BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0341.p (493 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776951.1| cytoplasmic axial filament ribonuclease G pr... 918 0.0 ref|ZP_08275491.1| Ribonuclease E [Oxalobacteraceae bacterium IM... 882 0.0 ref|YP_004751701.1| cytoplasmic axial filament protein CafA and ... 875 0.0 ref|YP_001352227.1| ribonuclease G (RNAse G) (cytoplasmic axial ... 861 0.0 ref|YP_001098884.1| RNase G [Herminiimonas arsenicoxydans] >gi|1... 861 0.0 >ref|YP_003776951.1| cytoplasmic axial filament ribonuclease G protein [Herbaspirillum seropedicae SmR1] gb|ADJ65043.1| cytoplasmic axial filament ribonuclease G protein [Herbaspirillum seropedicae SmR1] Length = 487 Score = 918 bits (2373), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/493 (90%), Positives = 464/493 (94%), Gaps = 6/493 (1%) Query: 1 MNEDILINITPQETRVALILQGAVQELHIERTLSRGLAGNVYLGKVVRVLPGMQSAFIDI 60 M+EDILINITPQETRVALILQGAVQELHIERTLSRGLAGN+YLGKVVRVLPGMQSAFIDI Sbjct: 1 MSEDILINITPQETRVALILQGAVQELHIERTLSRGLAGNIYLGKVVRVLPGMQSAFIDI 60 Query: 61 GLERAAFLHVADIWEAKPHDGQHGQHGQNVPQIPIEKLLFDGQTITVQVIKDPIGTKGAR 120 GLERAAFLHVADIWEA+ HDGQ N P IPIEKLL DGQ+ITVQVIKDPIGTKGAR Sbjct: 61 GLERAAFLHVADIWEARSHDGQ------NTPAIPIEKLLHDGQSITVQVIKDPIGTKGAR 114 Query: 121 LSTQISIAGRMLVYLPQDKHIGISQRIENEAEREQLRSKVQGLLPPEEKGGFIIRTMAED 180 LSTQISIAGRMLVYLPQDKHIGISQRIENEAERE LRSKVQ LLPPEEKGGFIIRTMAED Sbjct: 115 LSTQISIAGRMLVYLPQDKHIGISQRIENEAERELLRSKVQALLPPEEKGGFIIRTMAED 174 Query: 181 ASDADLQMDVEYLRKTWASIIAQTKTKPAPTLMYQDLSLAQRVLRDFVSDDTSNIQVDSR 240 ASDADLQMDVEYLRKTWA+I+ Q KT PAPTL++QDLSLAQRVLRDFV D T+ IQVDSR Sbjct: 175 ASDADLQMDVEYLRKTWATIVKQGKTNPAPTLLHQDLSLAQRVLRDFVGDHTATIQVDSR 234 Query: 241 ENFQMLQEFGTLYTPSVLPKLMHYRGERPLFDLYGVEEEIERALGRRVDLKSGGYLIVDQ 300 ENF MLQEFG +YTPSVL KL HYRGERPLFDLYGVEEEIERALGRRVDLKSGGYLIVDQ Sbjct: 235 ENFHMLQEFGAIYTPSVLTKLTHYRGERPLFDLYGVEEEIERALGRRVDLKSGGYLIVDQ 294 Query: 301 TEAMTTIDVNTGSFVNGRNFDDTIFKTNLEAAHAIARQLRLRNLGGIIILDFIDMENLEH 360 TEAMTTIDVNTGSFVNGRNFDDTIFKTNLEAAHAIARQLRLRNLGGIIILDFIDME+ EH Sbjct: 295 TEAMTTIDVNTGSFVNGRNFDDTIFKTNLEAAHAIARQLRLRNLGGIIILDFIDMESTEH 354 Query: 361 RTAVLSELNKALHRDRTKISVSGFSALGLVEMTRKRTRESLAHILCETCPACKGKGQVKT 