BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0330.p (442 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004750858.1| SNF2-like protein [Collimonas fungivorans Te... 451 e-124 ref|ZP_08273604.1| DNA helicase, SNF2/RAD54 family [Oxalobactera... 449 e-124 ref|YP_003777961.1| superfamily II helicase [Herbaspirillum sero... 389 e-106 ref|YP_004234887.1| SNF2-like protein [Acidovorax avenae subsp. ... 387 e-105 ref|YP_971175.1| SNF2-like protein [Acidovorax citrulli AAC00-1]... 379 e-103 >ref|YP_004750858.1| SNF2-like protein [Collimonas fungivorans Ter331] gb|AEK60035.1| SNF2-like protein [Collimonas fungivorans Ter331] Length = 827 Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust. Identities = 253/474 (53%), Positives = 308/474 (64%), Gaps = 66/474 (13%) Query: 12 MPDESEVLGRFRPRLTLQTFTRGDGVLGLRPGGLFGPRGGNVTVAQVDWTY--------- 62 M + +GRFRPRLTLQT RGDG+LG+RP G FGPRG NVTV Q+ WTY Sbjct: 1 MNSAASAVGRFRPRLTLQTLGRGDGLLGMRPSGPFGPRGPNVTVVQISWTYVTDDGLQWE 60 Query: 63 ----------------QAXTSRWRRSI--NLHAEADALEAIQAAGLLPLPADALQWRAD- 103 + RR + +L AEADAL+ + GL PLPAD LQWR D Sbjct: 61 TAAPTALLNRRPPSSQTVEDEQGRRLLLRDLGAEADALDLVWDLGLYPLPADTLQWRTDI 120 Query: 104 ---DMATIDGQLWSLLLENNFGDFWADRVPELQQQGWSIVVRPGFAHESVPVESWRVIVS 160 D A LW+L+ E+ FGDFWA+++P LQ +GW+IVVRPGFAHESVPV++WR+IV+ Sbjct: 121 AAQDAAQTLDSLWTLVQEDFFGDFWAEQLPGLQAKGWAIVVRPGFAHESVPVDAWRLIVN 180 Query: 161 PESGAVLGKEVASALQQGRTKIIGDFSEPGRAAWWLLTMGVEIEGQFFDLTPMLADLLRR 220 P +GA+LGKEVA+ ++ GR + + P WLLT+G+EI+G+ DL P+LA LL+R Sbjct: 181 PATGALLGKEVAARMR-GREQAVTALGLPAGEGSWLLTLGIEIDGELVDLVPLLAHLLQR 239 Query: 221 DARWTDVKTIAAIDDISLISLRAPGGKRVDALAAPLKVIVSAMLDLLTDVRRKDGALRIS 280 D RW D + IA IDD +LI LRAPGGKR++ALAAPLK IV +ML+LLTD RK+G L +S Sbjct: 240 DGRWLDARQIALIDDHALIMLRAPGGKRIEALAAPLKAIVGSMLELLTDPLRKEGPLLLS 299 Query: 281 AWDAGRLDDMCRRL---GEDGATYGNGFHLQSDAGLRELALR------------------ 319 +WDA RL+ M L + A + LQ DAGLR LA R Sbjct: 300 SWDAYRLETMRLSLLDTQRERAGAHGAWQLQGDAGLRALAQRLQGAGAPQAVSAPADLGV 359 Query: 320 -------------XYSRAHHLAGILADDMGLGKTAQMLAHILIEKQSGRLDCPALVVLPT 366 Y R H LAGILADDMGLGKTAQ LAH+LIEKQ+GRLD PALVVLPT Sbjct: 360 TLRPYQLHGVAWLQYLREHRLAGILADDMGLGKTAQALAHLLIEKQAGRLDLPALVVLPT 419 Query: 367 SLVFNWQAEARRMTPDLRVLALQGPQREDDFARMAGFDIVLTTYPLVWRDLDAL 420 SL+FNWQAEARRM P LRVLALQGP+R DF MA +D++LTTYPL+WRD AL Sbjct: 420 SLIFNWQAEARRMAPGLRVLALQGPERHRDFPHMAEYDLLLTTYPLLWRDRAAL 473 >ref|ZP_08273604.1| DNA helicase, SNF2/RAD54 family [Oxalobacteraceae bacterium IMCC9480] gb|EGF32923.1| DNA