BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0277.p         (156 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08868259.1| transcriptional regulator, AraC family [Azosp...   149   2e-34
ref|ZP_08840509.1| hypothetical protein HMPREF0178_03283 [Biloph...   126   1e-27
ref|ZP_07945831.1| AraC family Bacterial regulatory helix-turn-h...   124   4e-27
ref|YP_003334010.1| AraC family transcriptional regulator [Dicke...   122   1e-26
ref|YP_003882602.1| transcriptional regulator [Dickeya dadantii ...   116   1e-24

>ref|ZP_08868259.1| transcriptional regulator, AraC family [Azospirillum amazonense Y2]
 gb|EGY02148.1| transcriptional regulator, AraC family [Azospirillum amazonense Y2]
          Length = 257

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/155 (53%), Positives = 109/155 (70%), Gaps = 4/155 (2%)

Query: 1   VRRLVEFIDLSIDLSRTGPAGLVLPESVVRHCTPLLLEALTAMPQR-HSRLHGLLLRIDA 59
           VRRL++FI L+   +  G   L   + + RH TPLLL+ L A P R  SRLH LL R++A
Sbjct: 106 VRRLLDFITLTAGNADGGGRNL---DGLARHWTPLLLDTLMAEPARPASRLHALLARLEA 162

Query: 60  APGQVWTAARMARVANLSASRLHALFKSELGRTPQEWLSDVRLRFVQDALAGSDTPLAEL 119
           AP + WT   MAR A LSASRLHALF+ EL +TPQ +++ +RL  V D LA +  P+A++
Sbjct: 163 APERPWTVEVMARTAGLSASRLHALFREELDQTPQAYVASLRLARVMDQLASTTLPIAQI 222

Query: 120 ALRAGYSDQSALTRAMRRTTGMTPAAYRREHRREH 154
           A ++GY+DQSALTRA+RR  G+TPAAYRR+H RE 
Sbjct: 223 AYQSGYADQSALTRALRRAVGLTPAAYRRQHGREQ 257


>ref|ZP_08840509.1| hypothetical protein HMPREF0178_03283 [Bilophila sp. 4_1_30]
 gb|EGW43861.1| hypothetical protein HMPREF0178_03283 [Bilophila sp. 4_1_30]
          Length = 256

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/158 (49%), Positives = 97/158 (61%), Gaps = 11/158 (6%)

Query: 1   VRRLVEFIDLSID-LSRTGPAGLVLPESVVRHCTPLLLEALTAMP-QRHSRLHGLLLRID 58
            R L+ F +LS D  S+ G           +   PLLL +    P  R SRL  L   ID
Sbjct: 97  TRHLIGFAELSRDRFSQPG---------TTQCWMPLLLNSFLERPVCRPSRLAALERLID 147

Query: 59  AAPGQVWTAARMARVANLSASRLHALFKSELGRTPQEWLSDVRLRFVQDALAGSDTPLAE 118
           A PG  WT   MAR   +S SRLHAL +SE G +PQ WL++ R+  V+  LA SD P+A+
Sbjct: 148 AHPGAPWTVGEMARRIGISPSRLHALSRSEWGLSPQAWLAERRISHVRKWLAESDLPIAD 207

Query: 119 LALRAGYSDQSALTRAMRRTTGMTPAAYRREHRREHRQ 156
           LALRAGY+DQSALTRAM+R TG+TPAAYRR+ R E + 
Sbjct: 208 LALRAGYADQSALTRAMQRLTGLTPAAYRRQTRLEQKN 245


>ref|ZP_07945831.1| AraC family Bacterial regulatory helix-turn-helix protein
           [Bilophila wadsworthia 3_1_6]
 gb|EFV42983.1| AraC family Bacterial regulatory helix-turn-helix protein
           [Bilophila wadsworthia 3_1_6]
          Length = 256

