BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0264.p         (143 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001355031.1| excinuclease ABC subunit A [Janthinobacteriu...   179   2e-43
ref|YP_001101328.1| DNA excision repair enzyme subunit, with Uvr...   177   4e-43
ref|YP_004751132.1| excinuclease ABC subunit A [Collimonas fungi...   176   8e-43
ref|YP_003777343.1| excinuclease ATPase subunit [Herbaspirillum ...   174   3e-42
ref|YP_001120710.1| excinuclease ABC subunit A [Burkholderia vie...   152   1e-35

>ref|YP_001355031.1| excinuclease ABC subunit A [Janthinobacterium sp. Marseille]
 gb|ABR89433.1| excinuclease ABC subunit A [Janthinobacterium sp. Marseille]
          Length = 954

 Score =  179 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 79/94 (84%), Positives = 88/94 (93%)

Query: 1   MLSNLAAFYEFDIDIPFEQLPEKSQQVILYGSGRQTIPFTYVNERGRTVIREHTFEGVVT 60
           MLSNLA +Y+FDID+PFE+LPE +QQ +L+GSG+Q IPFTYVNE+GRTVIREHTFEGVV 
Sbjct: 324 MLSNLAEYYDFDIDMPFEKLPEAAQQAVLFGSGKQNIPFTYVNEKGRTVIREHTFEGVVN 383

Query: 61  NLQRRYRETDSMAVKEELAKFINEKECPSCAGAR 94
           NLQRRYRETDSMAVKEELAKFINEKECPSC GAR
Sbjct: 384 NLQRRYRETDSMAVKEELAKFINEKECPSCQGAR 417


>ref|YP_001101328.1| DNA excision repair enzyme subunit, with UvrBC [Herminiimonas
           arsenicoxydans]
 emb|CAL63207.1| UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A)
           [Herminiimonas arsenicoxydans]
          Length = 954

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 79/94 (84%), Positives = 87/94 (92%)

Query: 1   MLSNLAAFYEFDIDIPFEQLPEKSQQVILYGSGRQTIPFTYVNERGRTVIREHTFEGVVT 60
           MLSNLA FY+FDID+PFE+LPE +QQ +L+GSG+Q IPFTYVNE+GRTVIREH FEGVV 
Sbjct: 324 MLSNLAEFYDFDIDVPFEKLPEVAQQAVLFGSGKQKIPFTYVNEKGRTVIREHEFEGVVN 383

Query: 61  NLQRRYRETDSMAVKEELAKFINEKECPSCAGAR 94
           NLQRRYRETDSMAVKEELAKFINEKECPSC GAR
Sbjct: 384 NLQRRYRETDSMAVKEELAKFINEKECPSCHGAR 417


>ref|YP_004751132.1| excinuclease ABC subunit A [Collimonas fungivorans Ter331]
 gb|AEK60309.1| Excinuclease ABC subunit A [Collimonas fungivorans Ter331]
          Length = 953

 Score =  176 bits (447), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 78/94 (82%), Positives = 89/94 (94%)

Query: 1   MLSNLAAFYEFDIDIPFEQLPEKSQQVILYGSGRQTIPFTYVNERGRTVIREHTFEGVVT 60
           ML+++AA Y FDID+PFE+LPEK+QQ +LYGSG++TIPF+YVNERGRTVI+EHTFEGVV 
Sbjct: 324 MLTSIAAHYAFDIDVPFEKLPEKAQQAVLYGSGKETIPFSYVNERGRTVIKEHTFEGVVN 383

Query: 61  NLQRRYRETDSMAVKEELAKFINEKECPSCAGAR 94
           NLQRRYRETDSMAVKEELAKFINEKECPSC GAR
Sbjct: 384 NLQRRYRETDSMAVKEELAKFINEKECPSCHGAR 417


>ref|YP_003777343.1| excinuclease ATPase subunit [Herbaspirillum seropedicae SmR1]
 gb|ADJ65435.1| excinuclease ATPase subunit protein [Herbaspirillum seropedicae
           SmR1]
          Length = 952

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 76/94 (80%), Positives = 88/94 (93%)

Query: 1   MLSNLAAFYEFDIDIPFEQLPEKSQQVILYGSGRQTIPFTYVNERGRTVIREHTFEGVVT 60
           ML+++AA+Y FD+D+PFEQL +K+QQ +LYGSGRQTIPF YVNERGRTV++EHTFEGVV 
Sbjct: 324 MLTSIAAYYGFDLDVPFEQLDDKAQQAVLYGSGRQTIPFAYVNERGRTVVKEHTFEGVVN 383

Query: 61  NLQRRYRETDSMAVKEELAKFINEKECPSCAGAR 94
           NLQRRYRETDSMAVKEELAKFINEK+CPSC GAR
Sbjct: 384 NLQRRYRETDSMAVKEELAKFINEKQCPSCHGAR 417


>ref|YP_001120710.1| excinuclease ABC subunit A [Burkholderia vietnamiensis G4]
 gb|ABO55875.1| Excinuclease ABC subunit A [Burkholderia vietnamiensis G4]
          Length = 961

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/98 (69%), Positives = 81/98 (82%)

Query: 1   MLSNLAAFYEFDIDIPFEQLPEKSQQVILYGSGRQTIPFTYVNERGRTVIREHTFEGVVT 60
           ML +LAAFYEFDID  FE LPEK ++V+LYGSG+QTIPF+Y+NERGRT IREH FEG++ 
Sbjct: 328 MLQSLAAFYEFDIDAAFEDLPEKIRKVLLYGSGKQTIPFSYINERGRTTIREHVFEGIIP 387

Query: 61  NLQRRYRETDSMAVKEELAKFINEKECPSCAGARXINE 98
           NL+RRYRETDS AV+EELAK+ N + CPSC G R   E
Sbjct: 388 NLERRYRETDSAAVREELAKYQNNQPCPSCDGTRLRRE 425