BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0308.p (293 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003694684.1| LysR family transcriptional regulator [Stark... 426 e-117 ref|YP_003909455.1| LysR family transcriptional regulator [Burkh... 419 e-115 ref|YP_001115435.1| LysR family transcriptional regulator [Burkh... 405 e-111 ref|YP_004280228.1| LysR family transcriptional regulator [Agrob... 396 e-108 gb|EGE60990.1| LysR family transcriptional regulator [Rhizobium ... 394 e-108 >ref|YP_003694684.1| LysR family transcriptional regulator [Starkeya novella DSM 506] gb|ADH90065.1| transcriptional regulator, LysR family [Starkeya novella DSM 506] Length = 286 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 200/284 (70%), Positives = 241/284 (84%) Query: 1 MEWSDVRIFLAVARTGTLGAAARLLHVSHPTIGRRLRALEEATGQVLFQRTADGFVLTEE 60 MEWSDVRIFLA+AR+GTLGAAAR LH+SHPT+GRRLRALE+ATG LFQRTADGFVLTEE Sbjct: 1 MEWSDVRIFLAIARSGTLGAAARTLHLSHPTVGRRLRALEQATGHTLFQRTADGFVLTEE 60 Query: 61 GMGVLPLAEQIEEGALAMERRLAGKQRTLDGILRITSADWFGAYVLPPVLAEYAASYPLV 120 G VLPLAEQ+EEGALAMERRLAG+++ L G LRI+SADWFGAYVLPP++A+YA +YP V Sbjct: 61 GNAVLPLAEQMEEGALAMERRLAGQEQNLQGTLRISSADWFGAYVLPPIIADYAKTYPHV 120 Query: 121 EIEVLTGTRLFNLAQREADIAFRIVPFEEQDIVQRRLLRMRYGVYVATASPDPVIGDGSG 180 +IEVLTGTRLF+LAQREADIAFRIVPF+ D+VQRRL+R+ YG YVA SP+PV GDG+G Sbjct: 121 DIEVLTGTRLFSLAQREADIAFRIVPFDSPDVVQRRLIRLAYGAYVAAGSPEPVYGDGAG 180 Query: 181 IRLITPDTFSGTFPDTAWLKEMFPNAGVVLQSNNRSIKAQMCAMGMGIAVLPRPLGDQVN 240 RLIT DT +G FPD AWL E FPNA +L+SNNR+++ +MC+ G+GI VLP+ +G+Q+ Sbjct: 181 FRLITHDTSTGQFPDIAWLTESFPNARPILRSNNRNVQGRMCSQGVGICVLPQVVGNQMP 240 Query: 241 GIRLLELGVEPSHREIWMGYHRDLRRLNRLRAFVDLAVKHLANA 284 +R L L EP R+IWMGYHRD+RRL RLRAF+ +H+ANA Sbjct: 241 ALRRLNLPAEPPGRDIWMGYHRDIRRLQRLRAFITTMTQHIANA 284 >ref|YP_003909455.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN60164.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 283 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 210/283 (74%), Positives = 243/283 (85%) Query: 1 MEWSDVRIFLAVARTGTLGAAARLLHVSHPTIGRRLRALEEATGQVLFQRTADGFVLTEE 60 MEWSDVRIFLA+ARTGTLGAAAR L +SHPTIGRRLRALE + GQVLFQRTADGFVLTEE Sbjct: 1 MEWSDVRIFLAIARTGTLGAAARTLQLSHPTIGRRLRALEASMGQVLFQRTADGFVLTEE 60 