BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0339.p (156 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001352229.1| rRNA large subunit methyltransferase [Janthi... 288 2e-76 ref|YP_003776949.1| hypothetical protein Hsero_3562 [Herbaspiril... 283 6e-75 ref|YP_001098886.1| rRNA large subunit methyltransferase [Hermin... 282 9e-75 ref|ZP_08275493.1| LSU m3Psi1915 methyltransferase RlmH [Oxaloba... 280 7e-74 ref|YP_004751703.1| hypothetical protein CFU_1048 [Collimonas fu... 277 4e-73 >ref|YP_001352229.1| rRNA large subunit methyltransferase [Janthinobacterium sp. Marseille] sp|A6SVD2.1|RLMH_JANMA RecName: Full=Ribosomal RNA large subunit methyltransferase H; AltName: Full=23S rRNA m3Psi1915 methyltransferase; AltName: Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH gb|ABR89862.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 156 Score = 288 bits (736), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 133/156 (85%), Positives = 146/156 (93%) Query: 1 MQLIITAVGHKMPGWIESGFNEYAKRMPAECRVLLKEIKPIERSGSRTAETVMSQERSKI 60 MQL+I AVGHKMP WIESGF EYAKRMPA+CRV LKEIKP+ERSGS+TAET M+ ER+KI Sbjct: 1 MQLVIAAVGHKMPAWIESGFGEYAKRMPADCRVHLKEIKPVERSGSKTAETAMALERAKI 60 Query: 61 EAALPKGARIVALDEHGKDITSMQLSQLLTQWQQDGRDVAFVIGGADGLDPGLKANADML 120 EAALPKGARI+ALDEHGKD+TS+QL+QLLTQWQQDGRDVAF+IGGADGLD K NADML Sbjct: 61 EAALPKGARIIALDEHGKDLTSVQLAQLLTQWQQDGRDVAFIIGGADGLDAEFKKNADML 120 Query: 121 VRISSLTLPHGMVRVLLAEQLYRAWSITQNHPYHRV 156 +RISS+TLPHGMVRVLLAEQLYRAWSITQNHPYHRV Sbjct: 121 IRISSMTLPHGMVRVLLAEQLYRAWSITQNHPYHRV 156 >ref|YP_003776949.1| hypothetical protein Hsero_3562 [Herbaspirillum seropedicae SmR1] gb|ADJ65041.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 156 Score = 283 bits (724), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 130/155 (83%), Positives = 143/155 (92%) Query: 1 MQLIITAVGHKMPGWIESGFNEYAKRMPAECRVLLKEIKPIERSGSRTAETVMSQERSKI 60 MQL+I AVGHKMP WIE+GF EYAKRMP ECR++LKEIKP+ERSGSRTAETVM+QER KI Sbjct: 1 MQLVIAAVGHKMPAWIETGFQEYAKRMPPECRIILKEIKPVERSGSRTAETVMAQEREKI 60 Query: 61 EAALPKGARIVALDEHGKDITSMQLSQLLTQWQQDGRDVAFVIGGADGLDPGLKANADML 120 EAALPKGAR++ALDE G+D TS+QLSQ L QWQQDGRDVAFVIGGADGLDPG KA AD L Sbjct: 61 EAALPKGARVIALDERGRDWTSVQLSQQLVQWQQDGRDVAFVIGGADGLDPGFKAGADTL 120 Query: 121 VRISSLTLPHGMVRVLLAEQLYRAWSITQNHPYHR 155 +RISS+TLPHGMVRV+LAEQLYRAWSITQNHPYHR Sbjct: 121 IRISSMTLPHGMVRVMLAEQLYRAWSITQNHPYHR 155 >ref|YP_001098886.1| rRNA large subunit methyltransferase [Herminiimonas arsenicoxydans] sp|A4G2M2.1|RLMH_HERAR RecName: Full=Ribosomal RNA large subunit methyltransferase H; AltName: Full=23S rRNA