BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0320.p (466 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003278635.1| GntR family transcriptional regulator [Comam... 788 0.0 ref|ZP_07043186.1| transcriptional regulator, GntR family protei... 786 0.0 ref|YP_001565516.1| transcriptional regulator [Delftia acidovora... 771 0.0 ref|YP_004487679.1| GntR family transcriptional regulator with a... 751 0.0 ref|ZP_03543042.1| transcriptional regulator, GntR family with a... 728 0.0 >ref|YP_003278635.1| GntR family transcriptional regulator [Comamonas testosteroni CNB-2] gb|ACY33339.1| transcriptional regulator, GntR family [Comamonas testosteroni CNB-2] Length = 466 Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/465 (85%), Positives = 427/465 (91%), Gaps = 3/465 (0%) Query: 5 KNIQDENLPIWLPRLSVHGGPRFLQIADALQAAVADGSLKPGDRLLPQRQLAAQLDVDLT 64 K IQD++LP+WLPRL+VHGGPRFLQIADALQAA+ADGSLKPGDRL PQRQLAAQL++DLT Sbjct: 2 KTIQDDSLPVWLPRLAVHGGPRFLQIADALQAAMADGSLKPGDRLPPQRQLAAQLNLDLT 61 Query: 65 TITRAYDEARRRNLLEGRGARGTYVAAPKVELISILDLSMNTPPPPEGVDFDDMLKQGLS 124 T+TRAYDEARRR+LLEGRGARGTYVAAP++EL S+LDLSMNTPPPP GVDFDD+LKQGLS Sbjct: 62 TVTRAYDEARRRHLLEGRGARGTYVAAPRIELTSVLDLSMNTPPPPAGVDFDDLLKQGLS 121 Query: 125 QVLMRADSELLMTYHLTGGSDSNRKAGAKWLAPMFGHLDSGQVVVCPGAQAAIAALILAL 184 QV+M AD+ LLMTYHL GGSDS+RKAGA+WL PMFG LDS QVVVCPGAQAAIAALILAL Sbjct: 122 QVMMGADTALLMTYHLGGGSDSDRKAGARWLEPMFGALDSAQVVVCPGAQAAIAALILAL 181 Query: 185 TEPGDVILAEPMSYPGLRAAATQLGRHVIAVEADEHGMVPERFEEACRQHKPGLVYLNPT 244 T+PGDVIL EP SYPGLR AATQ GR ++AVEAD+HGMVPE E+AC QH+PGL+YLNPT Sbjct: 182 TKPGDVILTEPASYPGLRTAATQFGRRIVAVEADQHGMVPEMLEQACHQHQPGLLYLNPT 241 Query: 245 LQNPTAVTMPERRRKEFASIAKRCNVRIVEDDPYWLLADGPPPPIARFAPEQVYYISTLS 304 LQNPTA+T+PERRRKE A+IAKRCNVRIVEDDPYWLLAD PPPPIA FAPEQV YISTLS Sbjct: 242 LQNPTAITIPERRRKELANIAKRCNVRIVEDDPYWLLADAPPPPIATFAPEQVSYISTLS 301 Query: 305 KCLTPGLRIAFVLIRDPHERERFLAALRSFALMVAPLTAALATQWILDGSADGLMEGVRN 364 KCLTPGLR+AFVLIRDPHERERFL ALRSFALMVAPLTAALATQWILDGSA LMEGVR Sbjct: 302 KCLTPGLRVAFVLIRDPHERERFLVALRSFALMVAPLTAALATQWILDGSAAALMEGVRK 