BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0291.p (275 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_524491.1| hypothetical protein Rfer_3251 [Rhodoferax ferr... 416 e-114 ref|ZP_06842157.1| extracellular solute-binding protein family 3... 412 e-113 ref|YP_001890386.1| hypothetical protein Bphyt_6720 [Burkholderi... 407 e-112 ref|YP_003775962.1| hypothetical protein Hsero_2555 [Herbaspiril... 405 e-111 ref|YP_557996.1| hypothetical protein Bxe_A3035 [Burkholderia xe... 404 e-111 >ref|YP_524491.1| hypothetical protein Rfer_3251 [Rhodoferax ferrireducens T118] gb|ABD70960.1| conserved hypothetical protein [Rhodoferax ferrireducens T118] Length = 264 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 196/257 (76%), Positives = 224/257 (87%), Gaps = 1/257 (0%) Query: 20 SLFMA-CSAGAVQAAGPDCSRPYTLALHDHGLLYSADTDTGIDKDFADELIRRSGCKVGV 78 SL +A C+ AAGPDCSRP TLALHDHGLLYSADTD GIDKDFADELIRRSGCK+ V Sbjct: 8 SLMLALCAIATSVAAGPDCSRPLTLALHDHGLLYSADTDAGIDKDFADELIRRSGCKIAV 67 Query: 79 SLMSRVRIWQLIESGALDFSLSGIASPERRRFASFAWYFSNKYYLLVRKDAGMRQLVEFE 138 SLMSR RIWQLIESGALDFSLSGI + ER RFA FAWYFSNKYYLLVR+D+G+RQL +FE Sbjct: 68 SLMSRARIWQLIESGALDFSLSGITNAERNRFAGFAWYFSNKYYLLVRRDSGVRQLADFE 127 Query: 139 RSETFRLGVIRSFRYSASANRLVDKLTAANRVTQAGGLDPLYQALMANRIQGMIMEPFDY 198 RS+ FRLGVIRSFRYS SANRLVDKLT ANRV+QA GL PLY+ L+ NRIQGMI+EPFDY Sbjct: 128 RSDPFRLGVIRSFRYSESANRLVDKLTLANRVSQANGLAPLYETLLLNRIQGMIIEPFDY 187 Query: 199 PVVEEKHIRDVTAIIEFNDPSIPHGLIMSNKALPPGERDKWRALVDEMRADGTVRRIFEK 258 P +++K IRD+T++IEF+DP++PHGLIMS KAL P E+DKWRALV++MRADGTVRRIFEK Sbjct: 188 PALDQKKIRDITSVIEFDDPAVPHGLIMSKKALSPAEQDKWRALVNDMRADGTVRRIFEK 247 Query: 259 YFPPALAASMLDFQAQP 275 YF P LAA+++ FQ P Sbjct: 248 YFDPGLAAALVAFQPPP 264 >ref|ZP_06842157.1| extracellular solute-binding protein family 3 [Burkholderia sp. Ch1-1] gb|EFG70109.1| extracellular solute-binding protein family 3 [Burkholderia sp. Ch1-1] Length = 264 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 195/262 (74%), Positives = 222/262 (84%) Query: 14 RILLTTSLFMACSAGAVQAAGPDCSRPYTLALHDHGLLYSADTDTGIDKDFADELIRRSG 73 R L L M C V AAGPDCSRP+TL LHDHGLLYS DTD+GIDKDFADELIRRSG Sbjct: 3 RNWLGGVLLMICCVSNVFAAGPDCSRPFTLGLHDHGLLYSLDTDSGIDKDFADELIRRSG 