helicase, SNF2/RAD54 family [Oxalobacteraceae bacterium IMCC9480] Length = 824 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 255/471 (54%), Positives = 306/471 (64%), Gaps = 63/471 (13%) Query: 12 MPDESEVLGRFRPRLTLQTFTRGDGVLGLRPGGLFGPRGGNVTVAQVDWTYQAXTS-RWR 70 M + + V G FRPRLTLQT TRGDG+LG+RP GLFGPRGG+VTVA++DWTY + RW+ Sbjct: 1 MTEPAAVAGIFRPRLTLQTLTRGDGLLGMRPSGLFGPRGGSVTVARIDWTYATASGLRWQ 60 Query: 71 RSI---------------------------NLHAEADALEAIQAAGLLPLPADALQWRAD 103 + +L AEA+AL+ I G PLPA ALQWR+D Sbjct: 61 IAAPTALLNRRPAGMPPVFDETGQHVALLRDLDAEANALDRILELGFHPLPARALQWRSD 120 Query: 104 DMATIDGQLWSLLLENNFGDFWADRVPELQQQGWSIVVRPGFAHESVPVESWRVIVSPES 163 LWSLL E+ FGDFWA+++P LQ+ GW +VV PGFAHESVPVE+W ++V+P + Sbjct: 121 STLPASEPLWSLLQESFFGDFWAEQLPGLQELGWRVVVMPGFAHESVPVEAWHLVVNPAN 180 Query: 164 GAVLGKEVASALQQGRTKIIGDFSEPGRAAWWLLTMGVEIEGQFFDLTPMLADLLRRDAR 223 G VLGKEVA+ L++ ++ + P A WLL +GVEI G+ DL PMLA LL++D R Sbjct: 181 GDVLGKEVAAPLRRRANGVVA-LAGPANAGSWLLLLGVEINGELLDLVPMLALLLKQDRR 239 Query: 224 WTDVKTIAAIDDISLISLRAPGGKRVDALAAPLKVIVSAMLDLLTDVRRKDGALRISAWD 283 W + IA IDD +LI LRAPGGKR+DALAAPLK IVS+MLDLLTD RRK+G L +S+WD Sbjct: 240 WLNAGLIAQIDDAALIRLRAPGGKRIDALAAPLKAIVSSMLDLLTDPRRKEGPLPLSSWD 299 Query: 284 AGRL--------DDMCRRLGEDG-----------------ATYGNGFHLQSDAGL----- 313 A RL D R G G + G + + AGL Sbjct: 300 AERLEQLRTSLLDSQADRAGPHGGWQLQGQDGLQQLVQRLSAVGGIAPVTAPAGLGVTLR 359 Query: 314 ----RELALRXYSRAHHLAGILADDMGLGKTAQMLAHILIEKQSGRLDCPALVVLPTSLV 369 +A Y RAH LAGILADDMGLGKTAQ LAH+LIEKQ+GRL PALVVLPTSL+ Sbjct: 360 PYQLHGVAWLQYLRAHDLAGILADDMGLGKTAQALAHLLIEKQAGRLVNPALVVLPTSLL 419 Query: 370 FNWQAEARRMTPDLRVLALQGPQREDDFARMAGFDIVLTTYPLVWRDLDAL 420 FNWQAEA RM PDL VL LQG QR+DDF RMA +DIVLTTYPLVWRDLD L Sbjct: 420 FNWQAEAARMAPDLSVLTLQGSQRDDDFGRMAEYDIVLTTYPLVWRDLDRL 470 >ref|YP_003777961.1| superfamily II helicase [Herbaspirillum seropedicae SmR1] gb|ADJ66053.1| superfamily II helicase protein [Herbaspirillum seropedicae SmR1] Length = 829 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 232/457 (50%), Positives = 287/457 (62%), Gaps = 56/457 (12%) Query: 16 SEVLGRFRPRLTLQTFTRGDGVLGLRPGGLFGPRGGNVTVAQVDWTYQAXTSRWRRSI-- 73 S + F PRLTLQT TRGDG+LG+R GLFGPRGG VTVAQ+DW Y W Sbjct: 14 SPTVSAFHPRLTLQTLTRGDGLLGMRAHGLFGPRGGMVTVAQIDWVYGQGAQGWSTPAPT 73 Query: 74 ----------------NLHAEADALEAIQAAGLLPLPADALQWRADDMATIDGQLWSLLL 117 + AEA ALE I+ GLLPL DALQWRA + G LW+L+ Sbjct: 74 SPNGDQPDYTPAHIQRDHQAEAAALEDIRELGLLPLREDALQWRAHNPLHDAGPLWTLVQ 133 Query: 118 