Query: 61 GMGVLPLAEQIEEGALAMERRLAGKQRTLDGILRITSADWFGAYVLPPVLAEYAASYPLV 120 G ++PLAE +EE ALAMERRL G+Q+ L+G L+++SADWFGAYVLPPV+AEYA YP V Sbjct: 61 GSVIVPLAEHMEESALAMERRLTGEQQKLEGTLKVSSADWFGAYVLPPVIAEYAREYPFV 120 Query: 121 EIEVLTGTRLFNLAQREADIAFRIVPFEEQDIVQRRLLRMRYGVYVATASPDPVIGDGSG 180 ++E+LTGTRLF+LAQREAD+AFRIVPF+ DIVQRRL +MRYGVYVA + PDP GDGSG Sbjct: 121 QMEILTGTRLFSLAQREADVAFRIVPFDGPDIVQRRLTQMRYGVYVAASHPDPAEGDGSG 180 Query: 181 IRLITPDTFSGTFPDTAWLKEMFPNAGVVLQSNNRSIKAQMCAMGMGIAVLPRPLGDQVN 240 RLI DT +G FPD WLK FPNAGVVLQSNNR+++AQMC G+GIAVLPRP+GDQ+ Sbjct: 181 HRLIAMDTSTGAFPDIDWLKNRFPNAGVVLQSNNRNVQAQMCGRGLGIAVLPRPVGDQLP 240 Query: 241 GIRLLELGVEPSHREIWMGYHRDLRRLNRLRAFVDLAVKHLAN 283 +R L+L EP HR+IWMGYHRDLRRL RLRAFVDL +KH+AN Sbjct: 241 TVRRLDLRDEPPHRDIWMGYHRDLRRLGRLRAFVDLVIKHVAN 283 >ref|YP_001115435.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gb|ABO59180.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 284 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 216/283 (76%), Positives = 245/283 (86%) Query: 1 MEWSDVRIFLAVARTGTLGAAARLLHVSHPTIGRRLRALEEATGQVLFQRTADGFVLTEE 60 MEWSDVRIFLA+AR GTLGAAAR L +SHPTIGRRLRALE + GQVLFQRTADGFVLTEE Sbjct: 1 MEWSDVRIFLAIARMGTLGAAARALALSHPTIGRRLRALETSMGQVLFQRTADGFVLTEE 60 Query: 61 GMGVLPLAEQIEEGALAMERRLAGKQRTLDGILRITSADWFGAYVLPPVLAEYAASYPLV 120 G+ +LPLAEQ+EE AL MERRL G+Q+ L+G L+I+S+DWFGAYVLPPV+AEY+ YPLV Sbjct: 61 GVAILPLAEQMEESALTMERRLTGEQQKLEGTLKISSSDWFGAYVLPPVIAEYSRDYPLV 120 Query: 121 EIEVLTGTRLFNLAQREADIAFRIVPFEEQDIVQRRLLRMRYGVYVATASPDPVIGDGSG 180 EI+VLTGTRLFNLAQREAD+AFRIVPF QDIVQRRL RMRYGVYVA A DPV GDG+G Sbjct: 121 EIDVLTGTRLFNLAQREADVAFRIVPFTGQDIVQRRLTRMRYGVYVAAAHADPVEGDGAG 180 Query: 181 IRLITPDTFSGTFPDTAWLKEMFPNAGVVLQSNNRSIKAQMCAMGMGIAVLPRPLGDQVN 240 RLI DT +G+FPD WLK FPNAGVVLQSNNR+++AQMC G+GIAVLPRP+GDQ+ Sbjct: 181 HRLIAMDTSTGSFPDIDWLKARFPNAGVVLQSNNRNVQAQMCGRGLGIAVLPRPVGDQLA 240 Query: 241 GIRLLELGVEPSHREIWMGYHRDLRRLNRLRAFVDLAVKHLAN 283 IR LEL EP R+IWMGYHRDLRRL+RLRAFVDLAVKH+ + Sbjct: 241 TIRRLELRDEPPQRDIWMGYHRDLRRLHRLRAFVDLAVKHIGS 283 >ref|YP_004280228.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3] gb|ADY67850.