361 Query: 365 EARLRHRMARDILAGRYSGAGDGLHVWLELPAYWNSSQLAHAADSEGIAVTPAEAFAT-- 422 EARLRH MARDILAGRYSG GDGLHVWLELP YWNSSQLA AAD+EGIAVTPAEAFAT Sbjct: 362 EARLRHWMARDILAGRYSGTGDGLHVWLELPGYWNSSQLARAADNEGIAVTPAEAFATSA 421 Query: 423 -GNGSVNAIRISLGSIKDRGRLLAGLQRLSHLLARRPESFSAAGV 466 +GSVNAIRISLGSIKDRGRL GLQ+LSHLLARRPE FSAA V Sbjct: 422 ASSGSVNAIRISLGSIKDRGRLQTGLQKLSHLLARRPEPFSAAVV 466 >ref|ZP_07043186.1| transcriptional regulator, GntR family protein [Comamonas testosteroni S44] gb|EFI63191.1| transcriptional regulator, GntR family protein [Comamonas testosteroni S44] Length = 466 Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/465 (85%), Positives = 427/465 (91%), Gaps = 3/465 (0%) Query: 5 KNIQDENLPIWLPRLSVHGGPRFLQIADALQAAVADGSLKPGDRLLPQRQLAAQLDVDLT 64 K IQD++LP+WLPRL++HGGPRFLQIADALQAA+ADGSLKPGDRL PQRQLAAQL++DLT Sbjct: 2 KTIQDDSLPVWLPRLAMHGGPRFLQIADALQAAMADGSLKPGDRLPPQRQLAAQLNLDLT 61 Query: 65 TITRAYDEARRRNLLEGRGARGTYVAAPKVELISILDLSMNTPPPPEGVDFDDMLKQGLS 124 T+TRAYDEARRR+LLEGRGARGTYVAAP++EL S+LDLSMNTPPPP GVDFDD+LKQGLS Sbjct: 62 TVTRAYDEARRRHLLEGRGARGTYVAAPRIELTSVLDLSMNTPPPPAGVDFDDLLKQGLS 121 Query: 125 QVLMRADSELLMTYHLTGGSDSNRKAGAKWLAPMFGHLDSGQVVVCPGAQAAIAALILAL 184 QV+M AD+ LLMTYHL GGSDS+RKAGA+WL PMFG LDS QVVVCPGAQAAIAALILAL Sbjct: 122 QVMMGADTALLMTYHLGGGSDSDRKAGARWLEPMFGALDSAQVVVCPGAQAAIAALILAL 181 Query: 185 TEPGDVILAEPMSYPGLRAAATQLGRHVIAVEADEHGMVPERFEEACRQHKPGLVYLNPT 244 T+PGDVIL EP SYPGLR AATQ GR ++AVEAD+HGMVPE E+AC QH+PGL+YLNPT Sbjct: 182 TKPGDVILTEPASYPGLRTAATQFGRRIVAVEADQHGMVPEMLEQACHQHQPGLLYLNPT 241 Query: 245 LQNPTAVTMPERRRKEFASIAKRCNVRIVEDDPYWLLADGPPPPIARFAPEQVYYISTLS 304 LQNPTA+T+PERRRKE A+IAKRCNVRIVEDDPYWLLAD PPPPIA FA EQV YISTLS Sbjct: 242 LQNPTAITIPERRRKELANIAKRCNVRIVEDDPYWLLADAPPPPIATFAQEQVSYISTLS 301 Query: 305 KCLTPGLRIAFVLIRDPHERERFLAALRSFALMVAPLTAALATQWILDGSADGLMEGVRN 364 KCLTPGLR+AFVLIRDPHERERFL ALRSFALMVAPLTAALATQWILDGSA LMEGVR Sbjct: 302 KCLTPGLRVAFVLIRDPHERERFLVALRSFALMVAPLTAALATQWILDGSAAALMEGVRK 361 Query: 365 EARLRHRMARDILAGRYSGAGDGLHVWLELPAYWNSSQLAHAADSEGIAVTPAEAF---A 421 