BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0326.p         (140 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774015.1| membrane protein [Herbaspirillum seropedicae...   172   2e-41
ref|YP_002823848.1| hypothetical protein NGR_b16440 [Sinorhizobi...   140   8e-32
ref|YP_003732149.1| DoxX family protein [Acinetobacter sp. DR1] ...   140   9e-32
ref|YP_002892839.1| DoxX family protein [Tolumonas auensis DSM 9...   139   2e-31
ref|YP_002823671.1| hypothetical protein NGR_b14670 [Sinorhizobi...   137   4e-31

>ref|YP_003774015.1| membrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62107.1| membrane protein [Herbaspirillum seropedicae SmR1]
          Length = 138

 Score =  172 bits (435), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/138 (68%), Positives = 113/138 (81%)

Query: 1   MTTTILNTKADYAAFLLRVTSGLFFLAHAAMKIFVFTLPGTAAFFESLGLPGFLAYLIIL 60
           M+T  +NT+ADYAAFLLRVT G+FFL HA +KIFVFT  GT  FF SLG+PG+ AY +I 
Sbjct: 1   MSTVTVNTRADYAAFLLRVTMGVFFLVHAGLKIFVFTPAGTVGFFASLGVPGWFAYPVIA 60

Query: 61  LEVIGGIALVIGFYGDLLAIPLAIDLAGAIFTVHGKNGFFFSNPKGGWEYLAMWIVALIA 120
           LEV+GGIALV+G+YG  LA+PLA DL GAI  VHGK GFFF+NPKGGWEYLA+WIV LIA
Sbjct: 61  LEVVGGIALVLGYYGRWLALPLAADLLGAIVLVHGKAGFFFTNPKGGWEYLALWIVGLIA 120

Query: 121 VYLLGNGAFAVKRKSLNN 138
           V+LLG+GAFA+KR+    
Sbjct: 121 VFLLGDGAFALKREEPRR 138


>ref|YP_002823848.1| hypothetical protein NGR_b16440 [Sinorhizobium fredii NGR234]
 gb|AAQ87226.1| Hypothetical protein RNGR00204 [Sinorhizobium fredii NGR234]
 gb|ACP23095.1| hypothetical protein NGR_b16440 [Sinorhizobium fredii NGR234]
          Length = 138

 Score =  140 bits (352), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 94/136 (69%), Gaps = 1/136 (0%)

Query: 5   ILNTKADYAAFLLRVTSGLFFLAHAAMKIFVFTLPGTAAFFESLGLPGFLAYLIILLEVI 64
           I +  A YA  +LRVT GL FLAHA +K+FVFT  GTA FF SLGLP  LAYL I LE +
Sbjct: 2   IDSRTAPYAILMLRVTLGLLFLAHAGLKVFVFTPAGTAQFFASLGLPAALAYLTIALETL 61

Query: 65  GGIALVIGFYGDLLAIPLAIDLAGAIFTVHGKNGFFFSNPKGGWEYLAMWIVALIAVYLL 124
           GG+AL+ GF+  + A+ L   L GAI  VH   GFFF+NP GGWE+LA+WIV L AV L 
Sbjct: 62  GGLALIAGFFARVAALVLIPVLLGAIIMVHAAAGFFFTNPNGGWEFLALWIVGLAAVVLA 121

Query: 125 GNGAFAVKRKSLNNAA 140
           G+GA AV R + N+ A
Sbjct: 122 GDGALAV-RPTFNSKA 136


>ref|YP_003732149.1| DoxX family protein [Acinetobacter sp. DR1]
 gb|ADI90776.1| DoxX family protein [Acinetobacter sp. DR1]
          Length = 134

 Score =  140 bits (352), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 69/131 (52%), Positives = 96/131 (73%)

Query: 7   NTKADYAAFLLRVTSGLFFLAHAAMKIFVFTLPGTAAFFESLGLPGFLAYLIILLEVIGG 66
           +  A YAA LLR+T  L+F AHA +K+FVFT  GTA FF+S+G+PG++AY+ IL E++G 
Sbjct: 4   SNTAPYAALLLRITLALYFFAHAGLKLFVFTPAGTAQFFQSVGVPGWMAYVTILWEILGA 63

Query: 67  IALVIGFYGDLLAIPLAIDLAGAIFTVHGKNGFFFSNPKGGWEYLAMWIVALIAVYLLGN 126
           I L +GF   ++AI L   L GAIFTVHG  GFFF+NP GGWE+  MWI++L+A+ L+G+
Sbjct: 64  ILLFVGFKPRIVAIALIPVLLGAIFTVHGAAGFFFTNPNGGWEFPFMWIISLVALALIGD 123

Query: 127 GAFAVKRKSLN 137
           G F++ +   N
Sbjct: 124 GPFSLSKSFKN 134


>ref|YP_002892839.1| DoxX family protein [Tolumonas auensis DSM 9187]
 gb|ACQ93253.1| DoxX family protein [Tolumonas auensis DSM 9187]
          Length = 135

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 91/132 (68%)

Query: 7   NTKADYAAFLLRVTSGLFFLAHAAMKIFVFTLPGTAAFFESLGLPGFLAYLIILLEVIGG 66
           N  A YAA ++R+  G  FLAH  +K FVFT  GTA FF SLGLPG LAYL + +E+IGG
Sbjct: 4   NHTAPYAALIMRLALGTLFLAHFGLKYFVFTPAGTAQFFTSLGLPGGLAYLTMGVELIGG 63

Query: 67  IALVIGFYGDLLAIPLAIDLAGAIFTVHGKNGFFFSNPKGGWEYLAMWIVALIAVYLLGN 126
           IAL++G Y  ++A+ L   L GAI TVHG  GFFFSNP GGWE+LA WIV LI + L G+
Sbjct: 64  IALILGIYARIVAVALIPILLGAIVTVHGSAGFFFSNPNGGWEFLAFWIVGLIVLALTGD 123

Query: 127 GAFAVKRKSLNN 138
           G FA+K   +  
Sbjct: 124 GKFALKPTMMKK 135


>ref|YP_002823671.1| hypothetical protein NGR_b14670 [Sinorhizobium fredii NGR234]
 gb|ACP22918.1| hypothetical protein NGR_b14670 [Sinorhizobium fredii NGR234]
          Length = 138

 Score =  137 bits (346), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/131 (58%), Positives = 89/131 (67%)

Query: 9   KADYAAFLLRVTSGLFFLAHAAMKIFVFTLPGTAAFFESLGLPGFLAYLIILLEVIGGIA 68
            A YA  +LRV  GL FLAHA +K FVFT  GTA FF SLGLP  LAYL I LE +GG+A
Sbjct: 6   TAPYAILILRVALGLLFLAHAGLKAFVFTPAGTAQFFASLGLPPALAYLTIALETVGGLA 65

Query: 69  LVIGFYGDLLAIPLAIDLAGAIFTVHGKNGFFFSNPKGGWEYLAMWIVALIAVYLLGNGA 128
           LV GF+  L A+ L   L GAI TVH   GFFF+NP GGWE+ A+WIV L AV L G+GA
Sbjct: 66  LVAGFFARLAALALIPVLLGAIMTVHAAAGFFFTNPNGGWEFPALWIVGLAAVVLAGDGA 125

Query: 129 FAVKRKSLNNA 139
            A++    +NA
Sbjct: 126 LAIRPTFSSNA 136