BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0301.p (283 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001354777.1| AraC family transcriptional regulator [Janth... 410 e-112 ref|ZP_02906389.1| transcriptional regulator, AraC family [Burkh... 293 2e-77 ref|YP_776306.1| AraC family transcriptional regulator [Burkhold... 293 3e-77 gb|EGD06122.1| AraC family transcriptional regulator [Burkholder... 291 7e-77 ref|YP_001811601.1| AraC family transcriptional regulator [Burkh... 291 1e-76 >ref|YP_001354777.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR90785.1| transcriptional regulator, AraC family [Janthinobacterium sp. Marseille] Length = 310 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 220/269 (81%), Positives = 243/269 (90%) Query: 1 VRGKLEEAPLFCCVVLEGKIRYTVDELQLIAEAGDFLLIPSMSTFSASSFDVPLEDEWQS 60 VRG+ ++APLFCCVVLEGK+RY VDE LI EAGDFLLIPSMS FS SSF+VP + EWQ+ Sbjct: 30 VRGEFDDAPLFCCVVLEGKMRYMVDESPLIVEAGDFLLIPSMSKFSVSSFEVPADHEWQT 89 Query: 61 EPVVLENGEHRNGSASAEADVRSLVGFCQLTSPDATLLLTLLPKVILIRGDVRLTALVQL 120 EP +LENGEHRNG S EADVR+LVGFC LTSPD+ LLLTLLPK++ IRGD+RL+ALVQL Sbjct: 90 EPALLENGEHRNGLLSVEADVRTLVGFCHLTSPDSALLLTLLPKLVHIRGDLRLSALVQL 149 Query: 121 AIDEARSQRPARDVVLERLLEVLLIEALRSSNNAVTSPGLLRGLADTRLANAIRRIHESP 180 IDE+RSQRPAR+VVLERLLEVLLIEALRSSNNA TSPGLLRGLAD RLANAIR IHESP Sbjct: 150 VIDESRSQRPAREVVLERLLEVLLIEALRSSNNAGTSPGLLRGLADIRLANAIRCIHESP 209 Query: 181 EEPWTVALLAKESALSRSTFFQRFSTALGVTPMDYLLSWRMALAKKFLDQKKSITVVAAL 240 E+PWTVALLAK SALSRSTFF+RFS ALGVTPMDYLLSWRMALA+ FL++KK+I VAAL Sbjct: 210 EQPWTVALLAKASALSRSTFFERFSAALGVTPMDYLLSWRMALARNFLERKKTIAEVAAL 269 Query: 241 VGYSSSSTFTVAFTRHTGMPPGQYSRLRQ 269 VGYSSSSTFTVAFTRHTGMPPGQYS+ RQ Sbjct: 270 VGYSSSSTFTVAFTRHTGMPPGQYSKSRQ 298 >ref|ZP_02906389.1| transcriptional regulator, AraC family [Burkholderia ambifaria MEX-5] gb|EDT42513.1| transcriptional regulator, AraC family [Burkholderia ambifaria MEX-5] Length = 305 Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 151/268 (56%), Positives = 194/268 (72%), Gaps = 6/268 (2%) Query: 11 FCCVVLEGKIRYTVD---ELQLIAEAGDFLLIPSMSTFSASSFDVPLEDEWQSEPVVLEN 67 F CVVLEG R +D ++L+ GDF+LIP+ + SS ++P + PVVL+N Sbjct: 39 FYCVVLEGGCRVAIDGHPPIELLP--GDFVLIPAAYGVAISSLELPPPGVETAAPVVLDN 