EARLRH MARDILAGRYSG GDGLHVWLELP YWNSSQLA AAD+EGIAVTPAEAF A Sbjct: 362 EARLRHWMARDILAGRYSGTGDGLHVWLELPGYWNSSQLARAADNEGIAVTPAEAFATSA 421 Query: 422 TGNGSVNAIRISLGSIKDRGRLLAGLQRLSHLLARRPESFSAAGV 466 TG+GSVNAIRISLGSIKDRGRL GLQRLSHLLARRPE FSAA V Sbjct: 422 TGSGSVNAIRISLGSIKDRGRLQTGLQRLSHLLARRPEPFSAAVV 466 >ref|YP_001565516.1| transcriptional regulator [Delftia acidovorans SPH-1] gb|ABX37131.1| transcriptional regulator, GntR family with aminotransferase domain [Delftia acidovorans SPH-1] Length = 460 Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/460 (84%), Positives = 422/460 (91%) Query: 7 IQDENLPIWLPRLSVHGGPRFLQIADALQAAVADGSLKPGDRLLPQRQLAAQLDVDLTTI 66 +QDE LP+WLP+L+V GGPRFLQIADALQAAVADGSLKPGDRL PQR+LAAQLDVDLTT+ Sbjct: 1 MQDEPLPLWLPQLAVQGGPRFLQIADALQAAVADGSLKPGDRLPPQRRLAAQLDVDLTTV 60 Query: 67 TRAYDEARRRNLLEGRGARGTYVAAPKVELISILDLSMNTPPPPEGVDFDDMLKQGLSQV 126 TRAYDEARRR LLEGRGARGTYVAAPKVEL ++LDLSMNTPPPP GVD DDMLKQGL+QV Sbjct: 61 TRAYDEARRRQLLEGRGARGTYVAAPKVELNAVLDLSMNTPPPPAGVDLDDMLKQGLAQV 120 Query: 127 LMRADSELLMTYHLTGGSDSNRKAGAKWLAPMFGHLDSGQVVVCPGAQAAIAALILALTE 186 LM AD++LLMTYHL GGSDS+RKAGA+WL PMFG +D+ Q+VVCPGAQAAIAAL+LALTE Sbjct: 121 LMGADAQLLMTYHLGGGSDSDRKAGARWLQPMFGDVDARQLVVCPGAQAAIAALVLALTE 180 Query: 187 PGDVILAEPMSYPGLRAAATQLGRHVIAVEADEHGMVPERFEEACRQHKPGLVYLNPTLQ 246 PGDVIL EP SYPGLRAAA Q GR +IAV+AD G++PER E+ACRQH+PGLVYLNPTLQ Sbjct: 181 PGDVILTEPTSYPGLRAAAAQFGRRIIAVQADSQGIMPERLEQACRQHRPGLVYLNPTLQ 240 Query: 247 NPTAVTMPERRRKEFASIAKRCNVRIVEDDPYWLLADGPPPPIARFAPEQVYYISTLSKC 306 NPTA+T+ E RR+E ASIAKRC+VRIVEDDPYWLLAD PPPPIARFAPEQVYYISTLSKC Sbjct: 241 NPTAITLAEDRRQEIASIAKRCHVRIVEDDPYWLLADAPPPPIARFAPEQVYYISTLSKC 300 Query: 307 LTPGLRIAFVLIRDPHERERFLAALRSFALMVAPLTAALATQWILDGSADGLMEGVRNEA 366 LTPGLR+AFVL+ DPHER+RFL ALRSFALM PLTAALATQWILDGSA LMEGVR EA Sbjct: 301 LTPGLRVAFVLLPDPHERQRFLVALRSFALMATPLTAALATQWILDGSAGKLMEGVRKEA 360 Query: 367 RLRHRMARDILAGRYSGAGDGLHVWLELPAYWNSSQLAHAADSEGIAVTPAEAFATGNGS 426 RLRHRMARD+LAGRYSGAGDGLHVWLELP+YW+ SQLA AADSEGIAVTPA+AFATG S Sbjct: 361 RLRHRMARDVLAGRYSGAGDGLHVWLELPSYWSPSQLARAADSEGIAVTPAQAFATGGES 