BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0314.p         (155 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_881139.1| hypothetical protein BP2512 [Bordetella pertuss...    74   7e-12
ref|NP_885659.1| hypothetical protein BPP3499 [Bordetella parape...    72   2e-11
ref|YP_002984637.1| MmgE/PrpD family protein [Rhizobium legumino...    67   8e-10
ref|ZP_03502497.1| putative MmgE/PrpD family protein [Rhizobium ...    65   3e-09
ref|YP_771517.1| putative MmgE/PrpD family protein [Rhizobium le...    65   3e-09

>ref|NP_881139.1| hypothetical protein BP2512 [Bordetella pertussis Tohama I]
 emb|CAE42784.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gb|AEE67750.1| hypothetical protein BPTD_2469 [Bordetella pertussis CS]
          Length = 478

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 7/117 (5%)

Query: 8   NLRYRQPESSAQARFSMNYCAALTLVEGVPRMAHFSEEFVARMPVAMRQLLPLVQMHERQ 67
           NLR+ QP  + QARFS+ YCAA  L  G  R+  F+ + VA   +A   ++  V +H  Q
Sbjct: 318 NLRFDQPVGAMQARFSLPYCAARLLHGGSLRLGDFTPQRVADPQLA--GIMARVCLHV-Q 374

Query: 68  ASAQAAALPWGGDCQA----RITFADGRVLEQVSMYPKGCAQNPLSEPEQREKFLDC 120
              Q  A+  G +  A    R+T  DG +LE+V   PKG A NP+++ E+  KF+DC
Sbjct: 375 DVPQGQAISSGTEMTAALRTRVTLCDGTILERVVGAPKGSADNPMTQAERVAKFVDC 431


>ref|NP_885659.1| hypothetical protein BPP3499 [Bordetella parapertussis 12822]
 emb|CAE38783.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 480

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 7/117 (5%)

Query: 8   NLRYRQPESSAQARFSMNYCAALTLVEGVPRMAHFSEEFVARMPVAMRQLLPLVQMHERQ 67
           NLR+ QP  + QARFS+ YCAA  L  G  R+  F+   VA   +A   ++  V +H  Q
Sbjct: 320 NLRFDQPVGAMQARFSLPYCAARLLHGGSLRLGDFTPLRVADPQLA--GIMARVCLHV-Q 376

Query: 68  ASAQAAALPWGGDCQA----RITFADGRVLEQVSMYPKGCAQNPLSEPEQREKFLDC 120
              Q  A+  G +  A    R+T  DG +LE+V   PKG A NP+++ E+  KF+DC
Sbjct: 377 DVPQGQAISSGTEMTAALRTRVTLCDGTILERVVGAPKGSADNPMTQAERVAKFVDC 433


>ref|YP_002984637.1| MmgE/PrpD family protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gb|ACS59675.1| MmgE/PrpD family protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 457

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 8/115 (6%)

Query: 8   NLRYRQPESSAQARFSMNYCAALTLVEGVPRMAHFSEEFVARMPVAMRQLLPLVQMHERQ 67
           NL Y +P    QARFSM YC A   + G   ++ F+ + + R  +  R+ +P V M    
Sbjct: 308 NLAYPEPTDEMQARFSMQYCLATAFLRGSLSLSDFTRQEIGRAEI--REFMPRVDMQSYS 365

Query: 68  ASAQAAA--LPWGGDCQARITFADGRVLEQVSMYPKGCAQNPLSEPEQREKFLDC 120
           A  +     LP        +T  DGR+L +  ++ KG  + P+S  E+  KF+DC
Sbjct: 366 ADEEKGVERLPH----VVTVTMRDGRILNKSRLHAKGSLEAPMSVHEREVKFMDC 416


>ref|ZP_03502497.1| putative MmgE/PrpD family protein [Rhizobium etli Kim 5]
          Length = 463

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 55/115 (47%), Gaps = 8/115 (6%)

Query: 8   NLRYRQPESSAQARFSMNYCAALTLVEGVPRMAHFSEEFVARMPVAMRQLLPLVQMHERQ 67
           NL Y +P    QARFSM YC A   ++G   +  F+   V+R  V  R L   + M    
Sbjct: 308 NLAYAEPADEMQARFSMQYCLATAFLKGSVSLGDFTRSAVSRANV--RMLAKRITMESYS 365

Query: 68  ASAQAAA--LPWGGDCQARITFADGRVLEQVSMYPKGCAQNPLSEPEQREKFLDC 120
           A  +     LP        +  +DG  L +  ++ KG  Q+PLS  E+REKF DC
Sbjct: 366 ADEERGNERLPH----IVTVRLSDGTTLHRQRLHAKGSVQDPLSAQERREKFEDC 416


>ref|YP_771517.1| putative MmgE/PrpD family protein [Rhizobium leguminosarum bv.
           viciae 3841]
 emb|CAK03436.1| putative MmgE/PrpD family protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 457

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 8/115 (6%)

Query: 8   NLRYRQPESSAQARFSMNYCAALTLVEGVPRMAHFSEEFVARMPVAMRQLLPLVQMHERQ 67
           NL Y  P    QARFSM YC A   ++G   ++ F+ + + R  +  R+ +P ++M    
Sbjct: 308 NLAYPAPTDEMQARFSMQYCLATAFLKGSLSLSDFTRQEIGRPEI--REFMPRIEMRSYS 365

Query: 68  ASAQAAA--LPWGGDCQARITFADGRVLEQVSMYPKGCAQNPLSEPEQREKFLDC 120
           A  +     LP        +T  DGR+L +  ++ KG  + P+S  E+  KF+DC
Sbjct: 366 ADEEKGVERLPH----VVTVTMRDGRILNKSRLHAKGSLEAPMSVREREVKFIDC 416