96 Query: 68 GEHRNGSASAEADVRSLVGFCQLTSPDATLLLTLLPKVILIRGDVRLTALVQLAIDEARS 127 GE+R G A D R + G C +SPDA LL++LLP+ + +RG+ RLT LVQL DE+R+ Sbjct: 97 GEYRIGDARRPVDARMMAGHCSFSSPDAALLVSLLPQYVHVRGEPRLTTLVQLVRDESRA 156 Query: 128 QRPARDVVLERLLEVLLIEALRSSNNAVTSPGLLRGLADTRLANAIRRIHESPEEPWTVA 187 QRPAR++VL RL+EVLLIEALR S + TSPGL+RGLAD+RLA AIR +HE P PWTV Sbjct: 157 QRPARELVLSRLVEVLLIEALRFSADTGTSPGLVRGLADSRLAAAIRGMHERPAHPWTVI 216 Query: 188 LLAKESALSRSTFFQRFSTALGVTPMDYLLSWRMALAKKFLDQKKS-ITVVAALVGYSSS 246 LAKE+ALSRSTFF+RFS A+GV PM+YLL+WRMALAK L + + I +A VGYSS+ Sbjct: 217 ELAKEAALSRSTFFERFSRAVGVAPMEYLLTWRMALAKNLLRRDEGRIAEIAGRVGYSSA 276 Query: 247 STFTVAFTRHTGMPPGQYSRLRQNAEAE 274 STF+VAFTRH G PP QY+R + AE++ Sbjct: 277 STFSVAFTRHVGRPPAQYARDERAAESD 304 >ref|YP_776306.1| AraC family transcriptional regulator [Burkholderia ambifaria AMMD] gb|ABI89972.1| transcriptional regulator, AraC family [Burkholderia ambifaria AMMD] Length = 325 Score = 293 bits (749), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 151/268 (56%), Positives = 194/268 (72%), Gaps = 6/268 (2%) Query: 11 FCCVVLEGKIRYTVD---ELQLIAEAGDFLLIPSMSTFSASSFDVPLEDEWQSEPVVLEN 67 F CVVLEG R +D ++L+ GDF+LIP+ + SS ++P + PVVL+N Sbjct: 59 FYCVVLEGGCRVAIDGHPPIELLP--GDFVLIPAAYGVAISSLELPPPGVETAAPVVLDN 116 Query: 68 GEHRNGSASAEADVRSLVGFCQLTSPDATLLLTLLPKVILIRGDVRLTALVQLAIDEARS 127 GE+R G AS D R + G C +SPDA LL++LLP+ + +RG+ RLT LVQL DE+R+ Sbjct: 117 GEYRIGDASRPVDARMMAGHCSFSSPDAALLVSLLPQYVHVRGEPRLTTLVQLVRDESRA 176 Query: 128 QRPARDVVLERLLEVLLIEALRSSNNAVTSPGLLRGLADTRLANAIRRIHESPEEPWTVA 187 QRPAR++VL RL+EVLLIEALR S + TSPGL+RGLAD+RLA AIR +HE P PWTV Sbjct: 177 QRPARELVLSRLVEVLLIEALRFSADTGTSPGLVRGLADSRLAAAIRGMHERPAHPWTVV 236 Query: 188 LLAKESALSRSTFFQRFSTALGVTPMDYLLSWRMALAKKFLDQKKS-ITVVAALVGYSSS 246 LAKE+ALSRSTFF+RFS A+GV PM+YLL+WRMALAK L + + I +A VGYSS+ Sbjct: 237 ELAKEAALSRSTFFERFSRAVGVAPMEYLLTWRMALAKNLLRRDEGRIAEIAGRVGYSSA 296 Query: 247 STFTVAFTRHTGMPPGQYSRLRQNAEAE 274 STF+VAFTRH G PP QY+R + A ++ Sbjct: 297 STFSVAFTRHVGRPPAQYARDERAAASD 324 >gb|EGD06122.1| AraC family transcriptional regulator [Burkholderia sp. TJI49] Length = 305 Score = 291 bits (746), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 151/267 (56%), Positives = 191/267 (71%), Gaps = 6/267 (2%) Query: 11 FCCVVLEGKIRYTVD---ELQLIAEAGDFLLIPSMSTFSASSFDVPLEDEWQSEPVVLEN 67 F C VL+G R +D L+L+A GDF+LIP+ + SS D P + + PV L+N Sbjct: 39 FYCAVLDGGCRVAIDGHPPLELLA--GDFVLIPAAYGIAMSSLDAPPPEVETAAPVALDN 96 Query: 68 GEHRNGSASAEADVRSLVGFCQLTSPDATLLLTLLPKVILIRGDVRLTALVQLAIDEARS 127 GE R G A D+R + G C SPD+ LL++LLP+ + +RG+ RLT LVQL DEAR+ Sbjct: 97 GEFRIGDAGNAVDMRMMAGNCSFRSPDSALLVSLLPQYVHVRGEPRLTTLVQLVRDEART 156 Query: 128 QRPARDVVLERLLEVLLIEALRSSNNAVTSPGLLRGLADTRLANAIRRIHESPEEPWTVA 187 QRPAR++VL RL+EVLLIEALR S N SPGL+RGLAD+RLA AIR +H P+ PWTV Sbjct: 157 QRPARELVLSRLVEVLLIEALRLSANTDASPGLVRGLADSRLAAAIREMHARPKHPWTVV 216 Query: 188 LLAKESALSRSTFFQRFSTALGVTPMDYLLSWRMALAKKFLDQKKS-ITVVAALVGYSSS 246 LAKE+ALSRSTFF+RFS A+GV PM+YLL+WRMALAK L + ++ I +AA VGYSS+ Sbjct: 217 ELAKEAALSRSTFFERFSRAVGVAPMEYLLTWRMALAKNLLRRNEARIAEIAAHVGYSSA 276 Query: 247 STFTVAFTRHTGMPPGQYSRLRQNAEA 273 STF+VAFTRH G PP QY+R + A A Sbjct: 277 STFSVAFTRHVGKPPAQYAREERGAIA 303 >ref|YP_001811601.1| AraC family transcriptional regulator [Burkholderia ambifaria MC40-6] gb|ACB67385.1| transcriptional regulator, AraC family [Burkholderia ambifaria MC40-6] Length = 305 Score = 291 bits (744), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 150/268 (55%), Positives = 193/268 (72%), Gaps = 6/268 (2%) Query: 11 FCCVVLEGKIRYTVD---ELQLIAEAGDFLLIPSMSTFSASSFDVPLEDEWQSEPVVLEN 67 F CVVLEG R +D ++L+ GDF+LIP+ + SS ++P + PVVL+N Sbjct: 39 FYCVVLEGGCRVAIDGHPPIELLP--GDFVLIPAAYGVAISSLELPPPGVETAAPVVLDN 96 Query: 68 GEHRNGSASAEADVRSLVGFCQLTSPDATLLLTLLPKVILIRGDVRLTALVQLAIDEARS 127 GE+R G AS D R + G C +SPDA LL++LLP+ + +RG+ RLT LVQL DE+R+ Sbjct: 97 GEYRIGDASRPVDARLMAGHCSFSSPDAALLVSLLPQYVHVRGEPRLTTLVQLVRDESRA 156 Query: 128 QRPARDVVLERLLEVLLIEALRSSNNAVTSPGLLRGLADTRLANAIRRIHESPEEPWTVA 187 QRPAR++VL RL+EVLLIEALR S + SPGL+RGLAD+RLA AIR +HE P PWTV Sbjct: 157 QRPARELVLSRLVEVLLIEALRFSADTGASPGLVRGLADSRLAAAIRAMHERPAHPWTVV 216 Query: 188 LLAKESALSRSTFFQRFSTALGVTPMDYLLSWRMALAKKFLDQKKS-ITVVAALVGYSSS 246 LAKE+ALSRSTFF+RFS A+GV PM+YLL+WRMALAK L + + I +A VGYSS+ Sbjct: 217 ELAKEAALSRSTFFERFSRAVGVAPMEYLLTWRMALAKNLLRRDEGRIAEIAGRVGYSSA 276 Query: 247 STFTVAFTRHTGMPPGQYSRLRQNAEAE 274 STF+VAFTRH G PP QY+R + A ++ Sbjct: 277 STFSVAFTRHVGRPPAQYARDERAAASD 304