420 R AVL+EL KAL RDRTKISVSGFS LGLVEMTRKRTRESLAHILCETCPACKG+GQVKT Sbjct: 355 RQAVLAELGKALQRDRTKISVSGFSTLGLVEMTRKRTRESLAHILCETCPACKGRGQVKT 414 Query: 421 SRTVCYEILREVLREAKQFNPREFRILAAQVVVDMFLEEESQHLAMLGDFIKKPISLQVQ 480 RTVCYEILREV+REAKQFNPREFRILA+QVVVDMFLEEESQHLAMLGDFI KPISLQVQ Sbjct: 415 PRTVCYEILREVMREAKQFNPREFRILASQVVVDMFLEEESQHLAMLGDFIGKPISLQVQ 474 Query: 481 TDYQQEQYDIILM 493 +DYQQEQYDIILM Sbjct: 475 SDYQQEQYDIILM 487 >ref|ZP_08275491.1| Ribonuclease E [Oxalobacteraceae bacterium IMCC9480] gb|EGF31035.1| Ribonuclease E [Oxalobacteraceae bacterium IMCC9480] Length = 487 Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/493 (86%), Positives = 455/493 (92%), Gaps = 6/493 (1%) Query: 1 MNEDILINITPQETRVALILQGAVQELHIERTLSRGLAGNVYLGKVVRVLPGMQSAFIDI 60 MNEDILINITPQETRVALILQGAVQELHIERTLSRG+AGN+YLGKV RVLPGMQSAFIDI Sbjct: 1 MNEDILINITPQETRVALILQGAVQELHIERTLSRGMAGNIYLGKVARVLPGMQSAFIDI 60 Query: 61 GLERAAFLHVADIWEAKPHDGQHGQHGQNVPQIPIEKLLFDGQTITVQVIKDPIGTKGAR 120 GLERAAFLHVADIWEA+ HDG P +PIEKLLFDG ITVQVIKDPIGTKGAR Sbjct: 61 GLERAAFLHVADIWEARSHDGP------ATPALPIEKLLFDGMAITVQVIKDPIGTKGAR 114 Query: 121 LSTQISIAGRMLVYLPQDKHIGISQRIENEAEREQLRSKVQGLLPPEEKGGFIIRTMAED 180 LSTQISIAGRMLVYLPQD HIGISQRIE E+ERE LR KVQ LLPPEEKGGFIIRTMAED Sbjct: 115 LSTQISIAGRMLVYLPQDSHIGISQRIEKESEREALRGKVQKLLPPEEKGGFIIRTMAED 174 Query: 181 ASDADLQMDVEYLRKTWASIIAQTKTKPAPTLMYQDLSLAQRVLRDFVSDDTSNIQVDSR 240 AS+ADLQMD++YLRKTW++I A K+KP +L++QDLSLAQRVLRDFV DDTS IQVDSR Sbjct: 175 ASEADLQMDIDYLRKTWSTIAASAKSKPPTSLLHQDLSLAQRVLRDFVGDDTSTIQVDSR 234 Query: 241 ENFQMLQEFGTLYTPSVLPKLMHYRGERPLFDLYGVEEEIERALGRRVDLKSGGYLIVDQ 300 ENF MLQ+FGT YTPSVL +L HY GERPLFDLYGVEEEI+RALGRRVDLKSGGYLIVDQ Sbjct: 235 ENFLMLQQFGTSYTPSVLTRLSHYTGERPLFDLYGVEEEIQRALGRRVDLKSGGYLIVDQ 294 Query: 301 TEAMTTIDVNTGSFVNGRNFDDTIFKTNLEAAHAIARQLRLRNLGGIIILDFIDMENLEH 360 TEAMTTIDVNTGS+VNGRNFDDTIFKTNLEAAHAIARQLRLRNLGGIIILDFIDMEN EH Sbjct: 295 TEAMTTIDVNTGSYVNGRNFDDTIFKTNLEAAHAIARQLRLRNLGGIIILDFIDMENAEH 354 Query: 361 RTAVLSELNKALHRDRTKISVSGFSALGLVEMTRKRTRESLAHILCETCPACKGKGQVKT 420 R +VLSEL+KAL RDRTK+SVSGFSALGLVEMTRKRTRESLA ILCETCPAC G+GQVKT Sbjct: 355 RASVLSELHKALARDRTKMSVSGFSALGLVEMTRKRTRESLARILCETCPACSGRGQVKT 414 Query: 421 