BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0343.p (238 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774013.1| LysR family transcription regulator protein ... 344 7e-93 ref|YP_523781.1| LysR family transcriptional regulator [Rhodofer... 268 4e-70 ref|ZP_01894954.1| transcriptional regulator, LysR family protei... 267 8e-70 gb|EGW61098.1| transcriptional regulator, LysR family [Dechloros... 265 3e-69 ref|ZP_03269056.1| transcriptional regulator, LysR family [Burkh... 265 4e-69 >ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62105.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 344 bits (882), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 155/237 (65%), Positives = 191/237 (80%) Query: 1 VLYLDRCKQIVSALEDADQMLTAGNTDPAGLLRINVPQTFGVLHLVKVWPCLLQRYPGIK 60 LYL+RCKQIV+ALE+AD +L++G+ P GLLRIN P TFGVLHL +WP L+R+P I Sbjct: 63 ALYLERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPEIS 122 Query: 61 LDITLSDRIVDIIEEGYDMAIRIARLPSSSLIYRKLASTRIVVCASPEYLERHGTPLHPE 120 LDITLSDRIVDII+EGYDMAIRIARL S+L++RKL ST + VCASP YL+ HGTP HP Sbjct: 123 LDITLSDRIVDIIDEGYDMAIRIARLSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAHPH 182 Query: 121 DLKDHMVLGYSYSADKDEWHFDGPDGPVSVKTNVRMHANNGDTCVAAALAGIGITRQPTF 180 +L H + YSY+ KDEW F+GP+GPVSV+ + R+H NNGD+CV AAL GIGITRQPTF Sbjct: 183 ELAQHQTISYSYNQSKDEWQFNGPEGPVSVRVSSRLHVNNGDSCVQAALGGIGITRQPTF 242 Query: 181 MLNDHIRSGKLVRVMPDYTAVELGIYAVYPSRTHLPAKVRATIDFLVHAFEEVTWDD 237 M++ ++RSG+LV ++ DY A ELGIYAVYPSR HLPAK+RA +DFL AF +V W+D Sbjct: 243 MIDQYLRSGQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFLTEAFAQVHWND 299 >ref|YP_523781.1| LysR family transcriptional regulator [Rhodoferax ferrireducens T118] gb|ABD70250.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens T118] Length = 299 Score = 268 bits (686), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 126/217 (58%), Positives = 166/217 (76%), Gaps = 2/217 (0%) Query: 21 LTAGNTDPAGLLRINVPQTFGVLHLVKVWPCLLQRYPGIKLDITLSDRIVDIIEEGYDMA 80 +T+ + +GLLRIN P TFGVLHL +W R+P +KLD+TL+DR+VD++EEGYD+A Sbjct: 83 ITSRSDAASGLLRINAPFTFGVLHLAPLWGAFRVRHPNVKLDVTLADRLVDLVEEGYDVA 142 Query: 81 IRIARLPSSSLIYRKLASTRIVVCASPEYLERHGTPLHPEDLKDHMVLGYSYSADKDEWH 140 IRIA L +S+L+ ++LA+TR+V+CASP+YL+ HGTP HP +L DH V+ YSY + KDEW Sbjct: 143 IRIANLENSTLVSKRLATTRMVLCASPQYLKLHGTPKHPGELADHAVISYSYWSTKDEWP 202 Query: 141 FDGPDGPVSVKTNVRMHANNGDTCVAAALAGIGITRQPTFMLNDHIRSGKLVRVMPDYTA 200 F GP GPVSVKTN +H NNGDTC AAALA GI QP+F++ D + SG LV +MP++ + Sbjct: 203 FKGPLGPVSVKTNPCIHTNNGDTCRAAALASQGIILQPSFLVGDDLASGALVELMPEFRS 262 Query: 201 VELGIYAVYPSRTHLPAKVRATIDFLVHAFEE--VTW 235 +ELGIYAVYPSR H+ KVRA IDFL + F + +TW Sbjct: 263 LELGIYAVYPSRKHVSPKVRALIDFLTNHFSQPGMTW 299 >ref|ZP_01894954.1| transcriptional regulator, LysR family protein [Marinobacter algicola DG893] gb|EDM46979.1| transcriptional regulator, LysR family protein [Marinobacter algicola DG893] Length = 296 Score = 267 bits (683), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 