62 Query: 74 CKVGVSLMSRVRIWQLIESGALDFSLSGIASPERRRFASFAWYFSNKYYLLVRKDAGMRQ 133 C++ +SLMSR RIW+LIESGALDFSLSGIA+ ER ++ASFAWYFSNKYYLLVRKDAG+ Sbjct: 63 CQIKLSLMSRARIWKLIESGALDFSLSGIANDERNQYASFAWYFSNKYYLLVRKDAGIHD 122 Query: 134 LVEFERSETFRLGVIRSFRYSASANRLVDKLTAANRVTQAGGLDPLYQALMANRIQGMIM 193 + EFE+ + +LGVIRSFRYS SAN+LVDKLTA NR++QAGGL+PLYQAL+ IQGMI+ Sbjct: 123 VAEFEQDDHAQLGVIRSFRYSDSANQLVDKLTAENRISQAGGLEPLYQALILRHIQGMII 182 Query: 194 EPFDYPVVEEKHIRDVTAIIEFNDPSIPHGLIMSNKALPPGERDKWRALVDEMRADGTVR 253 EPFDYP +EEK IRDVT IIEFNDPS+PHGLIMS KALP ER KW+ALVDEMRADGTVR Sbjct: 183 EPFDYPALEEKKIRDVTTIIEFNDPSVPHGLIMSKKALPEAERKKWQALVDEMRADGTVR 242 Query: 254 RIFEKYFPPALAASMLDFQAQP 275 RIFEKYF P LA +M++F+A P Sbjct: 243 RIFEKYFRPELADAMVNFKASP 264 >ref|YP_001890386.1| hypothetical protein Bphyt_6720 [Burkholderia phytofirmans PsJN] gb|ACD21015.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN] Length = 264 Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust. Identities = 193/267 (72%), Positives = 222/267 (83%), Gaps = 3/267 (1%) Query: 9 IVRACRILLTTSLFMACSAGAVQAAGPDCSRPYTLALHDHGLLYSADTDTGIDKDFADEL 68 ++R C L L G AAGPDCSR +TLALHDHGLLYS DTDTGIDKDFADEL Sbjct: 1 MIRQC---LGGLLLALSCVGNAMAAGPDCSRSFTLALHDHGLLYSVDTDTGIDKDFADEL 57 Query: 69 IRRSGCKVGVSLMSRVRIWQLIESGALDFSLSGIASPERRRFASFAWYFSNKYYLLVRKD 128 IRRSGC++ VSLMSR RIW+LIESG LDFSLSGI + ER +A FAWYFSNKYYLLVRKD Sbjct: 58 IRRSGCQIRVSLMSRARIWKLIESGGLDFSLSGITNDERNEYADFAWYFSNKYYLLVRKD 117 Query: 129 AGMRQLVEFERSETFRLGVIRSFRYSASANRLVDKLTAANRVTQAGGLDPLYQALMANRI 188 AG+ +L +FE ++ F+LGVIRSFRYS SANRLVDKL+A NRV+QAGGL+PLYQAL+ RI Sbjct: 118 AGIHRLADFEHNDRFQLGVIRSFRYSDSANRLVDKLSAENRVSQAGGLEPLYQALILRRI 177 Query: 189 QGMIMEPFDYPVVEEKHIRDVTAIIEFNDPSIPHGLIMSNKALPPGERDKWRALVDEMRA 248 QGMI+EPFDYP ++EK IRDVT I+EF+DP++ HGLIMS KAL P ER+KWRALV+EMRA Sbjct: 178 QGMIIEPFDYPAIDEKKIRDVTTIVEFDDPAVRHGLIMSKKALSPAEREKWRALVNEMRA 237 Query: 249 DGTVRRIFEKYFPPALAASMLDFQAQP 275 DGTVRRIFEKYF P LA SM+DF+ QP Sbjct: 238 DGTVRRIFEKYFKPDLADSMVDFKTQP 264 >ref|YP_003775962.1| hypothetical protein Hsero_2555 [Herbaspirillum seropedicae SmR1] gb|ADJ64054.