ENNFGDFWADRVPELQQQGWSIVVRPGFAHESVPVESWRVIVSPESGAVLGKEVASAL-- 175 E FGDFWAD+ P LQ QGW + RPGFAHESVPV +WR IVS ++G V+ +EVA+ L Sbjct: 134 EEFFGDFWADQAPRLQAQGWILRARPGFAHESVPVTAWRFIVSSQTGEVINREVAAPLTP 193 Query: 176 QQGRTKIIGDFSEPGRAAWWLLTMGVEIEGQFFDLTPMLADLLRRDARWTDVKTIAAIDD 235 + +++ GR WLL +G+E+EGQ D+ PM+ADLLRRD RW D + + +D Sbjct: 194 RAFSSEVFDGLDPSGR---WLLAIGIEVEGQSMDVAPMVADLLRRDPRWGDAQQVERMDP 250 Query: 236 ISLISLRAPGGKRVDALAAPLKVIVSAMLDLLTDVRRKDGALRISAWDAGRLDDMCRRL- 294 ++ISLRAPGG+R+DA+A PLK +V A+LDLL D+ RKDG LR++ WDA R+D + L Sbjct: 251 HAVISLRAPGGRRIDAMAGPLKAVVLALLDLLVDLGRKDGPLRLTPWDAHRIDGLQAALQ 310 Query: 295 GEDGATY-----------------------------GNGFHLQSDAGLRELALRXYSRAH 325 G +GAT G G L+ D +A Y R H Sbjct: 311 GLEGATPWHISGADGLLALARRLRAAGSVAPVPQPDGLGLTLR-DYQRYGVAWMQYLRTH 369 Query: 326 HLAGILADDMGLGKTAQMLAHILIEKQSGRLDCPALVVLPTSLVFNWQAEARRMTPDLRV 385 LAGILADDMGLGKTAQ+LAH+LIEKQ+GRLD P LVV PTSL+FNWQ EARR+TPDLRV Sbjct: 370 GLAGILADDMGLGKTAQVLAHVLIEKQAGRLDLPVLVVAPTSLLFNWQQEARRITPDLRV 429 Query: 386 LALQGPQREDDFARMAG--FDIVLTTYPLVWRDLDAL 420 L L G +R F+ +A D+VLT+YPL+WRDLD L Sbjct: 430 LLLHGQERAQHFSALASGQVDLVLTSYPLLWRDLDQL 466 >ref|YP_004234887.1| SNF2-like protein [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX46320.1| SNF2-related protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 947 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 235/491 (47%), Positives = 290/491 (59%), Gaps = 93/491 (18%) Query: 22 FRPRLTLQTFTRGDGVLGLRPGGLFGPRGGNVTVAQVDWTYQAXT-SRW----------- 69 F+PRLTL+T RGDG+LG+R G GPRGG VT+A VDWTY+ + W Sbjct: 74 FQPRLTLRTLGRGDGLLGMRAHGGMGPRGGQVTLAWVDWTYRLQDGTLWTVPAPASILNT 133 Query: 70 ----RRSI----------NLHAEADALEAIQAAGLLPLPADALQWR-------------- 101 R ++ ++HAEADA++A++ GL+P+PAD LQWR Sbjct: 134 RPPARMAVPGAAGGWLHRDVHAEADAMDALRDTGLVPVPADRLQWRGPGDALGLVGSALP 193 Query: 102 --------ADDMATIDGQLWSLLLENNFGDFWADRVPELQQQGWSIVVRPGFAHESVPVE 153 A A G W+L E FGDFWAD VP L+ GWS+V+ PGFAHES PV Sbjct: 194 EQAPVQDGAAVAAIPPGPAWTLPQEAAFGDFWADAVPRLRATGWSVVLAPGFAHESTPVS 253 Query: 154 SWRVIVSPESGAVLGKEVASALQQGRTKIIGDFSEPGRAAWWLLTMGVEIEGQFFDLTPM 213 WR+I+ +G VLG+EV +A + RT+ + P R WLL++GV+I+G+ DL+PM Sbjct: 254 RWRLILDHATGEVLGREVDTA--EPRTRPVQKLRLPEREGAWLLSLGVDIDGETLDLSPM 311 Query: 214 LADLLRRDARWTDVKTIAAIDDISLISLRAPGGKRVDALAAPLKVIVSAMLDLLTDV--- 270 +ADLLRRD RW D + +AAIDD S + LRAPGG+R+DA AAPLK IV AM+DLLTD Sbjct: 312 VADLLRRDPRWLDARALAAIDDHSTVQLRAPGGRRIDAPAAPLKAIVGAMVDLLTDPALH 371 Query: 271 -RRKDGALRISAWDAGR-------LDDMCRRLGEDGAT-YGNGFHLQSDAGLRELALR-- 