BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0265.p (183 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_03571608.1| conserved hypothetical protein [Burkholderia ... 179 2e-43 ref|YP_001585352.1| hypothetical protein Bmul_5390 [Burkholderia... 176 1e-42 ref|ZP_04948939.1| hypothetical protein BDAG_04969 [Burkholderia... 175 3e-42 ref|ZP_03588699.1| conserved hypothetical protein [Burkholderia ... 174 5e-42 ref|YP_003774536.1| signal peptide protein [Herbaspirillum serop... 171 6e-41 >ref|ZP_03571608.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] ref|ZP_03580799.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gb|EEE04729.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gb|EEE13416.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] Length = 303 Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 91/178 (51%), Positives = 116/178 (65%), Gaps = 4/178 (2%) Query: 8 QLTQSLRAVVTATLAATLLAVSLAVCASAIAAEPSGGAALQEKYQALQPQLTSNQFARPL 67 +L++ LR V A LAA L + +SA++ G AAL E+Y++L QL +N F RPL Sbjct: 2 ELSERLRPVRFAGLAARALVALCCIASSALSFGADGAAALLERYRSLGDQLKNNPFHRPL 61 Query: 68 YINSTESSSSIKGDIYAVVDYPFAQVRSSLT----MPAHWCDVLILHLNTKYCRPGPGQN 123 Y+ S+E++S++KGDIYAVVDYPF V L PA+WC VLILHLNTKYC G N Sbjct: 62 YLESSEAASTLKGDIYAVVDYPFQVVNGKLNDPAQGPANWCAVLILHLNTKYCHASSGGN 121 Query: 124 PATLSMRVGKKHEQAIGDAYRIDFNYRVPANGDDYFDVRLAADKGPIDTRDYRIQLEA 181 A L + +G+K EQ + D YR+ F YRV A DYF V L AD GP+ T+DYRI LEA Sbjct: 122 GAVLDVNIGRKTEQKLSDTYRLQFRYRVAAATPDYFQVDLTADSGPMSTKDYRIALEA 179 >ref|YP_001585352.1| hypothetical protein Bmul_5390 [Burkholderia multivorans ATCC 17616] ref|YP_001941897.1| NAD/FAD-utilizing enzyme [Burkholderia multivorans ATCC 17616] gb|ABX19060.1| conserved hypothetical protein [Burkholderia multivorans ATCC 17616] dbj|BAG47907.1| NAD/FAD-utilizing enzyme [Burkholderia multivorans ATCC 17616] Length = 303 Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 90/178 (50%), Positives = 114/178 (64%), Gaps = 4/178 (2%) Query: 8 QLTQSLRAVVTATLAATLLAVSLAVCASAIAAEPSGGAALQEKYQALQPQLTSNQFARPL 67 +L++ LR + A LAA L + SA++ G AAL E+Y +L QL +N F RPL Sbjct: 2 ELSERLRPMRFAGLAARALVALCCIAWSALSFGADGAAALLERYHSLGDQLKNNPFHRPL 61 Query: 68 YINSTESSSSIKGDIYAVVDYPFAQVRSSLT----MPAHWCDVLILHLNTKYCRPGPGQN 123 Y+ S+E++S++KGDIYAVVDYPF V L PA+WC VLILHLNTKYC G N Sbjct: 62 YLESSEAASTLKGDIYAVVDYPFQVVNGKLNDPAQGPANWCAVLILHLNTKYCHASSGGN 121 Query: 124 PATLSMRVGKKHEQAIGDAYRIDFNYRVPANGDDYFDVRLAADKGPIDTRDYRIQLEA 181 A L + +G+K EQ + D YR+ F YRV A DYF V L AD GP+ T+DYRI LEA Sbjct: 122 GAVLDVNIGRKTEQKLSDTYRLQFRYRVAAATPDYFQVDLTADSGPMSTKDYRIALEA 179 >ref|ZP_04948939.1| hypothetical