BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0294.p (457 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776577.1| outer membrane protein [Herbaspirillum serop... 645 0.0 ref|ZP_08387550.1| efflux transporter, outer membrane factor (OM... 426 e-117 ref|YP_001672155.1| RND efflux system outer membrane lipoprotein... 415 e-114 ref|YP_001264989.1| RND efflux system outer membrane lipoprotein... 394 e-107 ref|YP_004555078.1| NodT family RND efflux system outer membrane... 380 e-103 >ref|YP_003776577.1| outer membrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64669.1| outer membrane protein [Herbaspirillum seropedicae SmR1] Length = 491 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/455 (75%), Positives = 388/455 (85%), Gaps = 15/455 (3%) Query: 2 QSGRFVRAQDAASAEAPVNRWWEALGDPVLNDLVQRALDANPNLGIARAXALDANPNLGI 61 G+FVR D+A+ AP+N+WW+ LGD L L++RAL ANPNLGIARA L Sbjct: 46 HGGQFVRGGDSATTTAPINQWWQGLGDAQLTSLIERALQANPNLGIARA-------RLQQ 98 Query: 62 ARAALNLEQANALPSVGASALAGHARLPPINLGS-SSGASTSSGSSTSLNLYSLGFDATW 120 +RA L LEQANA PSVGASALAGHARLPP NLG+ + GAS+ +GS TS NLYSLGFDA+W Sbjct: 99 SRAGLALEQANAAPSVGASALAGHARLPPANLGALTGGASSGNGSPTSANLYSLGFDASW 158 Query: 121 EADLFGGHRRAVQAANATAEAAEASLADVQVSLEAEVANAYINLRDRQRRIRLADESIRA 180 E DLFGG RRAVQAA ATA+AA+ASLADVQVSL AEVANAYI+LRDRQ+R+ L ++++A Sbjct: 159 EIDLFGGRRRAVQAATATADAAQASLADVQVSLAAEVANAYISLRDRQQRLALGQQAVQA 218 Query: 181 QEQMATLTQQRLERGTASNLDLIRVRNQLDGTRSDQVPLQADLESYLNQLATLVGQEPGT 240 QEQM LT QR+ERGTAS+LD +R++NQLD +R+D VPLQAD ++YLNQLATL+GQEPGT Sbjct: 219 QEQMLQLTGQRVERGTASSLDQLRIQNQLDASRADLVPLQADRDAYLNQLATLLGQEPGT 278 Query: 241 LDEMLVANANAENAENAVPLPPAQVAAGDPQALLRRRPDIRAAERTLAADTAKIGQAEAA 300 LD L A VPLPP QVA GDP +LLRRRPD+RAAERTLAADTAKIGQAEAA Sbjct: 279 LDGELAATV-------PVPLPPQQVAVGDPVSLLRRRPDVRAAERTLAADTAKIGQAEAA 331 Query: 301 RYPSLKLFGVIGLGGTHPSDLTKLDDFTAVAAPMLSWNFLDFGRAKARVTQAERVRDEAE 360 RYPSLKLFGVIGLGGTHPSDLT+LDDF A+ APMLSWNFLDFGRAKARVTQAERVRDEAE Sbjct: 332 RYPSLKLFGVIGLGGTHPSDLTRLDDFAALGAPMLSWNFLDFGRAKARVTQAERVRDEAE 391 Query: 361 IKYRQSVLEALRDAEDSLSRFRYGRVTVATVARTKASADRALDLAQQRYRAGTGTLIDVL 420 +KYRQSVLEALRDAED+LSRFRYGRV+VAT+ARTK SADRAL LA+QRY+AGTGTLI+VL Sbjct: 392 MKYRQSVLEALRDAEDALSRFRYGRVSVATIARTKLSADRALALARQRYQAGTGTLIEVL 451 Query: 421 DTTRQQLSAQQNLSQAEAALTRSFVGIQKALGLGW 455 DTTRQQ++AQQNL QAEA LTRSFVGIQKALGLGW Sbjct: 452 DTTRQQITAQQNLLQAEANLTRSFVGIQKALGLGW 486 >ref|ZP_08387550.1| efflux transporter, outer membrane factor (OMF) lipo, NodT family protein [Sphingomonas sp. S17] gb|EGI56219.1| efflux transporter, outer membrane factor (OMF) lipo, NodT family protein [Sphingomonas sp. S17] Length = 497 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 255/467 (54%), Positives = 311/467 (66%), Gaps = 31/467 (6%) Query: 6 FVRAQDAASAEAP-VNRWWEALGDPVLNDLVQRALDANPNLGIARAXALDANPNLGIARA 64 F RA + + AP V WW L DP+L L ++AL ANPN+ +A+A L ARA Sbjct: 39 FARADASVATTAPAVAEWWTTLNDPMLTWLEEQALAANPNVAVAQA-------RLKQARA 91 Query: 65 ALNLEQANALPSVGASALAGHARLPPINLGSSSGASTSSGSST----------------S 108 +L LE+AN P+ ASA HA LP INLG S Sbjct: 92 SLRLERANQAPNANASATYLHADLPGINLGGGQQQGGGEQGGGQGGANGGAAGGGSGGQS 151 Query: 109 LNLYSLGFDATWEADLFGGHRRAVQAANATAEAAEASLADVQVSLEAEVANAYINLRDRQ 168 L+ ++LGFDA+WE DLFGG RR V+AA A A AAEA++AD QVSL A+VA AY+ LRD Q Sbjct: 152 LDFFNLGFDASWEIDLFGGQRRTVEAARANAAAAEANVADAQVSLSADVAQAYVGLRDAQ 211 Query: 169 RRIRLADESIRAQEQMATLTQQRLERGTASNLDLIRVRNQLDGTRSDQVPLQADLESYLN 228 +R+ LA E+ R Q LTQQR GTAS L++ R+RNQ++ T + +PL A +E+YLN Sbjct: 212 QRLILAREASRMQRDTLNLTQQRFNNGTASQLEVERLRNQVESTDAQILPLSASVETYLN 271 Query: 229 QLATLVGQEPGTLDEMLVANANAENAENAVPLPPAQVAAGDPQALLRRRPDIRAAERTLA 288 LA L+G+ PGTLD+ L A VPLPPAQVA GDP +LL+RRPDIRAAER LA Sbjct: 272 ALAILIGEAPGTLDQRLGQAA-------PVPLPPAQVAVGDPTSLLQRRPDIRAAERRLA 324 Query: 289 ADTAKIGQAEAARYPSLKLFGVIGLGGTHPSDLTKLDDFTAVAAPMLSWNFLDFGRAKAR 348 A TA+IG AEAA++P L L G+IG+GGT LT LD+ + APML WN L+FGRA AR Sbjct: 325 AQTARIGVAEAAKFPRLNLMGIIGIGGTSLDALTDLDNLVTLGAPMLQWNVLNFGRANAR 384 Query: 349 VTQAERVRDEAEIKYRQSVLEALRDAEDSLSRFRYGRVTVATVARTKASADRALDLAQQR 408 V QAE RDEAE +YR +VL ALRDAED+L+RFR R TVAT+AR KASADR+ L QQR Sbjct: 385 VGQAEGARDEAEAQYRGAVLSALRDAEDALARFRARRNTVATLARAKASADRSAVLMQQR 444 Query: 409 YRAGTGTLIDVLDTTRQQLSAQQNLSQAEAALTRSFVGIQKALGLGW 455 YRAG TLID LD RQ++SAQQ+LSQA A LT +V +QKALGLGW Sbjct: 445 YRAGAATLIDTLDAERQRVSAQQSLSQAVAGLTNDYVALQKALGLGW 491 >ref|YP_001672155.1| RND efflux system outer membrane lipoprotein [Caulobacter sp. K31] gb|ABZ74496.1| RND efflux system, outer membrane lipoprotein, NodT family [Caulobacter sp. K31] Length = 482 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 245/457 (53%), Positives = 306/457 (66%), Gaps = 19/457 (4%) Query: 3 SGRFVRAQDAASAEAP-VNRWWEALGDPVLNDLVQRALDANPNLGIARAXALDANPNLGI 61 S RFVR +D A P V RWWE L DP+L+ + +RAL ANPN+ ++A L Sbjct: 33 SSRFVRMEDTAVIATPLVARWWETLDDPILDGIEERALRANPNMAASQA-------RLRQ 85 Query: 62 ARAALNLEQANALPSVGASALAGHARLPPINLGSSSGASTSSGSST---SLNLYSLGFDA 118 ARA L +E+ANA P+V A ALAGH R+P G++ GA + T S +LY+ FDA Sbjct: 86 ARAMLRIERANAAPNVAAGALAGHGRVPESGSGAA-GAMIPALVGTDERSFDLYTAAFDA 144 Query: 119 TWEADLFGGHRRAVQAANATAEAAEASLADVQVSLEAEVANAYINLRDRQRRIRLADESI 178 +WE DLFGG RR V+AA ATA+AAEA+LAD QVSL AEVA+AYI LRD Q+RI LA S+ Sbjct: 145 SWEIDLFGGRRRGVEAATATAQAAEATLADAQVSLTAEVAHAYIGLRDTQKRIVLAKRSV 204 Query: 179 RAQEQMATLTQQRLERGTASNLDLIRVRNQLDGTRSDQVPLQADLESYLNQLATLVGQEP 238 Q+QM LT+Q+ ERG AS LD+ R+ Q + T + PL A E ++N LA L G++P Sbjct: 205 ELQQQMLDLTRQQFERGVASALDVERLSMQFENTNARVAPLVAQAEGFMNALAWLCGEQP 264 Query: 239 GTLDEMLVANANAENAENAVPLPPAQVAAGDPQALLRRRPDIRAAERTLAADTAKIGQAE 298 G LD +L A AV + GDP+A+LRRRPD+RAAER LAADTA+IG AE Sbjct: 265 GALDAILDPPRPAPLPPPAVAI-------GDPEAMLRRRPDVRAAERRLAADTARIGVAE 317 Query: 299 AARYPSLKLFGVIGLGGTHPSDLTKLDDFTAVAAPMLSWNFLDFGRAKARVTQAERVRDE 358 AAR+P L GVIG+GGT PSDLT LDDF A+ AP L W+ L+FGR + ++ Q E RDE Sbjct: 318 AARFPRLSWMGVIGIGGTQPSDLTHLDDFVALGAPTLQWSVLNFGRVQGQIRQRESARDE 377 Query: 359 AEIKYRQSVLEALRDAEDSLSRFRYGRVTVATVARTKASADRALDLAQQRYRAGTGTLID 418 AE Y +VL ALRD ED+L+RFR GR TVA +AR KASADR+ +L QQ YRAG +LID Sbjct: 378 AEALYDAAVLGALRDTEDALARFRAGRATVAILARAKASADRSANLTQQNYRAGRASLID 437 Query: 419 VLDTTRQQLSAQQNLSQAEAALTRSFVGIQKALGLGW 455 L R ++ A+ LS A A LT +V +QKALGLGW Sbjct: 438 ALGAERHRIDAEDGLSAATAGLTADYVALQKALGLGW 474 >ref|YP_001264989.1| RND efflux system outer membrane lipoprotein [Sphingomonas wittichii RW1] gb|ABQ70851.1| RND efflux system, outer membrane lipoprotein, NodT family [Sphingomonas wittichii RW1] Length = 480 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 229/436 (52%), Positives = 294/436 (67%), Gaps = 20/436 (4%) Query: 26 LGDPVLNDLVQRALDANPNLGIARAXALDANPNLGIARAALNLEQANALPSVGASALAGH 85 LGDPVL++L +RAL +P++ IA+A L AR+AL LE+AN+LP ASA+ H Sbjct: 58 LGDPVLDELERRALAGSPSVAIAQA-------RLNQARSALGLERANSLPKANASAVYVH 110 Query: 86 ARLPPINLGSSS------GASTSSGSSTSLNLYSLGFDATWEADLFGGHRRAVQAANATA 139 AR+P ++LGSS+ G + SLN Y++GFDA+WE DLFGG RR ++AA A+ Sbjct: 111 ARVPGVDLGSSNQNGGTGGGGGTGEDQESLNFYNVGFDASWEIDLFGGQRRNLEAARASL 170 Query: 140 EAAEASLADVQVSLEAEVANAYINLRDRQRRIRLADESIRAQEQMATLTQQRLERGTASN 199 AAEA+LAD +VSL AEVA AY+ LRDRQ R+ LA ES Q + LT +R +RG AS Sbjct: 171 GAAEANLADARVSLAAEVAQAYVALRDRQHRLELARESAEKQRAIYDLTAERRDRGAAST 230 Query: 200 LDLIRVRNQLDGTRSDQVPLQADLESYLNQLATLVGQEPGTLDEMLVANANAENAENAVP 259 LD+ R R Q++ + + +PL AD ++Y N LATL G+ PG LD++L A A Sbjct: 231 LDVERQRGQVEQSNAAVLPLGADYDAYRNALATLTGEVPGALDDLLAAPAAVPLPP---- 286 Query: 260 LPPAQVAAGDPQALLRRRPDIRAAERTLAADTAKIGQAEAARYPSLKLFGVIGLGGTHPS 319 