BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0276.p (314 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001971955.1| putative transmembrane protein [Stenotrophom... 389 e-106 ref|YP_002028135.1| hypothetical protein Smal_1748 [Stenotrophom... 389 e-106 ref|YP_004792357.1| hypothetical protein BurJV3_1806 [Burkholder... 387 e-105 ref|ZP_05133816.1| integral membrane protein [Stenotrophomonas s... 385 e-105 ref|ZP_08182282.1| hypothetical protein XGA_1230 [Xanthomonas ga... 355 4e-96 >ref|YP_001971955.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a] emb|CAQ45654.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a] Length = 316 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 199/307 (64%), Positives = 245/307 (79%), Gaps = 1/307 (0%) Query: 1 MKSNIL-VGVGNGVAAGAFWGLVFLAPQVLGSFSALQLSAARYLAYGVVAVLLLAPRWRT 59 M++N + +G+ NGVAAGA WG+VFLAP VL SF+ALQLSA RYL YG++AV+LL PRW+ Sbjct: 1 MRNNPMALGIANGVAAGALWGVVFLAPAVLQSFNALQLSAGRYLVYGLIAVVLLLPRWKR 60 Query: 60 LSGRLGRAEWLALAYLSLLGNILYYLFLASAVQWAGGASTSLIIGLLPVVVTLVGARDEG 119 L+ +LGR EW+ L +LSL GN++Y+L LA+AVQWAGGA+ SLI+GL+PVVVTLVG R++G Sbjct: 61 LAPQLGRTEWIGLLWLSLAGNLVYFLLLATAVQWAGGAAASLIVGLIPVVVTLVGVREQG 120 Query: 120 ALKLSSLMAPLALCLLGVGLVGVQALSAEHATTDLATRAAGLLCAFGALASWSVYSVRNS 179 A+ L L+ L LC+LGV LVG +AL +EH T R GLLCAFGAL SW++YS+ NS Sbjct: 121 AVPLKQLLPALGLCVLGVALVGWEALMSEHLATPWRQRLIGLLCAFGALFSWALYSIGNS 180 Query: 180 RWLSRRPDISSHDWSLLTGVVTGALALLLVVPAFTQGMDGHGGSDWLRFWAVAAAVAIFA 239 RWL+RRPD+SSH+WSLLTGV TG LALLLV AF GH + W FWA++A VA+ A Sbjct: 181 RWLARRPDLSSHNWSLLTGVTTGGLALLLVPMAFIGHTSGHTAAQWSGFWAISAGVAVVA 240 Query: 240 SVVGNAFWNRASRLLPLTLTGQMIIFETLFALLYGFLWEQRWPTRLEVLAIVCLVSGVVW 299 S++GNAFWNRASRLLPLTLTGQMI+FETLFAL Y F W+QRWP+ LE LAIV LV+GV+ Sbjct: 241 SILGNAFWNRASRLLPLTLTGQMIVFETLFALAYAFAWQQRWPSLLEALAIVFLVAGVML 300 Query: 300 CASLHRS 306 CA HRS Sbjct: 301 CAHAHRS 307 >ref|YP_002028135.1| hypothetical protein Smal_1748 [Stenotrophomonas maltophilia R551-3] gb|ACF51452.1| protein of unknown function DUF6 transmembrane [Stenotrophomonas maltophilia R551-3] Length = 316 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 200/307 (65%), Positives = 245/307 (79%), Gaps = 1/307 (0%) Query: 1 MKSNIL-VGVGNGVAAGAFWGLVFLAPQVLGSFSALQLSAARYLAYGVVAVLLLAPRWRT 59 M++N + +G+ NGVAAGA WG+VFLAP VL SF+ALQLSA RYL YG++AV+LL PRW+ Sbjct: 1 MRNNPMALGIANGVAAGAVWGVVFLAPAVLQSFNALQLSAGRYLVYGLIAVVLLLPRWKR 60 Query: 60 LSGRLGRAEWLALAYLSLLGNILYYLFLASAVQWAGGASTSLIIGLLPVVVTLVGARDEG 119 L+ RLGRAEW+ L +LSL GN++Y+L LA+AVQWAGGA+ SLI+GL+PVVVTLVG R++G Sbjct: 61 LAPRLGRAEWIGLLWLSLAGNLVYFLLLATAVQWAGGAAASLIVGLIPVVVTLVGVREQG 120 Query: 120 ALKLSSLMAPLALCLLGVGLVGVQALSAEHATTDLATRAAGLLCAFGALASWSVYSVRNS 179 A+ L L+ L LC+LGV LVG +AL +EH T R GLLCAFGAL SW++YS+ NS Sbjct: 121 AVPLKQLLPALGLCVLGVALVGWEALMSEHLATPWRQRLIGLLCAFGALFSWALYSIGNS 180 Query: 180 RWLSRRPDISSHDWSLLTGVVTGALALLLVVPAFTQGMDGHGGSDWLRFWAVAAAVAIFA 239 RWL+RR D+SSHDWSLLTGV TG LALLLV AF H + W FWA++A VA+ A Sbjct: 181 RWLARRSDLSSHDWSLLTGVTTGGLALLLVPMAFIGHTGSHTSAQWSGFWAISAGVAVVA 240 Query: 240 SVVGNAFWNRASRLLPLTLTGQMIIFETLFALLYGFLWEQRWPTRLEVLAIVCLVSGVVW 299 S++GNAFWNRASRLLPLTLTGQMI+FETLFALLY F W+QRWP+ LE LAIV LV+GV+ Sbjct: 241 SILGNAFWNRASRLLPLTLTGQMIVFETLFALLYAFAWQQRWPSLLEALAIVFLVAGVML 300 Query: 300 CASLHRS 306 CA HR+ Sbjct: 301 CAHAHRT 307 >ref|YP_004792357.1| hypothetical protein BurJV3_1806 [Burkholderia sp. JV3] gb|AEM51131.1| protein of unknown function DUF6 transmembrane [Burkholderia sp. JV3] Length = 316 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/307 (65%), Positives = 244/307 (79%), Gaps = 1/307 (0%) Query: 1 MKSNIL-VGVGNGVAAGAFWGLVFLAPQVLGSFSALQLSAARYLAYGVVAVLLLAPRWRT 59 M++N + +G+ NGVAAGA WG+VFLAP VL SF+ALQLSA RYL YG++AV LL PRW+ Sbjct: 1 MRNNPMALGIANGVAAGALWGVVFLAPAVLQSFNALQLSAGRYLVYGLIAVALLLPRWKR 60 Query: 60 LSGRLGRAEWLALAYLSLLGNILYYLFLASAVQWAGGASTSLIIGLLPVVVTLVGARDEG 119 L+ RLGRAEW L +LSL GN++Y+L LA+AVQWAGGA+ SLI+GL+PVVVTLVG R++G Sbjct: 61 LAPRLGRAEWFGLLWLSLAGNLVYFLLLATAVQWAGGAAASLIVGLIPVVVTLVGVREQG 120 Query: 120 ALKLSSLMAPLALCLLGVGLVGVQALSAEHATTDLATRAAGLLCAFGALASWSVYSVRNS 179 A+ L L+ L LC+LGV LVG +AL +EH T R GLLCAFGAL SW++YS+ NS Sbjct: 121 AVPLKQLLPALGLCVLGVALVGWEALMSEHLATPWRQRLIGLLCAFGALFSWALYSIGNS 180 Query: 180 RWLSRRPDISSHDWSLLTGVVTGALALLLVVPAFTQGMDGHGGSDWLRFWAVAAAVAIFA 239 RWL+RRPD+SSHDWSLLTGV TG LALLLV AF H + W FWA++A VA+ A Sbjct: 181 RWLARRPDLSSHDWSLLTGVTTGGLALLLVPMAFIGHSGTHTAAQWGGFWAISAGVAVVA 240 Query: 240 SVVGNAFWNRASRLLPLTLTGQMIIFETLFALLYGFLWEQRWPTRLEVLAIVCLVSGVVW 299 S++GNAFWNRASRLLPLTLTGQMI+FETLFALLY F W++RWP+ LE LAIV LV+GV+ Sbjct: 241 SILGNAFWNRASRLLPLTLTGQMIVFETLFALLYAFAWQRRWPSLLEALAIVFLVAGVML 300 Query: 300 CASLHRS 306 CA HR+ Sbjct: 301 CAHAHRT 307 >ref|ZP_05133816.1| integral membrane protein [Stenotrophomonas sp. SKA14] gb|EED37877.1| integral membrane protein [Stenotrophomonas sp. SKA14] Length = 316 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/307 (65%), Positives = 243/307 (79%), Gaps = 1/307 (0%) Query: 1 