protein BDAG_04969 [Burkholderia dolosa AUO158] gb|EAY72110.1| hypothetical protein BDAG_04969 [Burkholderia dolosa AUO158] Length = 302 Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 91/178 (51%), Positives = 112/178 (62%), Gaps = 4/178 (2%) Query: 8 QLTQSLRAVVTATLAATLLAVSLAVCASAIAAEPSGGAALQEKYQALQPQLTSNQFARPL 67 + T+S RA+ L +L V SA + G AAL E+Y++L QL N F RPL Sbjct: 2 ETTRSARAMRLVRRGCRALVAALCVACSAPSFGADGAAALLERYRSLGDQLKRNPFHRPL 61 Query: 68 YINSTESSSSIKGDIYAVVDYPFAQVRSSLT----MPAHWCDVLILHLNTKYCRPGPGQN 123 Y+ S+E+SS++KGDIYAVVDYPF+ V L PA+WC VLILHLNTKYC G N Sbjct: 62 YLESSEASSTLKGDIYAVVDYPFSVVNGKLNDPSQGPANWCAVLILHLNTKYCHASSGSN 121 Query: 124 PATLSMRVGKKHEQAIGDAYRIDFNYRVPANGDDYFDVRLAADKGPIDTRDYRIQLEA 181 A L + VG+K EQ + D YR+ F YRV A DYF V L AD GP+ T+DYRI LEA Sbjct: 122 GAVLDVNVGRKIEQKLSDTYRVQFRYRVAAATPDYFQVDLTADSGPMGTKDYRIALEA 179 >ref|ZP_03588699.1| conserved hypothetical protein [Burkholderia multivorans CGD1] gb|EED96925.1| conserved hypothetical protein [Burkholderia multivorans CGD1] Length = 303 Score = 174 bits (441), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 89/176 (50%), Positives = 113/176 (64%), Gaps = 4/176 (2%) Query: 10 TQSLRAVVTATLAATLLAVSLAVCASAIAAEPSGGAALQEKYQALQPQLTSNQFARPLYI 69 ++ LR V A +AA L + SA++ G AAL E+Y++L QL +N F RPLY+ Sbjct: 4 SERLRPVRFAGVAARALVALCCIAWSALSFGADGAAALLERYRSLGDQLKNNPFHRPLYL 63 Query: 70 NSTESSSSIKGDIYAVVDYPFAQVRSSLT----MPAHWCDVLILHLNTKYCRPGPGQNPA 125 S+E++S++KGDIYAVVDYPF V L PA+WC VLILHLNTKYC G N A Sbjct: 64 ESSEAASTLKGDIYAVVDYPFQVVNGKLNDPAQGPANWCAVLILHLNTKYCHASSGGNGA 123 Query: 126 TLSMRVGKKHEQAIGDAYRIDFNYRVPANGDDYFDVRLAADKGPIDTRDYRIQLEA 181 L + +G+K EQ + D YR+ F YRV A DYF V L AD GP+ T+DYRI LEA Sbjct: 124 VLDVNIGRKTEQKLSDTYRLQFRYRVAAATPDYFQVDLTADSGPMSTKDYRIALEA 179 >ref|YP_003774536.1| signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ62628.1| signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 311 Score = 171 bits (432), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 80/159 (50%), Positives = 110/159 (69%), Gaps = 4/159 (2%) Query: 27 AVSLAVCASAIAAEPS----GGAALQEKYQALQPQLTSNQFARPLYINSTESSSSIKGDI 82 A++L +C +A A + G AA++ +Y+ LQ +L++N + RPLY+NS E S++KGDI Sbjct: 24 ALALVLCGAAQAQAQNQTQAGMAAMKSRYEELQGELSNNAYQRPLYLNSREQDSTVKGDI 83 Query: 83 YAVVDYPFAQVRSSLTMPAHWCDVLILHLNTKYCRPGPGQNPATLSMRVGKKHEQAIGDA 142 YAV+ YPFAQVR +L P HWCD+LILHLNTKYCR TL M+VGKK EQ + D Sbjct: 84 YAVLAYPFAQVREALDGPEHWCDILILHLNTKYCRLLREGGKTTLRMQVGKKTEQDLNDT 143 Query: 143 YRIDFNYRVPANGDDYFDVRLAADKGPIDTRDYRIQLEA 181 YR+D Y ++ +YF + ADKGP+DT +YRI++EA Sbjct: 144 YRVDLRYHGGSSAAEYFSSSMLADKGPLDTSNYRIEIEA 182