m3Psi1915 methyltransferase; AltName: Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH emb|CAL60759.1| putative methyltransferase [Herminiimonas arsenicoxydans] Length = 156 Score = 282 bits (722), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 129/156 (82%), Positives = 144/156 (92%) Query: 1 MQLIITAVGHKMPGWIESGFNEYAKRMPAECRVLLKEIKPIERSGSRTAETVMSQERSKI 60 MQL+I AVGHKMP WIE+GF EYAKRMP +CR+ LKEIKP+ERSGS+TAET M+ ER+KI Sbjct: 1 MQLVIAAVGHKMPAWIENGFGEYAKRMPPDCRIHLKEIKPVERSGSKTAETAMALERAKI 60 Query: 61 EAALPKGARIVALDEHGKDITSMQLSQLLTQWQQDGRDVAFVIGGADGLDPGLKANADML 120 EAA+PKGARI+ALDEHGKD+TS+QL+QLLTQWQQDGRDV FVIGGADGLDP K ADML Sbjct: 61 EAAVPKGARIIALDEHGKDVTSVQLAQLLTQWQQDGRDVTFVIGGADGLDPDFKKKADML 120 Query: 121 VRISSLTLPHGMVRVLLAEQLYRAWSITQNHPYHRV 156 +RISSLTLPHGMVRV+LAEQLYRAWSITQNHPYHRV Sbjct: 121 IRISSLTLPHGMVRVMLAEQLYRAWSITQNHPYHRV 156 >ref|ZP_08275493.1| LSU m3Psi1915 methyltransferase RlmH [Oxalobacteraceae bacterium IMCC9480] gb|EGF31037.1| LSU m3Psi1915 methyltransferase RlmH [Oxalobacteraceae bacterium IMCC9480] Length = 156 Score = 280 bits (715), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 129/156 (82%), Positives = 143/156 (91%) Query: 1 MQLIITAVGHKMPGWIESGFNEYAKRMPAECRVLLKEIKPIERSGSRTAETVMSQERSKI 60 MQLII AVGHKMP WIE+GF EYAKRMP ECR+ LKEIKP+ERSGS+TAET M+ ER++I Sbjct: 1 MQLIIAAVGHKMPAWIETGFGEYAKRMPPECRLHLKEIKPVERSGSKTAETAMALERTRI 60 Query: 61 EAALPKGARIVALDEHGKDITSMQLSQLLTQWQQDGRDVAFVIGGADGLDPGLKANADML 120 EA LPKG RI+ALDEHG+D+TS+QLSQ LT WQQDGRDVAF+IGGADGLDP KANADML Sbjct: 61 EAVLPKGTRIIALDEHGRDLTSVQLSQQLTSWQQDGRDVAFIIGGADGLDPHFKANADML 120 Query: 121 VRISSLTLPHGMVRVLLAEQLYRAWSITQNHPYHRV 156 +RISSLTLPHGMVRV+LAEQLYRAWSITQNHPYHRV Sbjct: 121 LRISSLTLPHGMVRVVLAEQLYRAWSITQNHPYHRV 156 >ref|YP_004751703.1| hypothetical protein CFU_1048 [Collimonas fungivorans Ter331] gb|AEK60880.1| hypothetical protein CFU_1048 [Collimonas fungivorans Ter331] Length = 156 Score = 277 bits (708), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 130/156 (83%), Positives = 142/156 (91%) Query: 1 MQLIITAVGHKMPGWIESGFNEYAKRMPAECRVLLKEIKPIERSGSRTAETVMSQERSKI 60 MQLII AVGHKMP WIESGF EYAKRMP +CR++LKEIKP+ERSGS+TAET M+ ERS+I Sbjct: 1 MQLIIAAVGHKMPAWIESGFGEYAKRMPPDCRIVLKEIKPVERSGSKTAETAMALERSRI 60 Query: 61 EAALPKGARIVALDEHGKDITSMQLSQLLTQWQQDGRDVAFVIGGADGLDPGLKANADML 120 EA LPKG RIVALDE GKD+TS+QLSQ LTQWQ+DGRDVAF+IGGADGLDP KA AD L Sbjct: 61 EAVLPKGVRIVALDERGKDLTSVQLSQQLTQWQRDGRDVAFIIGGADGLDPEFKAGADSL 120 Query: 121 VRISSLTLPHGMVRVLLAEQLYRAWSITQNHPYHRV 156 +RISSLTLPHGMVRVLLAEQLYRAWSITQNHPYHRV Sbjct: 121 LRISSLTLPHGMVRVLLAEQLYRAWSITQNHPYHRV 156