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 285 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 191/242 (78%), Positives = 214/242 (88%) Query: 34 GPDCSRPYTLALHDHGLLYSADTDTGIDKDFADELIRRSGCKVGVSLMSRVRIWQLIESG 93 GPDCSRPYTLALHDHGLLYS+ TDTGIDKDFADELIRRSGCKV VSLMSR RIWQLIESG Sbjct: 44 GPDCSRPYTLALHDHGLLYSSATDTGIDKDFADELIRRSGCKVNVSLMSRARIWQLIESG 103 Query: 94 ALDFSLSGIASPERRRFASFAWYFSNKYYLLVRKDAGMRQLVEFERSETFRLGVIRSFRY 153 ALDFSLSGI + +R +FASFAWYFSNKYYLLVRKDAG+ QL + R+E F LGVIR FRY Sbjct: 104 ALDFSLSGITNAQRDQFASFAWYFSNKYYLLVRKDAGVMQLADVTRNERFHLGVIRGFRY 163 Query: 154 SASANRLVDKLTAANRVTQAGGLDPLYQALMANRIQGMIMEPFDYPVVEEKHIRDVTAII 213 SA+ANR+VD+LTA+NRV+QAGGL+PLY AL+ +RIQGMIMEPFDYPVV+EK IRD T II Sbjct: 164 SANANRMVDQLTASNRVSQAGGLEPLYDALLLDRIQGMIMEPFDYPVVQEKRIRDATTII 223 Query: 214 EFNDPSIPHGLIMSNKALPPGERDKWRALVDEMRADGTVRRIFEKYFPPALAASMLDFQA 273 F+DPS+PHGLIMS KAL P E+DKWRALVD MRADGTV RIF+KYF LAASM+ FQ+ Sbjct: 224 SFDDPSVPHGLIMSRKALSPAEQDKWRALVDGMRADGTVLRIFQKYFNAELAASMVQFQS 283 Query: 274 QP 275 +P Sbjct: 284 KP 285 >ref|YP_557996.1| hypothetical protein Bxe_A3035 [Burkholderia xenovorans LB400] gb|ABE29944.1| amino acid ABC transporter substrate-binding protein, PAAT family [Burkholderia xenovorans LB400] Length = 264 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 191/262 (72%), Positives = 220/262 (83%) Query: 14 RILLTTSLFMACSAGAVQAAGPDCSRPYTLALHDHGLLYSADTDTGIDKDFADELIRRSG 73 R L L C V AAGPDCSRP+TL LHDHGLLYS DTD+GIDKDFADELIRRSG Sbjct: 3 RNWLGGVLLATCCVSNVFAAGPDCSRPFTLGLHDHGLLYSLDTDSGIDKDFADELIRRSG 62 Query: 74 CKVGVSLMSRVRIWQLIESGALDFSLSGIASPERRRFASFAWYFSNKYYLLVRKDAGMRQ 133 C++ +SLMSR RIW+LIESGALDFSLSGIA+ ER ++ASFAWYFS+KYYLLVRKDAG+ Sbjct: 63 CQIKLSLMSRARIWKLIESGALDFSLSGIANDERNQYASFAWYFSDKYYLLVRKDAGIHD 122 Query: 134 LVEFERSETFRLGVIRSFRYSASANRLVDKLTAANRVTQAGGLDPLYQALMANRIQGMIM 193 + EFE+ + +LGVIRSFRYS SAN+LVDKLTA NR++QAGGL+PLYQAL+ IQGMI+ Sbjct: 123 VAEFEQDDHAQLGVIRSFRYSDSANQLVDKLTAENRISQAGGLEPLYQALILRHIQGMIV 182 Query: 194 EPFDYPVVEEKHIRDVTAIIEFNDPSIPHGLIMSNKALPPGERDKWRALVDEMRADGTVR 253 EPFDYP +EEK IR+ T IIEFNDPS+PHGLIMS KALP ER KW+ALVDEMRADGTVR Sbjct: 183 EPFDYPALEEKKIREATTIIEFNDPSVPHGLIMSKKALPEAERKKWQALVDEMRADGTVR 242 Query: 254 RIFEKYFPPALAASMLDFQAQP 275 RIFEKYF P LA +M++F+A P Sbjct: 243 RIFEKYFRPELADAMVNFKASP 264