNRAIIAELFD 283 >ref|YP_728987.1| LysR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ95622.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 288 Score = 311 bits (798), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 146/282 (51%), Positives = 197/282 (69%) Query: 1 MYQYHKWIRSFHAVAKTRSFTAAATYLQIGQPTISEQVKALEDRFAVELLYRSGRHVELT 60 +QY+K IR FHAVA+T FTAAA YL IGQPT+++QVKALE RF VEL R+GR V LT Sbjct: 2 FHQYYKSIRCFHAVARTGGFTAAAQYLHIGQPTVTDQVKALETRFGVELFLRAGRTVRLT 61 Query: 61 DAGQRLYEITEGIFGQEDEAVQLLQSLHSQKTGLLRIGAVSPPVVMNLTYDLMHRHPGIE 120 D G+RLY IT+G+FGQE EA+Q LQS H KTGL+R+GAVSPP+ + L H +E Sbjct: 62 DTGERLYAITQGLFGQEAEAMQFLQSAHKLKTGLVRVGAVSPPIALGLARSFRSTHASLE 121 Query: 121 FAISINSEKETLSRLYDFTIDIAILAYVDPDKRLYVIPYRTYPIVAVVRDDHAWANKASV 180 ++I SE L L DF ID+ ILA DP L++ PYR IVAV+ H A +AS+ Sbjct: 122 LTVTIGSEASVLRGLQDFDIDVGILAEPDPVDGLHIAPYRRERIVAVMPAGHPLAARASI 181 Query: 181 PLKQIQHEAIIMRESGSKTRELLEQACSKQDIRINCVMELNSREAIMHAIAEGLGIGFVA 240 ++++ EA+I+RE GSKTR +E+AC++ + +NCVME+NSREAI+HA+A G+GI FV Sbjct: 182 TVQEVAGEAVILREPGSKTRLRVERACAQHGVALNCVMEINSREAILHAVANGMGISFVT 241 Query: 241 EIEYTAIPGTKAIRLRDAQVNINYYMCALAVRKNRPLIKNVL 282 +IE +PG + + + + ++I+Y +C L VRK RPLI + Sbjct: 242 QIECIPLPGLQVVPVDEPLLSIDYSLCCLEVRKERPLIAALF 283 >ref|YP_002007357.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG 19424] emb|CAQ71298.1| putative Transcriptional Regulator, LysR family [Cupriavidus taiwanensis LMG 19424] Length = 290 Score = 310 bits (795), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 146/282 (51%), Positives = 197/282 (69%) Query: 1 MYQYHKWIRSFHAVAKTRSFTAAATYLQIGQPTISEQVKALEDRFAVELLYRSGRHVELT 60 +QY+K IR FHAVA+T FTAAA YL IGQPT+++QVKALE RF VEL RSGR V LT Sbjct: 2 FHQYYKSIRCFHAVARTGGFTAAAQYLHIGQPTVTDQVKALETRFGVELFLRSGRTVRLT 61 Query: 61 DAGQRLYEITEGIFGQEDEAVQLLQSLHSQKTGLLRIGAVSPPVVMNLTYDLMHRHPGIE 120 D G+RLY IT+G+FGQE+EA+Q L S H KTGL+R+GAVSPP+ + L H +E Sbjct: 62 DTGERLYAITQGLFGQEEEAMQFLHSAHKLKTGLVRVGAVSPPIALGLARSFRSAHAALE 121 Query: 121 FAISINSEKETLSRLYDFTIDIAILAYVDPDKRLYVIPYRTYPIVAVVRDDHAWANKASV 180 ++I SE L L DF ID+ I+A DP L++ PYR IVAV+ HA A +ASV Sbjct: 122 LTVTIGSEASVLRGLQDFDIDVGIVAEPDPVAGLHIAPYRRERIVAVMPAGHALAARASV 181 Query: 181 PLKQIQHEAIIMRESGSKTRELLEQACSKQDIRINCVMELNSREAIMHAIAEGLGIGFVA 240 L+ + E +I RE GSKTR+ +E+AC++ + ++CVME+NSREAI+HA+A G+G+ FV Sbjct: 182 TLQDLAGEPVIQREPGSKTRDRVERACAQHGMALHCVMEINSREAILHAVASGMGLSFVT 241 Query: 241 EIEYTAIPGTKAIRLRDAQVNINYYMCALAVRKNRPLIKNVL 282 +IE +PG + + + + ++I+Y +C LAVRK RPLI + Sbjct: 242 QIECIPLPGLQVVPVDEPLLSIDYSLCCLAVRKERPLISALF 283 >ref|YP_004680996.1| LysR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI79764.1| transcriptional regulator LysR family [Cupriavidus necator N-1] Length = 297 Score = 307 bits (787), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 144/282 (51%), Positives = 196/282 (69%) Query: 1 MYQYHKWIRSFHAVAKTRSFTAAATYLQIGQPTISEQVKALEDRFAVELLYRSGRHVELT 60 +QY+K IR FHAVA+T FTAAA YL IGQPT+++QVKALE RF VEL R+GR V LT Sbjct: 11 FHQYYKSIRCFHAVARTGGFTAAAQYLHIGQPTVTDQVKALETRFGVELFLRAGRTVRLT 70 Query: 61 DAGQRLYEITEGIFGQEDEAVQLLQSLHSQKTGLLRIGAVSPPVVMNLTYDLMHRHPGIE 120 D G+RLY IT+G+FGQE+EA+Q L S H KTGL+R+GAVSPP+ + L H +E Sbjct: 71 DTGERLYAITQGLFGQEEEAMQFLHSAHKLKTGLVRVGAVSPPIALGLARSFRTAHASLE 130 Query: 121 FAISINSEKETLSRLYDFTIDIAILAYVDPDKRLYVIPYRTYPIVAVVRDDHAWANKASV 180 ++I SE L L DF ID+ ILA DP + L++ PYR IVAV+ H A + S+ Sbjct: 131 LTVTIGSEASVLHGLQDFDIDVGILAEPDPVEGLHITPYRRERIVAVMPAGHPLAARPSI 190 Query: 181 PLKQIQHEAIIMRESGSKTRELLEQACSKQDIRINCVMELNSREAIMHAIAEGLGIGFVA 240 ++ + EA+I+RE GSKTR +E+AC++ + +NCVME+NSREAI+HA+A G+GI FV Sbjct: 191 TVQDVAGEAVIVREPGSKTRLRVERACAQHGVALNCVMEINSREAILHAVANGMGISFVT 250 Query: 241 EIEYTAIPGTKAIRLRDAQVNINYYMCALAVRKNRPLIKNVL 282 +IE +PG + + + + ++I+Y +C L VRK RPLI + Sbjct: 251 QIECIPLPGLQVVPVDEPLLSIDYSLCCLEVRKERPLIAALF 292