420 Query: 427 VNAIRISLGSIKDRGRLLAGLQRLSHLLARRPESFSAAGV 466 VNAIRISLGSIKDRGRL AGLQRLSHLLAR PESFSAA V Sbjct: 421 VNAIRISLGSIKDRGRLQAGLQRLSHLLARLPESFSAAVV 460 >ref|YP_004487679.1| GntR family transcriptional regulator with aminotransferase domain [Delftia sp. Cs1-4] gb|AEF89324.1| transcriptional regulator, GntR family with aminotransferase domain [Delftia sp. Cs1-4] Length = 460 Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/460 (84%), Positives = 422/460 (91%) Query: 7 IQDENLPIWLPRLSVHGGPRFLQIADALQAAVADGSLKPGDRLLPQRQLAAQLDVDLTTI 66 +QDE LP+WLP+L+V GGPRFLQIADALQAA+ADGSLKPGDRL PQR+LAAQLDVDLTT+ Sbjct: 1 MQDEPLPLWLPQLAVQGGPRFLQIADALQAALADGSLKPGDRLPPQRRLAAQLDVDLTTV 60 Query: 67 TRAYDEARRRNLLEGRGARGTYVAAPKVELISILDLSMNTPPPPEGVDFDDMLKQGLSQV 126 TRAYDEARRR LLEGRGARGTYVAAPKVEL ++LDLSMNTPPPP GVD DDMLKQGLSQV Sbjct: 61 TRAYDEARRRQLLEGRGARGTYVAAPKVELNAVLDLSMNTPPPPAGVDLDDMLKQGLSQV 120 Query: 127 LMRADSELLMTYHLTGGSDSNRKAGAKWLAPMFGHLDSGQVVVCPGAQAAIAALILALTE 186 LM AD++LLMTYHL GGSDS+RKAGA+WL PMFG +D+ Q+VVCPGAQAAIAAL+LALTE Sbjct: 121 LMGADAQLLMTYHLGGGSDSDRKAGARWLQPMFGDVDARQLVVCPGAQAAIAALVLALTE 180 Query: 187 PGDVILAEPMSYPGLRAAATQLGRHVIAVEADEHGMVPERFEEACRQHKPGLVYLNPTLQ 246 PGDVIL EP SYPGLRAAA Q GR +IAV+AD G++PER E+ACRQH+PGLVYLNPTLQ Sbjct: 181 PGDVILTEPTSYPGLRAAAAQFGRRIIAVQADSQGIMPERLEQACRQHRPGLVYLNPTLQ 240 Query: 247 NPTAVTMPERRRKEFASIAKRCNVRIVEDDPYWLLADGPPPPIARFAPEQVYYISTLSKC 306 NPTA+T+ E RR+E ASIAKRC+VRIVEDDPYWLLAD PPPPIARFAPEQVYYISTLSKC Sbjct: 241 NPTAITLAEDRRQEIASIAKRCHVRIVEDDPYWLLADAPPPPIARFAPEQVYYISTLSKC 300 Query: 307 LTPGLRIAFVLIRDPHERERFLAALRSFALMVAPLTAALATQWILDGSADGLMEGVRNEA 366 LTPGLR+AFVL+ DPHER+RFL ALRSFALM PLTAALATQWILDGSA LMEGVR EA Sbjct: 301 LTPGLRVAFVLLPDPHERQRFLVALRSFALMATPLTAALATQWILDGSAGKLMEGVRKEA 360 Query: 367 RLRHRMARDILAGRYSGAGDGLHVWLELPAYWNSSQLAHAADSEGIAVTPAEAFATGNGS 426 RLRHRMARD+LAGRYSGAGDGLHVWLELP+YW+ SQLA AADSEGIAVTPA+AFATG S Sbjct: 361 RLRHRMARDVLAGRYSGAGDGLHVWLELPSYWSPSQLARAADSEGIAVTPAQAFATGGES 420 Query: 427 VNAIRISLGSIKDRGRLLAGLQRLSHLLARRPESFSAAGV 466 VNAIRISLGSIKDRGRL