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] Length = 287 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/283 (69%), Positives = 235/283 (83%) Query: 1 MEWSDVRIFLAVARTGTLGAAARLLHVSHPTIGRRLRALEEATGQVLFQRTADGFVLTEE 60 MEWSDV+IFLA+AR+GTLG+AAR LH SHPT+GRRLRALEEA G LFQRTADG VLTEE Sbjct: 1 MEWSDVKIFLAIARSGTLGSAARALHTSHPTVGRRLRALEEAIGHTLFQRTADGLVLTEE 60 Query: 61 GMGVLPLAEQIEEGALAMERRLAGKQRTLDGILRITSADWFGAYVLPPVLAEYAASYPLV 120 G G++ LAEQ+EEGALAMERRLAG+++ L G LRI+SADWFGAYVLPP+LA+++ +YP V Sbjct: 61 GHGIIALAEQMEEGALAMERRLAGQEQNLKGNLRISSADWFGAYVLPPILADFSKAYPNV 120 Query: 121 EIEVLTGTRLFNLAQREADIAFRIVPFEEQDIVQRRLLRMRYGVYVATASPDPVIGDGSG 180 ++E+LTGTRLFNLAQREAD+AFRIVPF+ D++QRRL R+ Y VY+A SPDP GDG+G Sbjct: 121 DVEILTGTRLFNLAQREADVAFRIVPFDTADVIQRRLFRLEYDVYIAEESPDPKYGDGTG 180 Query: 181 IRLITPDTFSGTFPDTAWLKEMFPNAGVVLQSNNRSIKAQMCAMGMGIAVLPRPLGDQVN 240 RLIT DT +G FPD AWL E FPNA VL+SNNR+++A+MC G+GIAVLPR +G+Q+ Sbjct: 181 FRLITHDTSTGQFPDIAWLTESFPNARPVLRSNNRNVQARMCKQGIGIAVLPRVVGNQIP 240 Query: 241 GIRLLELGVEPSHREIWMGYHRDLRRLNRLRAFVDLAVKHLAN 283 GIR LEL P R+IWMGYHRDLRRL RLRAF+ HL N Sbjct: 241 GIRRLELPKPPPARDIWMGYHRDLRRLQRLRAFIATVSDHLTN 283 >gb|EGE60990.1| LysR family transcriptional regulator [Rhizobium etli CNPAF512] Length = 289 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/284 (69%), Positives = 233/284 (82%) Query: 1 MEWSDVRIFLAVARTGTLGAAARLLHVSHPTIGRRLRALEEATGQVLFQRTADGFVLTEE 60 +EWSDV+IFLAVAR+GTLG AAR LH SHPT+GRRLR LEEA G LFQRTADG VLTEE Sbjct: 3 VEWSDVKIFLAVARSGTLGGAARALHTSHPTVGRRLRTLEEAIGHTLFQRTADGLVLTEE 62 Query: 61 GMGVLPLAEQIEEGALAMERRLAGKQRTLDGILRITSADWFGAYVLPPVLAEYAASYPLV 120 G G++ LAEQ+EEGALAMERRLAG+++ L G LRI+SADWFGAYVLPP+LA+++ YP V Sbjct: 63 GHGIIALAEQMEEGALAMERRLAGQEQNLKGNLRISSADWFGAYVLPPILADFSKDYPNV 122 Query: 121 EIEVLTGTRLFNLAQREADIAFRIVPFEEQDIVQRRLLRMRYGVYVATASPDPVIGDGSG 180 ++E+LTGTRLFNLAQREAD+AFRI+PF D++QRRL R+ YGVY+A SPDP GDG+G Sbjct: 123 DVEILTGTRLFNLAQREADVAFRIIPFNNADVIQRRLFRLEYGVYIAEESPDPKFGDGTG 182 Query: 181 IRLITPDTFSGTFPDTAWLKEMFPNAGVVLQSNNRSIKAQMCAMGMGIAVLPRPLGDQVN 240 RLIT DT +G FPD AWL E FPNA VL+SNNR+++ +MC G+GIAVLPR +G+Q+ Sbjct: 183 FRLITHDTSTGQFPDIAWLVESFPNARPVLRSNNRNVQGRMCKQGVGIAVLPRVVGNQIP 242 Query: 241 GIRLLELGVEPSHREIWMGYHRDLRRLNRLRAFVDLAVKHLANA 284 GIR LEL P R+IWMGYHRDLRRL RLRAF+ HLANA Sbjct: 243 GIRRLELPKPPPTRDIWMGYHRDLRRLQRLRAFIATVSDHLANA 286