SRTVCYEILREVLREAKQFNPREFRILAAQVVVDMFLEEESQHLAMLGDFIKKPISLQVQ 480 +RT+CYEILRE+LREAKQFNPREFRILA+Q+VVDMFLEEESQHLAMLGDFI KPISLQV+ Sbjct: 415 ARTICYEILRELLREAKQFNPREFRILASQIVVDMFLEEESQHLAMLGDFIGKPISLQVE 474 Query: 481 TDYQQEQYDIILM 493 T YQQEQYDIILM Sbjct: 475 TVYQQEQYDIILM 487 >ref|YP_004751701.1| cytoplasmic axial filament protein CafA and ribonuclease G [Collimonas fungivorans Ter331] gb|AEK60878.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Collimonas fungivorans Ter331] Length = 487 Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/493 (86%), Positives = 454/493 (92%), Gaps = 6/493 (1%) Query: 1 MNEDILINITPQETRVALILQGAVQELHIERTLSRGLAGNVYLGKVVRVLPGMQSAFIDI 60 M+EDIL+NITPQETRVALI QGAVQELHIERTLSRGLAGN+YLGKVVRVLPGMQSAFIDI Sbjct: 1 MSEDILVNITPQETRVALIFQGAVQELHIERTLSRGLAGNIYLGKVVRVLPGMQSAFIDI 60 Query: 61 GLERAAFLHVADIWEAKPHDGQHGQHGQNVPQIPIEKLLFDGQTITVQVIKDPIGTKGAR 120 GLERAAFLHVADIWE + HDGQ Q Q PIEK+LFDGQ++TVQV+KDPIGTKGAR Sbjct: 61 GLERAAFLHVADIWETRAHDGQAAQ------QTPIEKMLFDGQSLTVQVVKDPIGTKGAR 114 Query: 121 LSTQISIAGRMLVYLPQDKHIGISQRIENEAEREQLRSKVQGLLPPEEKGGFIIRTMAED 180 LSTQISIAGRMLVYLPQD+HIGISQRIENEAERE L+ KVQ LLPPEEKGGFIIRTMAED Sbjct: 115 LSTQISIAGRMLVYLPQDRHIGISQRIENEAERELLKDKVQKLLPPEEKGGFIIRTMAED 174 Query: 181 ASDADLQMDVEYLRKTWASIIAQTKTKPAPTLMYQDLSLAQRVLRDFVSDDTSNIQVDSR 240 AS+ADLQMD+EYLRKTW+SI K+KPAPTL++QDLSLAQRVLRDFV+D+T+ IQVDSR Sbjct: 175 ASEADLQMDIEYLRKTWSSITQLAKSKPAPTLLHQDLSLAQRVLRDFVNDETTTIQVDSR 234 Query: 241 ENFQMLQEFGTLYTPSVLPKLMHYRGERPLFDLYGVEEEIERALGRRVDLKSGGYLIVDQ 300 ENFQ LQEF YTPSV +L HY GERPLFDLYGVEEEI+ AL RRV LKSGGYLIVDQ Sbjct: 235 ENFQKLQEFAATYTPSVTARLTHYTGERPLFDLYGVEEEIQEALSRRVPLKSGGYLIVDQ 294 Query: 301 TEAMTTIDVNTGSFVNGRNFDDTIFKTNLEAAHAIARQLRLRNLGGIIILDFIDMENLEH 360 TEAMTTIDVNTGSFVNGRNFDDTIFKTNLEAAHAIARQLRLRNLGGIIILDFIDMEN EH Sbjct: 295 TEAMTTIDVNTGSFVNGRNFDDTIFKTNLEAAHAIARQLRLRNLGGIIILDFIDMENGEH 354 Query: 361 RTAVLSELNKALHRDRTKISVSGFSALGLVEMTRKRTRESLAHILCETCPACKGKGQVKT 420 ++AVL+EL+KAL RDRTK SVS FSALGLVEMTRKRTRESLAHILCE CPAC GKGQVKT Sbjct: 355 KSAVLAELHKALLRDRTKKSVSEFSALGLVEMTRKRTRESLAHILCEPCPACNGKGQVKT 414 Query: 421 SRTVCYEILREVLREAKQFNPREFRILAAQVVVDMFLEEESQHLAMLGDFIKKPISLQVQ 480 +RT+CYEILREVLREAKQFNPREFRILA+QVVVDMFLEEESQHLAMLGDFI+KPISLQV+ Sbjct: 415 ARTICYEILREVLREAKQFNPREFRILASQVVVDMFLEEESQHLAMLGDFIRKPISLQVE 474 Query: 481 TDYQQEQYDIILM 493 T Y QEQYDIILM Sbjct: 475 TVYPQEQYDIILM 487 >ref|YP_001352227.1| ribonuclease G (RNAse G) (cytoplasmic axial filament protein) [Janthinobacterium sp. Marseille] gb|ABR89103.1| ribonuclease G (RNAse G) (cytoplasmic axial filament protein) [Janthinobacterium sp. Marseille] Length = 487 Score = 861 bits (2225), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/493 (83%), Positives = 453/493 (91%), Gaps = 6/493 (1%) Query: 1 MNEDILINITPQETRVALILQGAVQELHIERTLSRGLAGNVYLGKVVRVLPGMQSAFIDI 60 M+EDIL+N+TPQETRVAL+LQGAVQELH+ERTLSRG+AGN+YLGKVVRVLPGMQSAF+DI Sbjct: 1 MSEDILVNVTPQETRVALVLQGAVQELHVERTLSRGMAGNIYLGKVVRVLPGMQSAFVDI 60 Query: 61 GLERAAFLHVADIWEAKPHDGQHGQHGQNVPQIPIEKLLFDGQTITVQVIKDPIGTKGAR 120 GLERAAFLHVADIW+A+ H+G PIE++L+DGQ +TVQVIKDPIGTKGAR Sbjct: 61 GLERAAFLHVADIWDARSHEGPPSS------PTPIERVLYDGQAVTVQVIKDPIGTKGAR 114 Query: 121 LSTQISIAGRMLVYLPQDKHIGISQRIENEAEREQLRSKVQGLLPPEEKGGFIIRTMAED 180 LSTQISIAGRMLVYLPQ+ HIGISQRIENE ERE LR KVQ L+ PEEKGGFIIRTMAED Sbjct: 115 LSTQISIAGRMLVYLPQESHIGISQRIENEVEREILREKVQKLILPEEKGGFIIRTMAED 174 Query: 181 ASDADLQMDVEYLRKTWASIIAQTKTKPAPTLMYQDLSLAQRVLRDFVSDDTSNIQVDSR 240 ASD DLQ DVEYLRKTWA+I Q KTKPAPTL+YQDL LAQRV+RDFV+D+T++IQVDSR Sbjct: 175 ASDGDLQADVEYLRKTWANITQQAKTKPAPTLLYQDLDLAQRVMRDFVNDETASIQVDSR 234 Query: 241 ENFQMLQEFGTLYTPSVLPKLMHYRGERPLFDLYGVEEEIERALGRRVDLKSGGYLIVDQ 300 EN+Q L +FG LYTPSVL KL HY GERPLFDLYGVEEEI+RALGRRVDLKSGGYLIVDQ Sbjct: 235 ENYQKLLQFGELYTPSVLSKLAHYPGERPLFDLYGVEEEIQRALGRRVDLKSGGYLIVDQ 294 Query: 301 TEAMTTIDVNTGSFVNGRNFDDTIFKTNLEAAHAIARQLRLRNLGGIIILDFIDMENLEH 360 TEAMTTIDVNTGSFVNGRNFDDTIFKTNLEA+HAIARQLRLRNLGGI+ILDFIDMEN EH Sbjct: 295 TEAMTTIDVNTGSFVNGRNFDDTIFKTNLEASHAIARQLRLRNLGGIMILDFIDMENPEH 354 Query: 361 RTAVLSELNKALHRDRTKISVSGFSALGLVEMTRKRTRESLAHILCETCPACKGKGQVKT 420 ++AVL+ELN+AL RDRTK+SVSGFSALGLVEMTRKRTRESLAHILCE CPAC GKGQVKT Sbjct: 355 KSAVLNELNRALSRDRTKVSVSGFSALGLVEMTRKRTRESLAHILCEPCPACSGKGQVKT 414 Query: 421 SRTVCYEILREVLREAKQFNPREFRILAAQVVVDMFLEEESQHLAMLGDFIKKPISLQVQ 480 +RT+CYEILRE+ REAKQFNPREFRILA+QVV+DMFLEEESQHLAMLGDF+ KPISLQV+ Sbjct: 