AGLQRLSHLLAR PESFSAA V Sbjct: 421 VNAIRISLGSIKDRGRLQAGLQRLSHLLARLPESFSAAVV 460 >ref|ZP_03543042.1| transcriptional regulator, GntR family with aminotransferase domain [Comamonas testosteroni KF-1] gb|EED67328.1| transcriptional regulator, GntR family with aminotransferase domain [Comamonas testosteroni KF-1] Length = 465 Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/462 (82%), Positives = 411/462 (88%) Query: 5 KNIQDENLPIWLPRLSVHGGPRFLQIADALQAAVADGSLKPGDRLLPQRQLAAQLDVDLT 64 K IQD+ L WLPRLS HGGPRFLQIADALQAA+ADGSL PGDRL PQRQLAAQL +DLT Sbjct: 4 KAIQDDRLRAWLPRLSAHGGPRFLQIADALQAAMADGSLSPGDRLPPQRQLAAQLGIDLT 63 Query: 65 TITRAYDEARRRNLLEGRGARGTYVAAPKVELISILDLSMNTPPPPEGVDFDDMLKQGLS 124 T+TRAYDEARRR+LLEGRGARGTYVAAPKVEL ++LDL MNTPPPP+GVDF+DMLKQGLS Sbjct: 64 TVTRAYDEARRRHLLEGRGARGTYVAAPKVELTTVLDLGMNTPPPPDGVDFEDMLKQGLS 123 Query: 125 QVLMRADSELLMTYHLTGGSDSNRKAGAKWLAPMFGHLDSGQVVVCPGAQAAIAALILAL 184 QVLMRAD+ LLMTYHL GGSDS+RKAGA+WL PM G D QVVVCPGAQAAIAALILA Sbjct: 124 QVLMRADANLLMTYHLGGGSDSDRKAGARWLEPMLGQRDPEQVVVCPGAQAAIAALILAQ 183 Query: 185 TEPGDVILAEPMSYPGLRAAATQLGRHVIAVEADEHGMVPERFEEACRQHKPGLVYLNPT 244 T+PGDVILAEPM+YPGLR A Q R ++AV+AD+HGMVPE E+AC +HKPGL+YLNPT Sbjct: 184 TKPGDVILAEPMAYPGLRTAGAQFDRRIVAVDADQHGMVPEALEQACHKHKPGLIYLNPT 243 Query: 245 LQNPTAVTMPERRRKEFASIAKRCNVRIVEDDPYWLLADGPPPPIARFAPEQVYYISTLS 304 LQNPT++T+PE RR+E ASIAKRCNVRIVEDDPYWLLAD PPPPIA FAPEQV YISTLS Sbjct: 244 LQNPTSITIPEHRRRELASIAKRCNVRIVEDDPYWLLADAPPPPIAFFAPEQVCYISTLS 303 Query: 305 KCLTPGLRIAFVLIRDPHERERFLAALRSFALMVAPLTAALATQWILDGSADGLMEGVRN 364 KCLTPGLR+AFVL+ D HERERFLA LRSFALMVAPLTAALATQWI DGSA LMEGVR Sbjct: 304 KCLTPGLRVAFVLVPDMHERERFLATLRSFALMVAPLTAALATQWIFDGSAAELMEGVRK 363 Query: 365 EARLRHRMARDILAGRYSGAGDGLHVWLELPAYWNSSQLAHAADSEGIAVTPAEAFATGN 424 EARLRH MARDILAGRY G GDGLHVWLELP+YW+SSQLAHAA SEGIAVTPAEAFATGN Sbjct: 364 EARLRHWMARDILAGRYIGVGDGLHVWLELPSYWSSSQLAHAAGSEGIAVTPAEAFATGN 423 Query: 425 GSVNAIRISLGSIKDRGRLLAGLQRLSHLLARRPESFSAAGV 466 SVNAIRISLGSIKDR RL AGL RLSHLLAR+P+S AA V Sbjct: 424 RSVNAIRISLGSIKDRERLQAGLHRLSHLLARQPDSLIAAVV 465