BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0311.p (191 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_299328.1| histidine kinase [Ralstonia eutropha JMP134] >g... 193 9e-48 ref|YP_001901053.1| Cache sensor-containing methyl-accepting che... 189 1e-46 ref|NP_521426.1| methyl-accepting chemotaxis transmembrane prote... 185 3e-45 ref|YP_002983115.1| Cache sensor-containing methyl-accepting che... 185 3e-45 ref|ZP_07675187.1| methyl-accepting chemotaxis protein [Ralstoni... 183 1e-44 >ref|YP_299328.1| histidine kinase [Ralstonia eutropha JMP134] gb|AAZ64484.1| Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer [Ralstonia eutropha JMP134] Length = 599 Score = 193 bits (491), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 93/181 (51%), Positives = 129/181 (71%), Gaps = 1/181 (0%) Query: 1 LLRSGGFSLTTAGWQDKHFVSSTPGLPANYDPTGRPWYQDSLKAKKPLVTRPYRSAT-GV 59 L ++G F +TTAGWQDK FV+S +P+ +DPT RPWY+++L A KP+VT+PY AT G Sbjct: 85 LQKAGAFPITTAGWQDKSFVASKDQMPSGFDPTARPWYKETLAAAKPIVTKPYADATTGK 144 Query: 60 ILVSFTAPILREGIVYGVVAGGVSLDTVRQVVRAIHPTPASIGFVVDAGGTVIAHPDEKL 119 VSF API+R+G+ GVV+ VSLD VR VV A+ PTP S+GFVVD ++AHPD K Sbjct: 145 PFVSFAAPIVRDGVTSGVVSAVVSLDGVRDVVTAVRPTPESLGFVVDKDANILAHPDAKY 204 Query: 120 LLKPATDIAPSLTVAQLDGMARDGSVSEVEMDGAGKWLRAVPIPGTDWRLVISLDRHDAG 179 + KPA +++ +LT L + +G+ E+E+DG K LRA PI GT+W+LV++LD+ +A Sbjct: 205 IRKPALELSQALTPQALASLESEGNPLEIELDGRMKLLRARPIHGTNWQLVVALDKAEAT 264 Query: 180 A 180 A Sbjct: 265 A 265 >ref|YP_001901053.1| Cache sensor-containing methyl-accepting chemotaxis sensory transducer [Ralstonia pickettii 12J] gb|ACD28621.1| methyl-accepting chemotaxis sensory transducer with Cache sensor [Ralstonia pickettii 12J] Length = 600 Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 95/178 (53%), Positives = 126/178 (70%), Gaps = 1/178 (0%) Query: 4 SGGFSLTTAGWQDKHFVSSTPGLPANYDPTGRPWYQDSLKAKKPLVTRPY-RSATGVILV 62 + GF + T GW DK F+S++ P +YDPTGRPWY+ ++ A + LVT+PY +TGV V Sbjct: 88 ANGFPIITIGWTDKSFISTSATTPKDYDPTGRPWYKQAIAAGQLLVTKPYGDVSTGVPYV 147 Query: 63 SFTAPILREGIVYGVVAGGVSLDTVRQVVRAIHPTPASIGFVVDAGGTVIAHPDEKLLLK 122 SF AP+++ G G ++G V LD VR+VV A+HPTP+S+ FVV G VIAHPD KL+LK Sbjct: 148 SFAAPLVKNGETTGALSGAVPLDGVREVVAAVHPTPSSLAFVVAKDGQVIAHPDAKLMLK 207 Query: 123 PATDIAPSLTVAQLDGMARDGSVSEVEMDGAGKWLRAVPIPGTDWRLVISLDRHDAGA 180 PATD+APSLTV L +A+ S EVE+ GA K L+A + GTDW LVI+LD+ +A A Sbjct: 208 PATDVAPSLTVDTLANLAKATSPLEVELAGAPKLLKAQAVQGTDWYLVIALDKAEATA 265 >ref|NP_521426.1| methyl-accepting chemotaxis transmembrane protein [Ralstonia solanacearum GMI1000] emb|CAD17095.1| putative methyl-accepting chemotaxis transmembrane protein [Ralstonia solanacearum GMI1000] Length = 646 Score = 185 bits (470), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 91/176 (51%), Positives = 123/176 (69%), Gaps = 1/176 (0%) Query: 6 GFSLTTAGWQDKHFVSSTPGLPANYDPTGRPWYQDSLKAKKPLVTRPY-RSATGVILVSF 64 GF +TT GW DK F S++ G P +YDPT RPWY+ ++ A KP VT+PY ++TGV VSF Sbjct: 136 GFPITTVGWTDKTFFSTSAGTPKDYDPTARPWYKSAIAAGKPTVTKPYGDASTGVPYVSF 195 Query: 65 TAPILREGIVYGVVAGGVSLDTVRQVVRAIHPTPASIGFVVDAGGTVIAHPDEKLLLKPA 124 AP++R G G ++G V LD VR+VV A+HPTP+S+ FVV G VIAHPD KL+LKP Sbjct: 196 AAPLMRNGAATGALSGAVPLDGVREVVAAVHPTPSSLAFVVARDGQVIAHPDAKLMLKPV 255 Query: 125 TDIAPSLTVAQLDGMARDGSVSEVEMDGAGKWLRAVPIPGTDWRLVISLDRHDAGA 180 T+++ +LT L +A+ + EVE+ GA K L+A + GTDW LVI+LD+ +A A Sbjct: 256 TEVSAALTPDALTSLAKATAPLEVELAGAAKLLKAQAVQGTDWYLVIALDKAEATA 311 >ref|YP_002983115.1| Cache sensor-containing methyl-accepting chemotaxis sensory transducer [Ralstonia pickettii 12D] gb|ACS64443.1| methyl-accepting chemotaxis sensory transducer with Cache sensor [Ralstonia pickettii 12D] Length = 600 Score = 185 bits (469), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 93/178 (52%), Positives = 124/178 (69%), Gaps = 1/178 (0%) Query: 4 SGGFSLTTAGWQDKHFVSSTPGLPANYDPTGRPWYQDSLKAKKPLVTRPY-RSATGVILV 62 + GF + T GW DK F+S++ P +YDPTGRPWY+ ++ A + LVT+PY +TGV V Sbjct: 88 ANGFPIITIGWTDKSFISTSATTPKDYDPTGRPWYKQAIAAGQLLVTKPYGDVSTGVPYV 147 Query: 63 SFTAPILREGIVYGVVAGGVSLDTVRQVVRAIHPTPASIGFVVDAGGTVIAHPDEKLLLK 122 SF AP+++ G G ++G V LD VR+VV A+HPTP+S+ FVV G VIAHPD KL+LK Sbjct: 148 SFAAPLVKNGETTGALSGAVPLDGVREVVAAVHPTPSSLAFVVAKDGQVIAHPDAKLMLK 207 Query: 123 PATDIAPSLTVAQLDGMARDGSVSEVEMDGAGKWLRAVPIPGTDWRLVISLDRHDAGA 180 PATD+A SLT L +A+ S EVE+ GA K L+A + GTDW LVI+LD+ +A A Sbjct: 208 PATDVAASLTADTLGNLAKATSPLEVELAGAPKLLKAQAVQGTDWYLVIALDKAEATA 265 >ref|ZP_07675187.1| methyl-accepting chemotaxis protein [Ralstonia sp. 5_7_47FAA] gb|EFP66477.1| methyl-accepting chemotaxis protein [Ralstonia sp. 5_7_47FAA] Length = 600 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 92/178 (51%), Positives = 122/178 (68%), Gaps = 1/178 (0%) Query: 4 SGGFSLTTAGWQDKHFVSSTPGLPANYDPTGRPWYQDSLKAKKPLVTRPY-RSATGVILV 62 + GF + T GW DK F+S++ P +YDPT RPWY+ +L A + LVT+PY +TGV V Sbjct: 88 ANGFPIITIGWTDKSFISTSATTPKDYDPTARPWYKQALAAGQLLVTKPYGDVSTGVPYV 147 Query: 63 SFTAPILREGIVYGVVAGGVSLDTVRQVVRAIHPTPASIGFVVDAGGTVIAHPDEKLLLK 122 SF AP+++ G G ++G V LD VR+VV A+HPTP+S+ FVV G VIAHPD KL+LK Sbjct: 148 SFAAPLVKNGETTGALSGAVPLDGVREVVAAVHPTPSSLAFVVAKDGQVIAHPDAKLMLK 207 Query: 123 PATDIAPSLTVAQLDGMARDGSVSEVEMDGAGKWLRAVPIPGTDWRLVISLDRHDAGA 180 PATD+A SLT L + + S EVE+ GA K L+A + GTDW LVI+LD+ +A A Sbjct: 208 PATDVAASLTAETLANLVKATSPLEVELAGAPKLLKAQAVQGTDWYLVIALDKAEATA 265