BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0348.p (266 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774008.1| transcription regulator protein [Herbaspiril... 387 e-105 ref|ZP_03269580.1| transcriptional regulator, IclR family [Burkh... 322 4e-86 ref|YP_003607397.1| transcriptional regulator, IclR family [Burk... 307 1e-81 ref|YP_550149.1| IclR family transcriptional regulator [Polaromo... 296 3e-78 ref|ZP_06686014.1| IclR family transcriptional regulator [Achrom... 249 4e-64 >ref|YP_003774008.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62100.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 184/257 (71%), Positives = 218/257 (84%) Query: 9 EDNPKIAGTAAFSKFMVVLQLIADQDEPLSIARLSALSGYPRPTVYRILAALTAEGMVVE 68 +D +IAGTAAFSKFMVVLQLIADQD PL+IA+L+ALSGYPRPTVYRILAAL AEGMVVE Sbjct: 9 DDAARIAGTAAFSKFMVVLQLIADQDAPLNIAQLAALSGYPRPTVYRILAALMAEGMVVE 68 Query: 69 NPRTRHFELGPRLINLASKSWSRSDVRTAAIDALQQLRDTTRETVHLAVPSDNGMVYIEK 128 NPR + +E+GPRLINLAS++W RSD+RT AI++L+QLRD TRETVHLAVPSD+ MVYIEK Sbjct: 69 NPRNKQYEVGPRLINLASRAWDRSDIRTTAIESLRQLRDLTRETVHLAVPSDHSMVYIEK 128 Query: 129 LESPQAVRMTSRVGTRVTLYSSSVGKAYLAALDEATRNRLLRSVRMQKFTEHTITDLDVL 188 LESPQAVRM SR+GTRVTLYSSSVGKAYLA L+EA R RL+R++ +Q FT +T T+L L Sbjct: 129 LESPQAVRMDSRIGTRVTLYSSSVGKAYLAGLEEAHRERLMRTLHLQAFTANTHTELAAL 188 Query: 189 RAELAVAQQRGYTEDREENEAQIFCVGAPIFGAEGTPVACISVSIPLFRKPAQLQQALID 248 RA++ + RGY EDREENEAQIFC GA I GA+G PVAC+SVSIPL+R+ QQA + Sbjct: 189 RADVEDTRARGYAEDREENEAQIFCYGAAIVGADGVPVACVSVSIPLYRRLPDAQQAYVQ 248 Query: 249 PLLSTCKLITQKLSGPG 265 PLL C I++KL+GPG Sbjct: 249 PLLQACATISRKLAGPG 265 >ref|ZP_03269580.1| transcriptional regulator, IclR family [Burkholderia sp. H160] gb|EDZ98833.1| transcriptional regulator, IclR family [Burkholderia sp. H160] Length = 282 Score = 322 bits (824), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 160/255 (62%), Positives = 189/255 (74%), Gaps = 1/255 (0%) Query: 10 DNPKIAGTAAFSKFMVVLQLIADQDEPLSIARLSALSGYPRPTVYRILAALTAEGMVVEN 69 D +AG AAFSKF+ VLQLIAD P +IA+LSA SGYPRPTV+RI+AAL AEG+VV Sbjct: 25 DTRAVAGAAAFSKFIAVLQLIADAQTPPNIAKLSAASGYPRPTVHRIVAALQAEGLVVAT 84 Query: 70 PRTRHFELGPRLINLASKSWSRSDVRTAAIDALQQLRDTTRETVHLAVPSDNGMVYIEKL 129 F LGPRLINLAS SW RSD+R AA+DAL QLRD T ET+HLAVPS MVYIEKL Sbjct: 85 AGGNTFGLGPRLINLASHSWERSDLRLAAVDALMQLRDLTSETIHLAVPSQGEMVYIEKL 144 Query: 130 ESPQAVRMTSRVGTRVTLYSSSVGKAYLAALDEATRNRLLRSVRMQKFTEHTITDLDVLR 189 ESP AVRM SR+GTRV+L SSSVGKAYLA L EA R LL+ +Q+FTEHT+TDLD +R Sbjct: 145 ESPHAVRMASRIGTRVSLTSSSVGKAYLATLSEAEREALLKDAPLQRFTEHTLTDLDAVR 204 Query: 190 AELAVAQQRGYTEDREENEAQIFCVGAPIFGAEGTPVACISVSIPLFRKPAQLQQALIDP 249 EL V QRG+ ED EENE I+C GA I G +G V C+S+S+P FR+ +Q A I+P Sbjct: 205 RELDVTAQRGHAEDHEENEVSIWCYGAAIRGPDGRAVGCVSISMPTFRRRDDVQAAYIEP 264 Query: 250 LLSTCKLITQKLSGP 264 LL+ C+ I +L GP Sbjct: 265 LLAACRTIAARL-GP 278 >ref|YP_003607397.1| transcriptional regulator, IclR family [Burkholderia sp. CCGE1002] gb|ADG17886.1| transcriptional regulator, IclR family [Burkholderia sp. CCGE1002] Length = 285 Score = 307 bits (786), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 151/255 (59%), Positives = 186/255 (72%), Gaps = 1/255 (0%) Query: 10 