415 ARTICYEILRELTREAKQFNPREFRILASQVVIDMFLEEESQHLAMLGDFLGKPISLQVE 474 Query: 481 TDYQQEQYDIILM 493 T Y QEQYD+ILM Sbjct: 475 TVYHQEQYDVILM 487 >ref|YP_001098884.1| RNase G [Herminiimonas arsenicoxydans] emb|CAL60757.1| RNase G (ribonuclease G) [Herminiimonas arsenicoxydans] Length = 487 Score = 861 bits (2225), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/493 (84%), Positives = 454/493 (92%), Gaps = 6/493 (1%) Query: 1 MNEDILINITPQETRVALILQGAVQELHIERTLSRGLAGNVYLGKVVRVLPGMQSAFIDI 60 M+EDIL+N+TPQETRVAL+LQGAVQELHIERTLSRG+AGN+YLGKVVRVLPGMQSAFIDI Sbjct: 1 MSEDILVNVTPQETRVALVLQGAVQELHIERTLSRGMAGNIYLGKVVRVLPGMQSAFIDI 60 Query: 61 GLERAAFLHVADIWEAKPHDGQHGQHGQNVPQIPIEKLLFDGQTITVQVIKDPIGTKGAR 120 GLERAAFLHVADIW+A+ HDG P IPIE++LFDGQ+ITVQVIKDPIGTKGAR Sbjct: 61 GLERAAFLHVADIWDARSHDGL-----PTTP-IPIERILFDGQSITVQVIKDPIGTKGAR 114 Query: 121 LSTQISIAGRMLVYLPQDKHIGISQRIENEAEREQLRSKVQGLLPPEEKGGFIIRTMAED 180 LSTQISIAGRMLVYLPQ+ HIGISQRIENE ERE LR KVQ L+ EKGGFIIRTMAED Sbjct: 115 LSTQISIAGRMLVYLPQESHIGISQRIENEVERELLREKVQKLMQEGEKGGFIIRTMAED 174 Query: 181 ASDADLQMDVEYLRKTWASIIAQTKTKPAPTLMYQDLSLAQRVLRDFVSDDTSNIQVDSR 240 ASD DLQMDV+YLRKTW++I KTKPAP+L+YQDL LAQRV+RDFV+D+T++IQVDSR Sbjct: 175 ASDHDLQMDVDYLRKTWSNITQLAKTKPAPSLLYQDLDLAQRVMRDFVNDETASIQVDSR 234 Query: 241 ENFQMLQEFGTLYTPSVLPKLMHYRGERPLFDLYGVEEEIERALGRRVDLKSGGYLIVDQ 300 ENFQ LQ+FG LYTPSVL KL HY GERPLFDLYGVEEEI+RALGRRVDLKSGGYLIVDQ Sbjct: 235 ENFQKLQQFGELYTPSVLTKLAHYPGERPLFDLYGVEEEIQRALGRRVDLKSGGYLIVDQ 294 Query: 301 TEAMTTIDVNTGSFVNGRNFDDTIFKTNLEAAHAIARQLRLRNLGGIIILDFIDMENLEH 360 TEAMTTIDVNTGSFVNGRNFDDTIFKTNLEA+HAIARQLRLRNLGG++ILDFIDMEN+EH Sbjct: 295 TEAMTTIDVNTGSFVNGRNFDDTIFKTNLEASHAIARQLRLRNLGGMVILDFIDMENVEH 354 Query: 361 RTAVLSELNKALHRDRTKISVSGFSALGLVEMTRKRTRESLAHILCETCPACKGKGQVKT 420 R AVLSELN+AL RDRTK+SVSGFSALGLVEMTRKRTRESLAHILCE CPAC GKGQVKT Sbjct: 355 RNAVLSELNRALARDRTKVSVSGFSALGLVEMTRKRTRESLAHILCEPCPACGGKGQVKT 414 Query: 421 SRTVCYEILREVLREAKQFNPREFRILAAQVVVDMFLEEESQHLAMLGDFIKKPISLQVQ 480 +RT+CYEILRE+ REAKQFNPREFRILA+QVV+DMFLEEESQHLAMLGDF+ KPISLQV+ Sbjct: 415 ARTICYEILRELTREAKQFNPREFRILASQVVIDMFLEEESQHLAMLGDFLGKPISLQVE 474 Query: 481 TDYQQEQYDIILM 493 Y QEQYD+ILM Sbjct: 475 AVYHQEQYDVILM 487