BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0268.p         (128 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003605024.1| multi-sensor hybrid histidine kinase [Burkho...   121   3e-26
ref|ZP_02883538.1| PAS/PAC sensor hybrid histidine kinase [Burkh...   120   8e-26
ref|YP_001895502.1| PAS/PAC sensor hybrid histidine kinase [Burk...   118   4e-25
ref|ZP_03269447.1| PAS/PAC sensor hybrid histidine kinase [Burkh...   115   2e-24
ref|ZP_06840642.1| multi-sensor hybrid histidine kinase [Burkhol...   115   2e-24

>ref|YP_003605024.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gb|ADG15513.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 657

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 85/120 (70%)

Query: 8   ILIIEDDEGLRMLARRRLEKRGFKVGSAGSIAQARSLLRDGAFDLLVIDYQLDENMSGLD 67
           +L+++DDEG+  LAR+ LE+ G +V   G +  AR  L +G  DLLV+DYQL+   +GLD
Sbjct: 13  VLVVDDDEGILRLARKSLERAGCRVAICGGVEAARERLANGGLDLLVLDYQLNGPETGLD 72

Query: 68  FYNELCEEGVRIPAVMCSGFSDDVHFGEALRCGIAYVLPKSQDYLDELPDVVQQVLDRPR 127
           F+  L  EGVRIPA++ +GF+D+    EALR G++ V+PKS DYLD LP+ V++VL + R
Sbjct: 73  FFRRLRAEGVRIPAILVTGFTDESRVIEALRAGVSDVVPKSGDYLDYLPEAVERVLSQVR 132


>ref|ZP_02883538.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis
           C4D1M]
 gb|EDT10970.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis
           C4D1M]
          Length = 657

 Score =  120 bits (300), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 61/127 (48%), Positives = 88/127 (69%), Gaps = 2/127 (1%)

Query: 3   ASEPA--ILIIEDDEGLRMLARRRLEKRGFKVGSAGSIAQARSLLRDGAFDLLVIDYQLD 60
           +++PA  +L+++DDEG+  LAR+ LE+ G +V    S+  AR  L  G  DLLV+DYQL 
Sbjct: 6   STQPAACVLVVDDDEGILRLARKSLERAGCRVAVCPSVEAARERLAAGGLDLLVLDYQLS 65

Query: 61  ENMSGLDFYNELCEEGVRIPAVMCSGFSDDVHFGEALRCGIAYVLPKSQDYLDELPDVVQ 120
              +GLDF+  L  EGVRIPA++ +GF+D+    EALR G++ V+PKS DYLD LP+ V+
Sbjct: 66  GPETGLDFFRRLRSEGVRIPAILVTGFTDESRVIEALRAGVSDVVPKSGDYLDYLPEAVE 125

Query: 121 QVLDRPR 127
           +VL + R
Sbjct: 126 RVLSQVR 132


>ref|YP_001895502.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
 gb|ACD16278.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
          Length = 657

 Score =  118 bits (295), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/127 (47%), Positives = 88/127 (69%), Gaps = 2/127 (1%)

Query: 3   ASEPA--ILIIEDDEGLRMLARRRLEKRGFKVGSAGSIAQARSLLRDGAFDLLVIDYQLD 60
           +++PA  +L+++DDEG+  LAR+ LE+ G +V     +  AR  L  G  DLLV+DYQL+
Sbjct: 6   STQPAAYVLVVDDDEGILRLARKSLERAGCRVAICAGVEAARERLAGGGPDLLVLDYQLN 65

Query: 61  ENMSGLDFYNELCEEGVRIPAVMCSGFSDDVHFGEALRCGIAYVLPKSQDYLDELPDVVQ 120
              +GLDF+  L  EGVRIPA++ +GF+D+    EALR G++ V+PKS DYLD LP+ V+
Sbjct: 66  GPETGLDFFRRLRAEGVRIPAILVTGFTDESRVIEALRAGVSDVVPKSGDYLDYLPEAVE 125

Query: 121 QVLDRPR 127
           +VL + R
Sbjct: 126 RVLSQVR 132


>ref|ZP_03269447.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160]
 gb|EDZ98964.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160]
          Length = 657

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 82/120 (68%)

Query: 8   ILIIEDDEGLRMLARRRLEKRGFKVGSAGSIAQARSLLRDGAFDLLVIDYQLDENMSGLD 67
           +L+++DDEG+  LAR+ LE+ G +V     +  AR  L  G  DLLV+DYQL    +GLD
Sbjct: 13  VLVVDDDEGILRLARKSLERAGCRVAICAGVEAARERLASGGPDLLVLDYQLSGPETGLD 72

Query: 68  FYNELCEEGVRIPAVMCSGFSDDVHFGEALRCGIAYVLPKSQDYLDELPDVVQQVLDRPR 127
           F+  L  EGVRIPA++ +GF+D+    EALR G++ V+PKS DYLD LP+ V++VL + R
Sbjct: 73  FFRRLRAEGVRIPAILVTGFTDESRVIEALRSGVSDVVPKSGDYLDYLPEAVERVLSQVR 132


>ref|ZP_06840642.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gb|EFG71838.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 656

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 82/120 (68%)

Query: 8   ILIIEDDEGLRMLARRRLEKRGFKVGSAGSIAQARSLLRDGAFDLLVIDYQLDENMSGLD 67
           +L+++DDEG+  LAR+ LE+ G +V     +  AR  L  G  DLLV+DYQL    +GLD
Sbjct: 13  VLVVDDDEGILRLARKSLERAGCRVAICAGVDAARERLAGGGPDLLVLDYQLSGPETGLD 72

Query: 68  FYNELCEEGVRIPAVMCSGFSDDVHFGEALRCGIAYVLPKSQDYLDELPDVVQQVLDRPR 127
           F+  L  EGVRIPA++ +GF+D+    EALR G++ V+PKS DYLD LP+ V++VL + R
Sbjct: 73  FFRHLRAEGVRIPAILVTGFTDESRVIEALRAGVSDVVPKSGDYLDYLPEAVERVLSQVR 132