DNPKIAGTAAFSKFMVVLQLIADQDEPLSIARLSALSGYPRPTVYRILAALTAEGMVVEN 69 D+ +AG AAFSKF+ VLQLIAD P ++A+LSA SGYPRPTV+RI+AAL AEG+++ + Sbjct: 28 DSKAVAGAAAFSKFIAVLQLIADAPTPPNVAKLSAASGYPRPTVHRIVAALQAEGLIIAS 87 Query: 70 PRTRHFELGPRLINLASKSWSRSDVRTAAIDALQQLRDTTRETVHLAVPSDNGMVYIEKL 129 + LGPRLINLAS SW RSD+R AA+DAL LRD T ET+HLAVPS MVYIEKL Sbjct: 88 GSGNAYGLGPRLINLASHSWERSDLRLAAVDALTALRDLTSETIHLAVPSQGEMVYIEKL 147 Query: 130 ESPQAVRMTSRVGTRVTLYSSSVGKAYLAALDEATRNRLLRSVRMQKFTEHTITDLDVLR 189 ESP AVRM SR+GTRV+L SSSVGKAYLA L A R LL++ + +FTEHT+TDLD +R Sbjct: 148 ESPHAVRMASRIGTRVSLTSSSVGKAYLATLTVAEREALLKNAPLARFTEHTLTDLDDVR 207 Query: 190 AELAVAQQRGYTEDREENEAQIFCVGAPIFGAEGTPVACISVSIPLFRKPAQLQQALIDP 249 E+ QRGY EDREENE I C GA I G +G C+S+S+P FR+ +Q I+P Sbjct: 208 REIDATAQRGYAEDREENEDSICCYGAAIRGPDGRAAGCVSISMPTFRRRDDVQATYIEP 267 Query: 250 LLSTCKLITQKLSGP 264 LL+ C+ I +L GP Sbjct: 268 LLAACRTIAARL-GP 281 >ref|YP_550149.1| IclR family transcriptional regulator [Polaromonas sp. JS666] gb|ABE45251.1| transcriptional regulator, IclR family [Polaromonas sp. JS666] Length = 277 Score = 296 bits (757), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 145/250 (58%), Positives = 191/250 (76%) Query: 13 KIAGTAAFSKFMVVLQLIADQDEPLSIARLSALSGYPRPTVYRILAALTAEGMVVENPRT 72 ++AGTA+FSKFM VLQL+AD EPL++A L SGYPRPTV+RI+AAL AE ++VEN R+ Sbjct: 17 QVAGTASFSKFMHVLQLVADSTEPLNVAALMRASGYPRPTVHRIVAALLAERLLVENTRS 76 Query: 73 RHFELGPRLINLASKSWSRSDVRTAAIDALQQLRDTTRETVHLAVPSDNGMVYIEKLESP 132 LGPRLI LAS+SW RS++R AA+D L++LRD T ETVHLAVP+ MVYIEKLESP Sbjct: 77 ASLALGPRLIQLASRSWGRSELRLAAVDELKRLRDITGETVHLAVPNGTTMVYIEKLESP 136 Query: 133 QAVRMTSRVGTRVTLYSSSVGKAYLAALDEATRNRLLRSVRMQKFTEHTITDLDVLRAEL 192 AVRM SR+GT V+L+S++VGKAY+AALD AT N LL ++ M ++T T+T+L L+A+L Sbjct: 137 SAVRMASRIGTSVSLHSTAVGKAYMAALDAATLNPLLENLPMPRYTPSTVTELADLQAQL 196 Query: 193 AVAQQRGYTEDREENEAQIFCVGAPIFGAEGTPVACISVSIPLFRKPAQLQQALIDPLLS 252 V ++RG++ D EENEA IFC GA I G+ G PVA ISVS +FR+ +QA + PLL Sbjct: 197 RVTRERGWSVDSEENEAGIFCFGAAILGSRGVPVAAISVSTLIFRQKDNPEQAYVAPLLE 256 Query: 253 TCKLITQKLS 262 C+ I+ +++ Sbjct: 257 ACRAISARIA 266 >ref|ZP_06686014.1| IclR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF77089.1| IclR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 274 Score = 249 bits (635), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 135/239 (56%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 13 KIAGTAAFSKFMVVLQLIADQDEPLSIARLSALSGYPRPTVYRILAALTAEGMVVENPRT 72 K+AG AAF+KFM VLQ +AD EP + A L+ GYPRPTVYRI+AAL +GMV E Sbjct: 18 KVAGAAAFAKFMAVLQAVADAPEPPTAAALARSCGYPRPTVYRIVAALAEQGMVAET--G 75 Query: 73 RHFELGPRLINLASKSWSRSDVRTAAIDALQQLRDTTRETVHLAVPSDNGMVYIEKLESP 132 + LG RL++LAS++WS+ D+R A LQ LRD T ETVHLAVP+ + M+YI+KLESP Sbjct: 76 GAYRLGTRLMSLASRAWSQFDLRAALAPDLQALRDATGETVHLAVPAGHEMIYIDKLESP 135 Query: 133 QAVRMTSRVGTRVTLYSSSVGKAYLAALDEATRNRLLRSVRMQKFTEHTITDLDVLRAEL 192 VRM SRVG V L+SS+VGKAYLAALDEA R +LLRS+ + T+T L LRA L Sbjct: 136 GPVRMVSRVGASVALHSSAVGKAYLAALDEAPREQLLRSLPLPARMPGTVTSLPALRAVL 195 Query: 193 AVAQQRGYTEDREENEAQIFCVGAPIFGAEGTPVACISVSIPLFRKPAQLQQALIDPLL 251 A+ RGY D EENEA I C G + A G PVA +SVS LFR+ Q A IDPLL Sbjct: 196 DEARGRGYAMDDEENEAGIVCYGVALCDASGRPVAGVSVSTLLFRRQDNPQTAYIDPLL 254