 Score =  124 bits (312), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/158 (49%), Positives = 97/158 (61%), Gaps = 11/158 (6%)

Query: 1   VRRLVEFIDLSID-LSRTGPAGLVLPESVVRHCTPLLLEALTAMP-QRHSRLHGLLLRID 58
            R L+ F +LS D  S+ G           +   PLLL +    P  R SRL  L   ID
Sbjct: 97  TRHLIGFAELSRDRFSQPG---------TTQCWMPLLLNSFLERPVCRPSRLAVLERLID 147

Query: 59  AAPGQVWTAARMARVANLSASRLHALFKSELGRTPQEWLSDVRLRFVQDALAGSDTPLAE 118
           A PG  WT   MAR   +S SRLHAL +SE G +PQ WL++ R+  V+  LA SD P+A+
Sbjct: 148 AHPGAPWTVGEMARRIGISPSRLHALSRSEWGLSPQAWLAERRIGHVRKWLAESDLPIAD 207

Query: 119 LALRAGYSDQSALTRAMRRTTGMTPAAYRREHRREHRQ 156
           LALRAGY+DQSALTRAM+R TG+TPAAYRR+ R E + 
Sbjct: 208 LALRAGYADQSALTRAMQRLTGLTPAAYRRQTRLEQKN 245


>ref|YP_003334010.1| AraC family transcriptional regulator [Dickeya dadantii Ech586]
 gb|ACZ77305.1| transcriptional regulator, AraC family [Dickeya dadantii Ech586]
          Length = 254

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/128 (52%), Positives = 90/128 (70%), Gaps = 3/128 (2%)

Query: 24  LPESVVRHCTPLLLEALTA--MPQRHSRLHGLLLRIDAAPGQVWTAARMARVANLSASRL 81
           +P S ++  TPLLL+ALT   +P R SRL GL+  ID+ P   WT   MA+   +S SRL
Sbjct: 117 VPISRIQLWTPLLLDALTGQGLPPR-SRLAGLISAIDSDPFLDWTIEFMAQQVGMSVSRL 175

Query: 82  HALFKSELGRTPQEWLSDVRLRFVQDALAGSDTPLAELALRAGYSDQSALTRAMRRTTGM 141
           HA+F++EL  TP  WL+ VRL  VQ  LA ++ P+AE+A R GY+DQSALTRAMR+ TG+
Sbjct: 176 HAVFRNELDNTPHAWLAHVRLGRVQHWLATTNLPIAEIAYRGGYADQSALTRAMRKATGL 235

Query: 142 TPAAYRRE 149
           TPA +R++
Sbjct: 236 TPAVFRQQ 243


>ref|YP_003882602.1| transcriptional regulator [Dickeya dadantii 3937]
 gb|ADM98045.1| Transcriptional regulator [Dickeya dadantii 3937]
          Length = 254

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 86/126 (68%), Gaps = 1/126 (0%)

Query: 24  LPESVVRHCTPLLLEALTAM-PQRHSRLHGLLLRIDAAPGQVWTAARMARVANLSASRLH 82
           +P+S ++   PLLL+ALT   PQ  SRL GL+  ID+ P   WT   MA+ A +S SRLH
Sbjct: 117 VPDSRIQLWAPLLLDALTGEGPQPRSRLAGLISAIDSDPFLDWTTEFMAQQAGMSVSRLH 176

Query: 83  ALFKSELGRTPQEWLSDVRLRFVQDALAGSDTPLAELALRAGYSDQSALTRAMRRTTGMT 142
           A+F+ E   TP  WL+ VRL  VQ  LA ++  +AE+A R  Y+DQSALTRAMR+ TG+T
Sbjct: 177 AVFRRERDTTPHAWLARVRLGRVQHWLATTNVSIAEIAYRGRYADQSALTRAMRKATGLT 236

Query: 143 PAAYRR 148
           PAA+R+
Sbjct: 237 PAAFRQ 242