MKSNIL-VGVGNGVAAGAFWGLVFLAPQVLGSFSALQLSAARYLAYGVVAVLLLAPRWRT 59 M++N + +G+ NGVAAGA WG+VFLAP VL SF+ALQLSA RYL YG++AV LL PRW+ Sbjct: 1 MRNNPMALGIANGVAAGALWGVVFLAPAVLQSFNALQLSAGRYLVYGLIAVALLLPRWKR 60 Query: 60 LSGRLGRAEWLALAYLSLLGNILYYLFLASAVQWAGGASTSLIIGLLPVVVTLVGARDEG 119 L+ +LGRAEW L +LSL GN++Y+L LA+AVQWAGGA+ SLI+GL+PVVVTLVG R++G Sbjct: 61 LAPQLGRAEWTGLLWLSLAGNLVYFLLLATAVQWAGGAAASLIVGLIPVVVTLVGVREKG 120 Query: 120 ALKLSSLMAPLALCLLGVGLVGVQALSAEHATTDLATRAAGLLCAFGALASWSVYSVRNS 179 A+ L L+ L LC+LGV LVG +AL +EH T R GLLCAFGAL SW++YS+ NS Sbjct: 121 AVPLKQLLPALGLCVLGVALVGWEALMSEHLATPWRQRLIGLLCAFGALFSWALYSIGNS 180 Query: 180 RWLSRRPDISSHDWSLLTGVVTGALALLLVVPAFTQGMDGHGGSDWLRFWAVAAAVAIFA 239 RWL+RRPD+SSHDWSLLTGV TG LALLLV AF H + W FWA++A VA+ A Sbjct: 181 RWLARRPDLSSHDWSLLTGVTTGGLALLLVPMAFIGHTGSHTPAQWGGFWAISAGVAVIA 240 Query: 240 SVVGNAFWNRASRLLPLTLTGQMIIFETLFALLYGFLWEQRWPTRLEVLAIVCLVSGVVW 299 S++GNAFWNRASRLLPLTLTGQMI+FETLFALLY F W+ RWPT LE LAIV LV+GV+ Sbjct: 241 SILGNAFWNRASRLLPLTLTGQMIVFETLFALLYAFAWQGRWPTLLEALAIVFLVAGVML 300 Query: 300 CASLHRS 306 CA HR+ Sbjct: 301 CAHAHRA 307 >ref|ZP_08182282.1| hypothetical protein XGA_1230 [Xanthomonas gardneri ATCC 19865] gb|EGD20084.1| hypothetical protein XGA_1230 [Xanthomonas gardneri ATCC 19865] Length = 309 Score = 355 bits (912), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 192/307 (62%), Positives = 234/307 (76%), Gaps = 5/307 (1%) Query: 1 MKSNILVGVGNGVAAGAFWGLVFLAPQVLGSFSALQLSAARYLAYGVVAVLLLAPRWRTL 60 M+ ++VGV G+ AGA WGLVFLAPQ+L +F+ LQL+ ARYL+YG VA L+LAPR R Sbjct: 1 MRERLMVGVACGIGAGALWGLVFLAPQLLAAFTPLQLAVARYLSYGAVAALVLAPRARQT 60 Query: 61 SGRLGRAEWLALAYLSLLGNILYYLFLASAVQWAGGASTSLIIGLLPVVVTLVGARDEGA 120 + R+GRAEW AL LSLLGN++YY+ L SAVQWAG A+T+LIIGLLPVVVT++G R GA Sbjct: 61 AARMGRAEWWALVRLSLLGNLIYYVLLGSAVQWAGSAATALIIGLLPVVVTVIGTRAAGA 120 Query: 121 LKLSSLMAPLALCLLGVGLVGVQAL---SAEHATTDLATRAAGLLCAFGALASWSVYSVR 177 ++L L AP LC++GV LV + L S +HA +D ATR AGLLCAFGALASWS YS+ Sbjct: 121 VQLRRLAAPCLLCVIGVALVALDTLQHDSGQHA-SDRATRIAGLLCAFGALASWSAYSIV 179 Query: 178 NSRWLSRRPDISSHDWSLLTGVVTGALALLLVVPAFTQGMDGHGGSDWLRFWAVAAAVAI 237 N+RWL RRPD+S DWSLLTGVVTGALAL+L A G H +W FW ++ + I Sbjct: 180 NARWLRRRPDLSGGDWSLLTGVVTGALALVLAPAALI-GSATHAPIEWASFWGISLLLGI 238 Query: 238 FASVVGNAFWNRASRLLPLTLTGQMIIFETLFALLYGFLWEQRWPTRLEVLAIVCLVSGV 297 ASV+GNA WNRASR+LPLTL GQMI+FET+FALLYGF WE R PT LE+ AI CL+ GV Sbjct: 239 LASVIGNALWNRASRVLPLTLVGQMIVFETIFALLYGFAWEMRLPTPLELAAIACLLVGV 298 Query: 298 VWCASLH 304 +WCA+LH Sbjct: 299 LWCAALH 305