123/233 (52%), Positives = 172/233 (73%), Gaps = 1/233 (0%) Query: 1 VLYLDRCKQIVSALEDADQMLTAGNTDPAGLLRINVPQTFGVLHLVKVWPCLLQRYPGIK 60 V Y+ RC+++++ +E+A+ LT+ + G+LRIN P +FG+ HL +W YP ++ Sbjct: 64 VFYV-RCRELLAGVEEAEAELTSRSGVAKGVLRINAPVSFGIRHLAPLWGQFHSEYPNVE 122 Query: 61 LDITLSDRIVDIIEEGYDMAIRIARLPSSSLIYRKLASTRIVVCASPEYLERHGTPLHPE 120 L+I LSDRIVDI+EEG+D+AIRIA L +S+L+ R+L +TR+VVCASPEYL HGTP HP Sbjct: 123 LNIDLSDRIVDIVEEGFDLAIRIASLRNSTLVSRRLTTTRLVVCASPEYLSAHGTPEHPG 182 Query: 121 DLKDHMVLGYSYSADKDEWHFDGPDGPVSVKTNVRMHANNGDTCVAAALAGIGITRQPTF 180 DL H ++ YS A ++WHFDGPDGP+S + MHANNG+TC AAA+AG G+ QP+F Sbjct: 183 DLIHHKIIAYSNLATGNDWHFDGPDGPLSTRIRPWMHANNGETCCAAAVAGQGVIHQPSF 242 Query: 181 MLNDHIRSGKLVRVMPDYTAVELGIYAVYPSRTHLPAKVRATIDFLVHAFEEV 233 ++ D + +G+LV +MPDY + ELG+YAVYP+R + KVRA +DFLV AF +V Sbjct: 243 LVQDDLDAGRLVELMPDYRSDELGVYAVYPTRKFVTPKVRALVDFLVSAFPDV 295 >gb|EGW61098.1| transcriptional regulator, LysR family [Dechlorosoma suillum PS] Length = 299 Score = 265 bits (678), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 125/236 (52%), Positives = 160/236 (67%) Query: 2 LYLDRCKQIVSALEDADQMLTAGNTDPAGLLRINVPQTFGVLHLVKVWPCLLQRYPGIKL 61 LYL+R KQI+ LEDAD + G L++N P +FGVLHL +W L +P + L Sbjct: 64 LYLERSKQILEELEDADSAVGLTTNRAVGQLKVNAPLSFGVLHLAPLWGAFLATHPEVSL 123 Query: 62 DITLSDRIVDIIEEGYDMAIRIARLPSSSLIYRKLASTRIVVCASPEYLERHGTPLHPED 121 D++L+DR+VD++EEGYD+A+RI RLP SSL+ R+LASTRI++CASP+YL HGTP D Sbjct: 124 DVSLNDRVVDLVEEGYDLAVRITRLPDSSLVSRRLASTRILLCASPQYLAAHGTPRTLAD 183 Query: 122 LKDHMVLGYSYSADKDEWHFDGPDGPVSVKTNVRMHANNGDTCVAAALAGIGITRQPTFM 181 L H +GYSYS D +GP G SV R HANNGDTC AAAL GI QPTF+ Sbjct: 184 LARHQFIGYSYSPSGDTLELEGPHGTESVNLRPRFHANNGDTCRAAALDHQGIVFQPTFL 243 Query: 182 LNDHIRSGKLVRVMPDYTAVELGIYAVYPSRTHLPAKVRATIDFLVHAFEEVTWDD 237 + + SG+LV ++P Y ELGIYAVYPSR HL KVRA ++FL AFE+ W++ Sbjct: 244 CHQDLASGRLVPILPQYKQRELGIYAVYPSRKHLSGKVRALVNFLATAFEQAPWEN 299 >ref|ZP_03269056.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gb|EDZ99348.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 303 Score = 265 bits (677), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 118/235 (50%), Positives = 167/235 (71%) Query: 2 LYLDRCKQIVSALEDADQMLTAGNTDPAGLLRINVPQTFGVLHLVKVWPCLLQRYPGIKL 61 L+ R + I++A++DA+ + + P+G +R+NVP +FG+ HL +W + YP I L Sbjct: 64 LFYQRARDILAAIDDAEAEVGSRTQVPSGSIRVNVPLSFGMSHLASIWGQFMAAYPQIDL 123 Query: 62 DITLSDRIVDIIEEGYDMAIRIARLPSSSLIYRKLASTRIVVCASPEYLERHGTPLHPED 121 DITL+DR+VD+++EGYD+A+RI+ LP SSL+ RKLA+T ++ CASP+YL R+G P HP + Sbjct: 124 DITLNDRVVDLVDEGYDLAVRISSLPDSSLVSRKLATTEMLTCASPDYLARNGMPSHPRN 183 Query: 122 LKDHMVLGYSYSADKDEWHFDGPDGPVSVKTNVRMHANNGDTCVAAALAGIGITRQPTFM 181 L +H VL Y+ ++DEW F+GP+G V V+T R+++NNGDTC A AL G GI QP+FM Sbjct: 184 LAEHRVLAYTGLTERDEWRFEGPEGEVVVRTRARVYSNNGDTCRAIALRGGGIILQPSFM 243 Query: 182 LNDHIRSGKLVRVMPDYTAVELGIYAVYPSRTHLPAKVRATIDFLVHAFEEVTWD 236 + + G+LVRV+P+Y + LGIYAVYPSR LP KVR +DFL AFE W Sbjct: 244 VAGDLERGQLVRVLPEYRSRALGIYAVYPSRKQLPLKVRCLVDFLAEAFEIAPWQ 298