319 RR R+ AW+A R LD R G T + G+ L DAGL +LA R Sbjct: 372 QRRPGDPFRLGAWEARRIEALRAALDQSVRVAGRQAHTGHDLGWQLLGDAGLAQLAQRLR 431 Query: 320 -----------------------------XYSRAHHLAGILADDMGLGKTAQMLAHILIE 350 Y RAH L GILADDMGLGKTAQ LAH++ E Sbjct: 432 DEGTPQPVPVPNGLAITLRPYQREGLDWLQYLRAHGLGGILADDMGLGKTAQALAHVVAE 491 Query: 351 KQSGRLDCPALVVLPTSLVFNWQAEARRMTPDLRVLALQGPQREDDFARMAGFDIVLTTY 410 K++GRL PALVV+PTSL+FNWQAEA RM P LRVLAL GP R DF R A D+VLTTY Sbjct: 492 KEAGRLQRPALVVVPTSLLFNWQAEAARMAPGLRVLALHGPDRARDFPRAAASDLVLTTY 551 Query: 411 PLVWRDLDALA 421 PL+WRD DALA Sbjct: 552 PLLWRDADALA 562 >ref|YP_971175.1| SNF2-like protein [Acidovorax citrulli AAC00-1] gb|ABM33401.1| SNF2-related protein [Acidovorax citrulli AAC00-1] Length = 991 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 231/491 (47%), Positives = 282/491 (57%), Gaps = 93/491 (18%) Query: 22 FRPRLTLQTFTRGDGVLGLRPGGLFGPRGGNVTVAQVDWTYQAXT-SRWRRSI------- 73 F+PRLTL+T RGDG+LG+R G GPRGG VT+A VDWTY+ S W Sbjct: 118 FQPRLTLRTLGRGDGLLGMRAHGGIGPRGGQVTLAWVDWTYRLEDGSLWTEPAPVSVLNT 177 Query: 74 ------------------NLHAEADALEAIQAAGLLPLPADALQWR-------------- 101 ++ AEADA++A++ GL+P+PAD LQWR Sbjct: 178 RPPARVAVPGAAGAWLHRDVRAEADAVDALRDTGLVPVPADRLQWRGPGDALGLVGSALA 237 Query: 102 --------ADDMATIDGQLWSLLLENNFGDFWADRVPELQQQGWSIVVRPGFAHESVPVE 153 A A G W+L E FGDFWAD VP L+ GWS+VV PGFAHES PV Sbjct: 238 EQAPGPDGAAVAAVPPGPAWTLPQEAAFGDFWADAVPRLRATGWSVVVAPGFAHESTPVL 297 Query: 154 SWRVIVSPESGAVLGKEVASALQQGRTKIIGDFSEPGRAAWWLLTMGVEIEGQFFDLTPM 213 WR+I+ P +G VLGKE + R + + P R WLL++GV+I+G+ DL PM Sbjct: 298 RWRLILDPATGEVLGKEADTVAP--RARPVQKLRLPEREGAWLLSLGVDIDGETLDLAPM 355 Query: 214 LADLLRRDARWTDVKTIAAIDDISLISLRAPGGKRVDALAAPLKVIVSAMLDLLTDV--- 270 +ADLLRRD RW D + +AAIDD S + LRAPGG+R+DA AAPLK IV AM+DLLTD Sbjct: 356 VADLLRRDHRWLDARALAAIDDHSTVRLRAPGGRRIDAPAAPLKAIVGAMVDLLTDPALH 415 Query: 271 -RRKDGALRISAWDAGRLD------DMCRRLGEDGATYGN--GFHLQSDAGLRELALR-- 319 RR R+ AW+A R++ D R+ A G+ G+ L DAGL +LA R Sbjct: 416 QRRPGDPFRLGAWEARRIEALRAALDQSGRVARRQAHTGHDLGWQLLGDAGLAQLAQRLR 475 Query: 320 -----------------------------XYSRAHHLAGILADDMGLGKTAQMLAHILIE 350 Y RA L GILADDMGLGKTAQ LAH++ E Sbjct: 476 DEGTPQPVPVPIGLAITLRPYQREGLAWLQYLRAQGLGGILADDMGLGKTAQALAHVMAE 535 Query: 351 KQSGRLDCPALVVLPTSLVFNWQAEARRMTPDLRVLALQGPQREDDFARMAGFDIVLTTY 410 K++GRL PALVV+PTSL+FNWQAEA RM P LRVLAL GP R DF R D+VLTTY Sbjct: 536 KEAGRLQRPALVVVPTSLLFNWQAEAARMVPGLRVLALHGPDRARDFPRAPASDLVLTTY 595 Query: 411 PLVWRDLDALA 421 PL+WRD DALA Sbjct: 596 PLLWRDADALA 606