A+VA GDP ALL+RRPD+RAAER LAA TAKIG A+AA +P L G+IGLGGT Sbjct: 287 ---AEVAVGDPAALLQRRPDVRAAERKLAASTAKIGVAKAAAFPRLSFLGLIGLGGTSIG 343 Query: 320 DLTKLDDFTAVAAPMLSWNFLDFGRAKARVTQAERVRDEAEIKYRQSVLEALRDAEDSLS 379 D+ D AVA P LSWNFLDFGR ARV QAE RDEA +YR +VL ALRDAED+LS Sbjct: 344 DVVDPDKLAAVAVPQLSWNFLDFGRNAARVGQAEGARDEAAAQYRSAVLVALRDAEDALS 403 Query: 380 RFRYGRVTVATVARTKASADRALDLAQQRYRAGTGTLIDVLDTTRQQLSAQQNLSQAEAA 439 R+ R V T AR+KASAD + L +QR+ AGT T I++LD RQ+++A Q L QA+A Sbjct: 404 RYGARRQAVVTAARSKASADTSATLVRQRFDAGTATRIELLDAERQRIAADQALIQAKAQ 463 Query: 440 LTRSFVGIQKALGLGW 455 +T F+ ++KALGLGW Sbjct: 464 MTTDFIALEKALGLGW 479 >ref|YP_004555078.1| NodT family RND efflux system outer membrane lipoprotein [Sphingobium chlorophenolicum L-1] gb|AEG50572.1| RND efflux system, outer membrane lipoprotein, NodT family [Sphingobium chlorophenolicum L-1] Length = 476 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 241/430 (56%), Positives = 298/430 (69%), Gaps = 12/430 (2%) Query: 26 LGDPVLNDLVQRALDANPNLGIARAXALDANPNLGIARAALNLEQANALPSVGASALAGH 85 L DPVL+ L RAL ANP + A A + ARA+L E+ANALPS ASAL H Sbjct: 58 LNDPVLDTLETRALAANPGVAAAEA-------RMRQARASLRSERANALPSTNASALYVH 110 Query: 86 ARLPPINLGSSSGASTSSGSSTSLNLYSLGFDATWEADLFGGHRRAVQAANATAEAAEAS 145 A +P ++L S + S G S SLN Y+LGFDA+WEADL+GG RR V+AA A +AA+A Sbjct: 111 ATVPGLDLNDSGDSDQSGGGSESLNFYNLGFDASWEADLWGGKRRGVEAARAQLDAAQAD 170 Query: 146 LADVQVSLEAEVANAYINLRDRQRRIRLADESIRAQEQMATLTQQRLERGTASNLDLIRV 205 +AD QVSL AE+A AY++LRDRQ+RI LA +++ Q +M LT+QR +GTAS LD+ R Sbjct: 171 VADAQVSLTAEIAQAYVHLRDRQQRIALARDALARQREMLRLTEQRHAQGTASALDVERQ 230 Query: 206 RNQLDGTRSDQVPLQADLESYLNQLATLVGQEPGTLDEMLVANANAENAENAVPLPPAQV 265 R+ + + PL A+ + YLN LATL G+ PG LD ML A + A VPLPPAQV Sbjct: 231 RHLAEQADAALPPLAAERDGYLNALATLAGEAPGALDGMLAAPSKA-----IVPLPPAQV 285 Query: 266 AAGDPQALLRRRPDIRAAERTLAADTAKIGQAEAARYPSLKLFGVIGLGGTHPSDLTKLD 325 A GDP LL+RRPD+RAAER AA TAKIG AEAAR+PS+ G+IG+GGT P DL D Sbjct: 286 AVGDPAELLKRRPDVRAAERRFAAATAKIGVAEAARFPSISFMGLIGIGGTSPGDLVDFD 345 Query: 326 DFTAVAAPMLSWNFLDFGRAKARVTQAERVRDEAEIKYRQSVLEALRDAEDSLSRFRYGR 385 A+A P LSW+FLDFGR ARV QAE RDEA YRQ+VL+ALRD ED+LSRF GR Sbjct: 346 KLAAIAMPRLSWSFLDFGRNAARVGQAEGARDEAAAHYRQAVLDALRDGEDALSRFGNGR 405 Query: 386 VTVATVARTKASADRALDLAQQRYRAGTGTLIDVLDTTRQQLSAQQNLSQAEAALTRSFV 445 ++VA+ AR+KASADR L +QR+ AG T I +LD RQ LSA Q+LSQA AA+T ++ Sbjct: 406 LSVASAARSKASADRTAALTRQRFEAGAATRIQLLDAERQSLSAAQSLSQATAAMTADYI 465 Query: 446 GIQKALGLGW 455 +QKALGLGW Sbjct: 466 ALQKALGLGW 475